RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 NDUFA7O95182 113 aa12.74□□□□□ -0.37
CCDC28A-201ENST00000332797 DIRAS3O95661 229 aa12.74□□□□□ -0.37
CCDC28A-201ENST00000332797 FCER2P06734 321 aa12.74□□□□□ -0.37
CCDC28A-201ENST00000332797 HES1Q14469 280 aa12.74□□□□□ -0.37
CCDC28A-201ENST00000332797 Q6ZSV7 163 aa12.74□□□□□ -0.37
CCDC28A-201ENST00000332797 BEST4Q8NFU0 473 aa12.74□□□□□ -0.37
CCDC28A-201ENST00000332797 OR4F5Q8NH21 305 aa12.74□□□□□ -0.37
CCDC28A-201ENST00000332797 ABHD14BQ96IU4 210 aa12.74□□□□□ -0.37
CCDC28A-201ENST00000332797 RBM38Q9H0Z9 239 aaKnown RBP12.74□□□□□ -0.37
CCDC28A-201ENST00000332797 PIPOXQ9P0Z9 390 aa12.74□□□□□ -0.37
CCDC28A-201ENST00000332797 RSL24D1Q9UHA3 163 aaKnown RBP12.74□□□□□ -0.37
CCDC28A-201ENST00000332797 ANXA10Q9UJ72 324 aa12.74□□□□□ -0.37
CCDC28A-201ENST00000332797 FAM106CPP0CH98 169 aa12.73□□□□□ -0.37
CCDC28A-201ENST00000332797 MDKP21741 143 aaPredicted RBP12.73□□□□□ -0.37
CCDC28A-201ENST00000332797 CBX5P45973 191 aa12.73□□□□□ -0.37
CCDC28A-201ENST00000332797 AWAT1Q58HT5 328 aa12.73□□□□□ -0.37
CCDC28A-201ENST00000332797 C12orf54Q6X4T0 127 aa12.73□□□□□ -0.37
CCDC28A-201ENST00000332797 ZNF833PQ6ZTB9 187 aa12.73□□□□□ -0.37
CCDC28A-201ENST00000332797 HOGA1Q86XE5 327 aa12.73□□□□□ -0.37
CCDC28A-201ENST00000332797 SNX29P2Q8IUI4 249 aa12.73□□□□□ -0.37
CCDC28A-201ENST00000332797 OR4C13Q8NGP0 309 aa12.73□□□□□ -0.37
CCDC28A-201ENST00000332797 AGMATQ9BSE5 352 aa12.73□□□□□ -0.37
CCDC28A-201ENST00000332797 SLC25A33Q9BSK2 321 aa12.73□□□□□ -0.37
CCDC28A-201ENST00000332797 MRPL20Q9BYC9 149 aaKnown RBP12.73□□□□□ -0.37
CCDC28A-201ENST00000332797 NPFFR1Q9GZQ6 430 aa12.73□□□□□ -0.37
CCDC28A-201ENST00000332797 IFT46Q9NQC8 304 aa12.73□□□□□ -0.37
CCDC28A-201ENST00000332797 RNF150Q9ULK6 438 aa12.73□□□□□ -0.37
CCDC28A-201ENST00000332797 DPPA5A6NC42 116 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 A6NHS1 94 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 FAM90A9PA6NNJ1 464 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 CTDSP2O14595 271 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 RAB29O14966 203 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 IGKV1D-33P01593 117 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 IGKV1-33P01594 117 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 HLA-DQB1P01920 261 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 CTXN2P0C2S0 81 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 TMEM11P17152 192 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 PRSS3P35030 304 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 COMPP49747 757 aaPredicted RBP12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 ARPC4P59998 168 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 HABP2Q14520 560 aaPredicted RBP12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 HNF4GQ14541 408 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 RPL39P5Q59GN2 51 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 CNIH2Q6PI25 160 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 THNSL2Q86YJ6 484 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 LAX1Q8IWV1 398 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 SPATA3Q8NHX4 192 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 S1PR3Q99500 378 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 C6orf62Q9GZU0 229 aaPredicted RBP12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 TOLLIPQ9H0E2 274 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 MIXL1Q9H2W2 232 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 BEX1Q9HBH7 125 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 EXTL2Q9UBQ6 330 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 TENM1Q9UKZ4 2725 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 OR2F2O95006 317 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 OR8U9P0C7N5 309 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 GPR12P47775 334 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 FAM71F2Q6NXP2 309 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 C16orf82Q7Z2V1 217 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 H1FOOQ8IZA3 346 aaPredicted RBP12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 OR8U1Q8NH10 309 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 AKR1E2Q96JD6 320 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 RBM14Q96PK6 669 aaKnown RBP12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 DCUN1D5Q9BTE7 237 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 SLIRPQ9GZT3 109 aaKnown RBP12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 ZNF221Q9UK13 617 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 ADAM30Q9UKF2 790 aa12.72□□□□□ -0.37
CCDC28A-201ENST00000332797 ZNF736B4DX44 427 aaPredicted RBP12.71□□□□□ -0.38
CCDC28A-201ENST00000332797 TSPAN9O75954 239 aa12.71□□□□□ -0.38
CCDC28A-201ENST00000332797 NFYAP23511 347 aaPredicted RBP12.71□□□□□ -0.38
CCDC28A-201ENST00000332797 CD1BP29016 333 aa12.71□□□□□ -0.38
CCDC28A-201ENST00000332797 LSAMPQ13449 338 aa12.71□□□□□ -0.38
CCDC28A-201ENST00000332797 SNAPC3Q92966 411 aa12.71□□□□□ -0.38
CCDC28A-201ENST00000332797 NABP2Q9BQ15 211 aa12.71□□□□□ -0.38
CCDC28A-201ENST00000332797 ZNF251Q9BRH9 671 aa12.71□□□□□ -0.38
CCDC28A-201ENST00000332797 OR2D2Q9H210 308 aa12.71□□□□□ -0.38
CCDC28A-201ENST00000332797 GHITMQ9H3K2 345 aa12.71□□□□□ -0.38
CCDC28A-201ENST00000332797 RANBP3Q9H6Z4 567 aaPredicted RBP12.71□□□□□ -0.38
CCDC28A-201ENST00000332797 RBM7Q9Y580 266 aaKnown RBP12.71□□□□□ -0.38
CCDC28A-201ENST00000332797 CLPSL1A2RUU4 121 aa12.7□□□□□ -0.38
CCDC28A-201ENST00000332797 ZNF701M0R085 212 aaPredicted RBP12.7□□□□□ -0.38
CCDC28A-201ENST00000332797 OR2T10Q8NGZ9 312 aa12.7□□□□□ -0.38
CCDC28A-201ENST00000332797 MCFD2Q8NI22 146 aa12.7□□□□□ -0.38
CCDC28A-201ENST00000332797 LINC01006Q8NI28 216 aa12.7□□□□□ -0.38
CCDC28A-201ENST00000332797 RBMXL1Q96E39 390 aaKnown RBP12.7□□□□□ -0.38
CCDC28A-201ENST00000332797 EAF1Q96JC9 268 aaPredicted RBP12.7□□□□□ -0.38
CCDC28A-201ENST00000332797 C16orf95Q9H693 158 aa12.7□□□□□ -0.38
CCDC28A-201ENST00000332797 MOB4Q9Y3A3 225 aa12.7□□□□□ -0.38
CCDC28A-201ENST00000332797 STAB1Q9NY15 2570 aa12.69□□□□□ -0.38
CCDC28A-201ENST00000332797 ANK2Q01484 3957 aa12.69□□□□□ -0.38
CCDC28A-201ENST00000332797 A0A1B0GUS0 222 aa12.69□□□□□ -0.38
CCDC28A-201ENST00000332797 J3QRK9 145 aa12.69□□□□□ -0.38
CCDC28A-201ENST00000332797 MOSP00540 346 aa12.69□□□□□ -0.38
CCDC28A-201ENST00000332797 RNASE12Q5GAN4 147 aaKnown RBP12.69□□□□□ -0.38
CCDC28A-201ENST00000332797 GPX8Q8TED1 209 aa12.69□□□□□ -0.38
CCDC28A-201ENST00000332797 DGCR14Q96DF8 476 aaKnown RBP12.69□□□□□ -0.38
CCDC28A-201ENST00000332797 ZNF702PQ9H963 129 aa12.69□□□□□ -0.38
CCDC28A-201ENST00000332797 SCPEP1Q9HB40 452 aa12.69□□□□□ -0.38
CCDC28A-201ENST00000332797 NECAP2Q9NVZ3 263 aa12.69□□□□□ -0.38
CCDC28A-201ENST00000332797 ANAPC10Q9UM13 185 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms