RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 FBLP22087 321 aaKnown RBP11.46□□□□□ -0.58
SKA3-201ENST00000298260 F2RP25116 425 aa11.46□□□□□ -0.58
SKA3-201ENST00000298260 TFF3Q07654 80 aa11.46□□□□□ -0.58
SKA3-201ENST00000298260 SHBQ15464 509 aa11.46□□□□□ -0.58
SKA3-201ENST00000298260 HIST3H3Q16695 136 aa11.46□□□□□ -0.58
SKA3-201ENST00000298260 KMT5CQ86Y97 462 aa11.46□□□□□ -0.58
SKA3-201ENST00000298260 CLEC18CQ8NCF0 446 aa11.46□□□□□ -0.58
SKA3-201ENST00000298260 ANAPC16Q96DE5 110 aa11.46□□□□□ -0.58
SKA3-201ENST00000298260 OR6C1Q96RD1 312 aa11.46□□□□□ -0.58
SKA3-201ENST00000298260 REPIN1Q9BWE0 567 aaKnown RBP11.46□□□□□ -0.58
SKA3-201ENST00000298260 CRIM1Q9NZV1 1036 aa11.46□□□□□ -0.58
SKA3-201ENST00000298260 DOCK7Q96N67 2140 aa11.46□□□□□ -0.58
SKA3-201ENST00000298260 C11orf94C9JXX5 98 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 TDGF1P13385 188 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 BCL3P20749 454 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 SOX8P57073 446 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 ZXDAP98168 799 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 SSPNQ14714 243 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 KIAA1644Q3SXP7 199 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 SAPCD1Q5SSQ6 148 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 BAGE3Q86Y29 109 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 BAGE2Q86Y30 109 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 OR10G9Q8NGN4 311 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 OR10G7Q8NGN6 311 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 OXGR1Q96P68 337 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 TRBV20OR9-2A0A075B6H5 130 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 SPTY2D1-AS1A0A0U1RR47 76 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 SIRPB1O00241 398 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 IGKV1-5P01602 117 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 GNB1P62873 340 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 PSG4Q00888 419 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 SLC38A11Q08AI6 406 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 DEFB133Q30KQ1 61 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 LEMD1Q68G75 181 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 Q6ZS52 159 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 METTL7AQ9H8H3 244 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 ELOVL5Q9NYP7 299 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 CD300LBA8K4G0 201 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 IGHV4-34P06331 123 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 SRP14P37108 136 aaKnown RBP11.45□□□□□ -0.58
SKA3-201ENST00000298260 TPPP2P59282 170 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 SPATA45Q537H7 98 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 Q6ZN92 141 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 OR5D13Q8NGL4 314 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 PSMF1Q92530 271 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 SPSB1Q96BD6 273 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 TXN2Q99757 166 aa11.45□□□□□ -0.58
SKA3-201ENST00000298260 UBE2ZQ9H832 354 aaPredicted RBP11.45□□□□□ -0.58
SKA3-201ENST00000298260 LOC105371242A0A075B767 164 aa11.44□□□□□ -0.58
SKA3-201ENST00000298260 TRBV11-1A0A0K0K1C0 115 aa11.44□□□□□ -0.58
SKA3-201ENST00000298260 CBY3A6NI87 242 aa11.44□□□□□ -0.58
SKA3-201ENST00000298260 CLDN1O95832 211 aa11.44□□□□□ -0.58
SKA3-201ENST00000298260 IGHEP01854 428 aa11.44□□□□□ -0.58
SKA3-201ENST00000298260 CTSSP25774 331 aa11.44□□□□□ -0.58
SKA3-201ENST00000298260 LHX2P50458 406 aa11.44□□□□□ -0.58
SKA3-201ENST00000298260 MSMO1Q15800 293 aa11.44□□□□□ -0.58
SKA3-201ENST00000298260 TMEM211Q6ICI0 200 aa11.44□□□□□ -0.58
SKA3-201ENST00000298260 VHLLQ6RSH7 139 aa11.44□□□□□ -0.58
SKA3-201ENST00000298260 TMEM144Q7Z5S9 345 aa11.44□□□□□ -0.58
SKA3-201ENST00000298260 ST6GALNAC3Q8NDV1 305 aa11.44□□□□□ -0.58
SKA3-201ENST00000298260 OR5AU1Q8NGC0 362 aa11.44□□□□□ -0.58
SKA3-201ENST00000298260 ZNF488Q96MN9 340 aa11.44□□□□□ -0.58
SKA3-201ENST00000298260 RAB40CQ96S21 281 aa11.44□□□□□ -0.58
SKA3-201ENST00000298260 PSMG3Q9BT73 122 aaPredicted RBP11.44□□□□□ -0.58
SKA3-201ENST00000298260 GPR27Q9NS67 375 aa11.44□□□□□ -0.58
SKA3-201ENST00000298260 TMEM250H0YL14 139 aa11.44□□□□□ -0.58
SKA3-201ENST00000298260 HS3ST1O14792 307 aa11.44□□□□□ -0.58
SKA3-201ENST00000298260 SERF2P84101 59 aa11.44□□□□□ -0.58
SKA3-201ENST00000298260 KCNMB1Q16558 191 aa11.44□□□□□ -0.58
SKA3-201ENST00000298260 OR1L1Q8NH94 360 aa11.44□□□□□ -0.58
SKA3-201ENST00000298260 FGFBP3Q8TAT2 258 aa11.44□□□□□ -0.58
SKA3-201ENST00000298260 NEIL1Q96FI4 390 aaPredicted RBP11.44□□□□□ -0.58
SKA3-201ENST00000298260 OR1A1Q9P1Q5 309 aa11.44□□□□□ -0.58
SKA3-201ENST00000298260 TRAV38-1A0A0B4J264 116 aa11.43□□□□□ -0.58
SKA3-201ENST00000298260 B4GALT1P15291 398 aa11.43□□□□□ -0.58
SKA3-201ENST00000298260 CRISP2P16562 243 aa11.43□□□□□ -0.58
SKA3-201ENST00000298260 OTX1P32242 354 aaPredicted RBP11.43□□□□□ -0.58
SKA3-201ENST00000298260 BPIFB3P59826 476 aa11.43□□□□□ -0.58
SKA3-201ENST00000298260 YPEL5P62699 121 aa11.43□□□□□ -0.58
SKA3-201ENST00000298260 SLC35B1P78383 322 aa11.43□□□□□ -0.58
SKA3-201ENST00000298260 CNN3Q15417 329 aaKnown RBP11.43□□□□□ -0.58
SKA3-201ENST00000298260 HLA-DRB5Q30154 266 aa11.43□□□□□ -0.58
SKA3-201ENST00000298260 AARDQ4LEZ3 155 aa11.43□□□□□ -0.58
SKA3-201ENST00000298260 RDH5Q92781 318 aa11.43□□□□□ -0.58
SKA3-201ENST00000298260 PTRH2Q9Y3E5 179 aaKnown RBP11.43□□□□□ -0.58
SKA3-201ENST00000298260 ATP23Q9Y6H3 246 aa11.43□□□□□ -0.58
SKA3-201ENST00000298260 R4GN57 208 aa11.43□□□□□ -0.58
SKA3-201ENST00000298260 DIRC3C9JPN6 131 aa11.43□□□□□ -0.58
SKA3-201ENST00000298260 H0Y980 276 aa11.43□□□□□ -0.58
SKA3-201ENST00000298260 SELENOTP62341 195 aa11.43□□□□□ -0.58
SKA3-201ENST00000298260 LMX1AQ8TE12 382 aa11.43□□□□□ -0.58
SKA3-201ENST00000298260 SPTSSAQ969W0 71 aa11.43□□□□□ -0.58
SKA3-201ENST00000298260 CLN8Q9UBY8 286 aa11.43□□□□□ -0.58
SKA3-201ENST00000298260 CD207Q9UJ71 328 aa11.43□□□□□ -0.58
SKA3-201ENST00000298260 NKX6-3A6NJ46 265 aa11.42□□□□□ -0.58
SKA3-201ENST00000298260 DHHO43323 396 aa11.42□□□□□ -0.58
SKA3-201ENST00000298260 PMCHP20382 165 aa11.42□□□□□ -0.58
SKA3-201ENST00000298260 ARL4DP49703 201 aa11.42□□□□□ -0.58
SKA3-201ENST00000298260 KRTCAP3Q53RY4 240 aa11.42□□□□□ -0.58
SKA3-201ENST00000298260 PRR31Q5SQ13 230 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms