RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 PTCRAQ6ISU1 281 aaPredicted RBP8.63□□□□□ -1.03
COL6A3-201ENST00000295550 H1FOOQ8IZA3 346 aaPredicted RBP8.63□□□□□ -1.03
COL6A3-201ENST00000295550 LSM10Q969L4 123 aaKnown RBP8.63□□□□□ -1.03
COL6A3-201ENST00000295550 K7EQS6 105 aa8.63□□□□□ -1.03
COL6A3-201ENST00000295550 GNG7O60262 68 aa8.63□□□□□ -1.03
COL6A3-201ENST00000295550 MT-ND6P03923 174 aa8.63□□□□□ -1.03
COL6A3-201ENST00000295550 TRGC2P03986 189 aa8.63□□□□□ -1.03
COL6A3-201ENST00000295550 SMIM13P0DJ93 91 aa8.63□□□□□ -1.03
COL6A3-201ENST00000295550 APELAP0DMC3 54 aa8.63□□□□□ -1.03
COL6A3-201ENST00000295550 PRSS53Q2L4Q9 553 aa8.63□□□□□ -1.03
COL6A3-201ENST00000295550 PCGF1Q9BSM1 259 aa8.63□□□□□ -1.03
COL6A3-201ENST00000295550 FAM222BQ8WU58 562 aa8.63□□□□□ -1.03
COL6A3-201ENST00000295550 RNF133Q8WVZ7 376 aa8.63□□□□□ -1.03
COL6A3-201ENST00000295550 PRNDQ9UKY0 176 aa8.63□□□□□ -1.03
COL6A3-201ENST00000295550 LINC01387J3KSC0 135 aa8.63□□□□□ -1.03
COL6A3-201ENST00000295550 UBE2L6O14933 153 aa8.63□□□□□ -1.03
COL6A3-201ENST00000295550 LGALS3P17931 250 aaKnown RBP8.63□□□□□ -1.03
COL6A3-201ENST00000295550 LHX9Q9NQ69 397 aa8.63□□□□□ -1.03
COL6A3-201ENST00000295550 RCC2Q9P258 522 aaKnown RBP8.63□□□□□ -1.03
COL6A3-201ENST00000295550 METTL12A8MUP2 240 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 SLC25A17O43808 307 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 FOLR2P14207 255 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 DMRT1Q9Y5R6 373 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 C5orf67F2Z3F1 127 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 CYB5R3P00387 301 aaPredicted RBP8.62□□□□□ -1.03
COL6A3-201ENST00000295550 MEF2BQ02080 365 aaPredicted RBP8.62□□□□□ -1.03
COL6A3-201ENST00000295550 ZNF506Q5JVG8 444 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 MRAP2Q96G30 205 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 IGHV5-51A0A0C4DH38 117 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 MDKP21741 143 aaPredicted RBP8.62□□□□□ -1.03
COL6A3-201ENST00000295550 GUCA2BQ16661 112 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 PABPC1L2AQ5JQF8 200 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 GHITMQ9H3K2 345 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 TMEM131Q92545 1883 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 HIGD1AQ9Y241 93 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 MOB4Q9Y3A3 225 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 PCDH15Q96QU1 1955 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 A0A1B0GTH9 108 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 HYAL3O43820 417 aaPredicted RBP8.62□□□□□ -1.03
COL6A3-201ENST00000295550 GCSAMLQ5JQS6 135 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 ZNF600Q6ZNG1 722 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 ANKRD37Q7Z713 158 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 IL4P05112 153 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 VDAC1P21796 283 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 C10orf35Q96D05 121 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 EWSR1Q01844 656 aaKnown RBP eCLIP8.62□□□□□ -1.03
COL6A3-201ENST00000295550 IZUMO4Q1ZYL8 232 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 CYB5R2Q6BCY4 276 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 BGLAPP02818 100 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 TM4SF19Q96DZ7 209 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 PGLYRP3Q96LB9 341 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 SOSTQ9BQB4 213 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 PRSS27Q9BQR3 290 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 PAXXQ9BUH6 204 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 PEF1Q9UBV8 284 aaKnown RBP8.62□□□□□ -1.03
COL6A3-201ENST00000295550 C2CD4DB7Z1M9 353 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 CIRBPQ14011 172 aaKnown RBP8.62□□□□□ -1.03
COL6A3-201ENST00000295550 CBLN3Q6UW01 205 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 P2RX4Q99571 388 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 FOXB1Q99853 325 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 CHRNA10Q9GZZ6 450 aa8.62□□□□□ -1.03
COL6A3-201ENST00000295550 A8MWL6 223 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 COL19A1Q14993 1142 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 HERPUD1Q15011 391 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 SLC23A3Q6PIS1 610 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 ANAPC1Q9H1A4 1944 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 F2RL2O00254 374 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 RBFOX2O43251 390 aaKnown RBP eCLIP8.61□□□□□ -1.03
COL6A3-201ENST00000295550 FSTP19883 344 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 DMRTA1Q5VZB9 504 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 SPEM1Q8N4L4 309 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 CRISPLD2Q9H0B8 497 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 LOXL2Q9Y4K0 774 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 AUP1Q9Y679 476 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 OR6X1Q8NH79 312 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 COL9A1P20849 921 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 OR8B12Q8NGG6 310 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 CCL17Q92583 94 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 TMUB1Q9BVT8 246 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 CKS2P33552 79 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 EML5Q05BV3 1969 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 EIF3IQ13347 325 aaKnown RBP8.61□□□□□ -1.03
COL6A3-201ENST00000295550 OR2V2Q96R30 315 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 MMP16P51512 607 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 TRAV8-7A0A075B6U6 113 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 C19orf48Q6RUI8 117 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 WFIKKN1Q96NZ8 548 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 SLC26A1Q9H2B4 701 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 IL19Q9UHD0 177 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 OTOGLQ3ZCN5 2332 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 CEACAM3P40198 252 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 ID1P41134 155 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 WNT5AP41221 380 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 ATOH7Q8N100 152 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 RFLNBQ8N5W9 214 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 BEND2Q8NDZ0 799 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 OR10D3Q8NH80 312 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 CA10Q9NS85 328 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 OR51B2Q9Y5P1 312 aa8.61□□□□□ -1.03
COL6A3-201ENST00000295550 SIRT4Q9Y6E7 314 aaPredicted RBP8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms