RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 HSF4Q9ULV5 492 aa12.52□□□□□ -0.4
COL7A1-201ENST00000328333 OR11H12B2RN74 326 aa12.52□□□□□ -0.41
COL7A1-201ENST00000328333 LINC01559Q495D7 138 aa12.52□□□□□ -0.41
COL7A1-201ENST00000328333 MSRB3Q8IXL7 192 aa12.52□□□□□ -0.41
COL7A1-201ENST00000328333 FADS6Q8N9I5 356 aa12.52□□□□□ -0.41
COL7A1-201ENST00000328333 OR11H1Q8NG94 326 aa12.52□□□□□ -0.41
COL7A1-201ENST00000328333 OR11H2Q8NH07 326 aa12.52□□□□□ -0.41
COL7A1-201ENST00000328333 ANAPC1Q9H1A4 1944 aa12.52□□□□□ -0.41
COL7A1-201ENST00000328333 OR4C45A6NMZ5 311 aa12.52□□□□□ -0.41
COL7A1-201ENST00000328333 UBE2L6O14933 153 aa12.52□□□□□ -0.41
COL7A1-201ENST00000328333 PTP4A3O75365 173 aa12.52□□□□□ -0.41
COL7A1-201ENST00000328333 MRPL52Q86TS9 123 aaKnown RBP12.52□□□□□ -0.41
COL7A1-201ENST00000328333 PUSL1Q8N0Z8 303 aaKnown RBP12.52□□□□□ -0.41
COL7A1-201ENST00000328333 ASB5Q8WWX0 329 aa12.52□□□□□ -0.41
COL7A1-201ENST00000328333 TNFRSF12AQ9NP84 129 aa12.52□□□□□ -0.41
COL7A1-201ENST00000328333 PHLDA3Q9Y5J5 127 aa12.52□□□□□ -0.41
COL7A1-201ENST00000328333 CUL9Q8IWT3 2517 aa12.52□□□□□ -0.41
COL7A1-201ENST00000328333 TRAV17A0A0B4J275 112 aa12.52□□□□□ -0.41
COL7A1-201ENST00000328333 DPRXA6NFQ7 191 aa12.52□□□□□ -0.41
COL7A1-201ENST00000328333 CXCL13O43927 109 aa12.52□□□□□ -0.41
COL7A1-201ENST00000328333 SBK3P0C264 359 aa12.52□□□□□ -0.41
COL7A1-201ENST00000328333 TRGC1P0CF51 173 aa12.52□□□□□ -0.41
COL7A1-201ENST00000328333 ZNF506Q5JVG8 444 aa12.52□□□□□ -0.41
COL7A1-201ENST00000328333 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.52□□□□□ -0.41
COL7A1-201ENST00000328333 DEFB108BQ8NET1 73 aa12.52□□□□□ -0.41
COL7A1-201ENST00000328333 HARBI1Q96MB7 349 aa12.52□□□□□ -0.41
COL7A1-201ENST00000328333 MKRN2OSH3BPM6 223 aa12.52□□□□□ -0.41
COL7A1-201ENST00000328333 HMGCLL1Q8TB92 370 aa12.52□□□□□ -0.41
COL7A1-201ENST00000328333 MRPS18AQ9NVS2 196 aaKnown RBP12.52□□□□□ -0.41
COL7A1-201ENST00000328333 HBBP68871 147 aa12.51□□□□□ -0.41
COL7A1-201ENST00000328333 ZNF79Q15937 498 aa12.51□□□□□ -0.41
COL7A1-201ENST00000328333 Q6ZNB5 142 aa12.51□□□□□ -0.41
COL7A1-201ENST00000328333 SFXN3Q9BWM7 321 aa12.51□□□□□ -0.41
COL7A1-201ENST00000328333 NKX2-6A6NCS4 301 aa12.51□□□□□ -0.41
COL7A1-201ENST00000328333 ZNF296Q8WUU4 475 aaPredicted RBP12.51□□□□□ -0.41
COL7A1-201ENST00000328333 SLC26A1Q9H2B4 701 aa12.51□□□□□ -0.41
COL7A1-201ENST00000328333 MPLP40238 635 aa12.51□□□□□ -0.41
COL7A1-201ENST00000328333 RPS27P42677 84 aaKnown RBP12.51□□□□□ -0.41
COL7A1-201ENST00000328333 MOGAT3Q86VF5 341 aa12.51□□□□□ -0.41
COL7A1-201ENST00000328333 METTL26Q96S19 204 aa12.51□□□□□ -0.41
COL7A1-201ENST00000328333 MRPL32Q9BYC8 188 aaKnown RBP12.51□□□□□ -0.41
COL7A1-201ENST00000328333 RBKSQ9H477 322 aa12.51□□□□□ -0.41
COL7A1-201ENST00000328333 A0A1W2PQM1 296 aa12.51□□□□□ -0.41
COL7A1-201ENST00000328333 A0A1W2PS18 150 aa12.51□□□□□ -0.41
COL7A1-201ENST00000328333 PLA2G10O15496 165 aa12.51□□□□□ -0.41
COL7A1-201ENST00000328333 OR51B2Q9Y5P1 312 aa12.51□□□□□ -0.41
COL7A1-201ENST00000328333 COL9A2Q14055 689 aaPredicted RBP12.51□□□□□ -0.41
COL7A1-201ENST00000328333 ANKRD34AQ69YU3 496 aa12.51□□□□□ -0.41
COL7A1-201ENST00000328333 GVQW1Q8N7I0 195 aa12.51□□□□□ -0.41
COL7A1-201ENST00000328333 OR10AC1Q8NH08 325 aa12.51□□□□□ -0.41
COL7A1-201ENST00000328333 TNFAIP6P98066 277 aaPredicted RBP12.51□□□□□ -0.41
COL7A1-201ENST00000328333 GUCA2BQ16661 112 aa12.51□□□□□ -0.41
COL7A1-201ENST00000328333 RFLNAQ6ZTI6 216 aa12.51□□□□□ -0.41
COL7A1-201ENST00000328333 TCFL5Q9UL49 500 aa12.51□□□□□ -0.41
COL7A1-201ENST00000328333 MMP17Q9ULZ9 603 aa12.51□□□□□ -0.41
COL7A1-201ENST00000328333 MGPP08493 103 aa12.51□□□□□ -0.41
COL7A1-201ENST00000328333 K7N7A8 449 aa12.5□□□□□ -0.41
COL7A1-201ENST00000328333 TNXAQ16473 311 aa12.5□□□□□ -0.41
COL7A1-201ENST00000328333 MRGPRDQ8TDS7 321 aa12.5□□□□□ -0.41
COL7A1-201ENST00000328333 PRICKLE4Q2TBC4 344 aa12.5□□□□□ -0.41
COL7A1-201ENST00000328333 ZNF729A6NN14 1252 aaPredicted RBP12.5□□□□□ -0.41
COL7A1-201ENST00000328333 B4E171 279 aa12.5□□□□□ -0.41
COL7A1-201ENST00000328333 RAE1P78406 368 aaKnown RBP12.5□□□□□ -0.41
COL7A1-201ENST00000328333 SAPCD1Q5SSQ6 148 aa12.5□□□□□ -0.41
COL7A1-201ENST00000328333 ZNF660Q6AZW8 331 aaPredicted RBP12.5□□□□□ -0.41
COL7A1-201ENST00000328333 PGLYRP3Q96LB9 341 aa12.5□□□□□ -0.41
COL7A1-201ENST00000328333 SLC6A13Q9NSD5 602 aa12.5□□□□□ -0.41
COL7A1-201ENST00000328333 SRD5A2P31213 254 aa12.5□□□□□ -0.41
COL7A1-201ENST00000328333 TEX29Q8N6K0 151 aa12.5□□□□□ -0.41
COL7A1-201ENST00000328333 PCGF1Q9BSM1 259 aa12.5□□□□□ -0.41
COL7A1-201ENST00000328333 CBLN4Q9NTU7 201 aa12.5□□□□□ -0.41
COL7A1-201ENST00000328333 WNT9BO14905 357 aa12.5□□□□□ -0.41
COL7A1-201ENST00000328333 HERPUD1Q15011 391 aa12.5□□□□□ -0.41
COL7A1-201ENST00000328333 KCNS1Q96KK3 526 aa12.5□□□□□ -0.41
COL7A1-201ENST00000328333 FFAR1O14842 300 aa12.5□□□□□ -0.41
COL7A1-201ENST00000328333 ZNF32P17041 273 aa12.5□□□□□ -0.41
COL7A1-201ENST00000328333 LRRC29Q8WV35 223 aa12.5□□□□□ -0.41
COL7A1-201ENST00000328333 RAB1CQ92928 201 aa12.5□□□□□ -0.41
COL7A1-201ENST00000328333 ATP5LO75964 103 aa12.5□□□□□ -0.41
COL7A1-201ENST00000328333 OR4D9Q8NGE8 314 aa12.5□□□□□ -0.41
COL7A1-201ENST00000328333 OR4A5Q8NH83 315 aa12.5□□□□□ -0.41
COL7A1-201ENST00000328333 RNF186Q9NXI6 227 aa12.5□□□□□ -0.41
COL7A1-201ENST00000328333 PLXNA3P51805 1871 aa12.5□□□□□ -0.41
COL7A1-201ENST00000328333 DEFB108AA8MXU0 73 aa12.49□□□□□ -0.41
COL7A1-201ENST00000328333 F2RL2O00254 374 aa12.49□□□□□ -0.41
COL7A1-201ENST00000328333 H7C2G1 150 aa12.49□□□□□ -0.41
COL7A1-201ENST00000328333 CDK2AP1O14519 115 aa12.49□□□□□ -0.41
COL7A1-201ENST00000328333 OR2A4O95047 310 aa12.49□□□□□ -0.41
COL7A1-201ENST00000328333 TMEM177Q53S58 311 aa12.49□□□□□ -0.41
COL7A1-201ENST00000328333 ZNF683Q8IZ20 524 aa12.49□□□□□ -0.41
COL7A1-201ENST00000328333 OR2A7Q96R45 310 aa12.49□□□□□ -0.41
COL7A1-201ENST00000328333 CARHSP1Q9Y2V2 147 aaKnown RBP12.49□□□□□ -0.41
COL7A1-201ENST00000328333 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.49□□□□□ -0.41
COL7A1-201ENST00000328333 EML2O95834 649 aa12.49□□□□□ -0.41
COL7A1-201ENST00000328333 ZNF841Q6ZN19 808 aa12.49□□□□□ -0.41
COL7A1-201ENST00000328333 OR10J6PQ8NGY7 276 aa12.49□□□□□ -0.41
COL7A1-201ENST00000328333 FAM222BQ8WU58 562 aa12.49□□□□□ -0.41
COL7A1-201ENST00000328333 C2orf88Q9BSF0 95 aa12.49□□□□□ -0.41
COL7A1-201ENST00000328333 PAPPAQ13219 1627 aa12.49□□□□□ -0.41
COL7A1-201ENST00000328333 PRF1P14222 555 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms