RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 HIST1H1BP16401 226 aaKnown RBP13.94□□□□□ -0.18
CTCF-201ENST00000264010 TNFRSF9Q07011 255 aa13.94□□□□□ -0.18
CTCF-201ENST00000264010 OR2C3Q8N628 320 aa13.94□□□□□ -0.18
CTCF-201ENST00000264010 WDR1O75083 606 aa13.94□□□□□ -0.18
CTCF-201ENST00000264010 OR4A4PQ8NGN8 299 aa13.94□□□□□ -0.18
CTCF-201ENST00000264010 OR5P3Q8WZ94 311 aa13.94□□□□□ -0.18
CTCF-201ENST00000264010 MUCL1Q96DR8 90 aa13.94□□□□□ -0.18
CTCF-201ENST00000264010 WDYHV1Q96HA8 205 aa13.94□□□□□ -0.18
CTCF-201ENST00000264010 OR2J1Q9GZK6 312 aa13.94□□□□□ -0.18
CTCF-201ENST00000264010 ATP23Q9Y6H3 246 aa13.94□□□□□ -0.18
CTCF-201ENST00000264010 ZNF891A8MT65 544 aaPredicted RBP13.93□□□□□ -0.18
CTCF-201ENST00000264010 CATR1Q13166 79 aa13.93□□□□□ -0.18
CTCF-201ENST00000264010 FAM214BQ7L5A3 538 aa13.93□□□□□ -0.18
CTCF-201ENST00000264010 BCL2L2Q92843 193 aaPredicted RBP13.93□□□□□ -0.18
CTCF-201ENST00000264010 NKX2-6A6NCS4 301 aa13.93□□□□□ -0.18
CTCF-201ENST00000264010 C5orf52A6NGY3 159 aa13.93□□□□□ -0.18
CTCF-201ENST00000264010 HLA-DRB3P79483 266 aa13.93□□□□□ -0.18
CTCF-201ENST00000264010 MSMO1Q15800 293 aa13.93□□□□□ -0.18
CTCF-201ENST00000264010 OR10V1Q8NGI7 309 aa13.93□□□□□ -0.18
CTCF-201ENST00000264010 SLC25A40Q8TBP6 338 aa13.93□□□□□ -0.18
CTCF-201ENST00000264010 TAAR3PQ9P1P4 343 aa13.93□□□□□ -0.18
CTCF-201ENST00000264010 POMT1Q9Y6A1 747 aa13.93□□□□□ -0.18
CTCF-201ENST00000264010 ARL2-SNX15V9GYD0 113 aa13.93□□□□□ -0.18
CTCF-201ENST00000264010 CEP250Q9BV73 2442 aa13.93□□□□□ -0.18
CTCF-201ENST00000264010 VDAC1P21796 283 aa13.93□□□□□ -0.18
CTCF-201ENST00000264010 GABRA2P47869 451 aa13.93□□□□□ -0.18
CTCF-201ENST00000264010 FGF8P55075 233 aaPredicted RBP13.93□□□□□ -0.18
CTCF-201ENST00000264010 PLA2G2CQ5R387 149 aa13.93□□□□□ -0.18
CTCF-201ENST00000264010 DUSP13Q9UII6 198 aa13.93□□□□□ -0.18
CTCF-201ENST00000264010 CNOT1A5YKK6 2376 aaKnown RBP13.92□□□□□ -0.18
CTCF-201ENST00000264010 ZNF407Q9C0G0 2248 aa13.92□□□□□ -0.18
CTCF-201ENST00000264010 ABCA1O95477 2261 aa13.92□□□□□ -0.18
CTCF-201ENST00000264010 F8VVB4 439 aa13.92□□□□□ -0.18
CTCF-201ENST00000264010 F8VWA3 439 aa13.92□□□□□ -0.18
CTCF-201ENST00000264010 HBE1P02100 147 aa13.92□□□□□ -0.18
CTCF-201ENST00000264010 MDS2Q8NDY4 140 aa13.92□□□□□ -0.18
CTCF-201ENST00000264010 PLSCR2Q9NRY7 297 aa13.92□□□□□ -0.18
CTCF-201ENST00000264010 LIN7CQ9NUP9 197 aaKnown RBP13.92□□□□□ -0.18
CTCF-201ENST00000264010 ZNF586Q9NXT0 402 aa13.92□□□□□ -0.18
CTCF-201ENST00000264010 VPS13AQ96RL7 3174 aa13.92□□□□□ -0.18
CTCF-201ENST00000264010 CDIPTO14735 213 aa13.92□□□□□ -0.18
CTCF-201ENST00000264010 COL5A1-AS1Q5SY13 56 aa13.92□□□□□ -0.18
CTCF-201ENST00000264010 LEMD1Q68G75 181 aa13.92□□□□□ -0.18
CTCF-201ENST00000264010 TMEM222Q9H0R3 208 aa13.92□□□□□ -0.18
CTCF-201ENST00000264010 MTCH1Q9NZJ7 389 aa13.92□□□□□ -0.18
CTCF-201ENST00000264010 ELOA3CA0A087WX78 387 aaPredicted RBP13.92□□□□□ -0.18
CTCF-201ENST00000264010 FAM24AA6NFZ4 105 aa13.92□□□□□ -0.18
CTCF-201ENST00000264010 OR8U8P0C7N1 319 aa13.92□□□□□ -0.18
CTCF-201ENST00000264010 HERPUD1Q15011 391 aa13.92□□□□□ -0.18
CTCF-201ENST00000264010 OR2W1Q9Y3N9 320 aa13.92□□□□□ -0.18
CTCF-201ENST00000264010 CACNA1HO95180 2353 aa13.91□□□□□ -0.18
CTCF-201ENST00000264010 FOXI3A8MTJ6 420 aaPredicted RBP13.91□□□□□ -0.18
CTCF-201ENST00000264010 CD200P41217 278 aa13.91□□□□□ -0.18
CTCF-201ENST00000264010 TNFSF10P50591 281 aa13.91□□□□□ -0.18
CTCF-201ENST00000264010 COLCA1Q6ZS62 124 aa13.91□□□□□ -0.18
CTCF-201ENST00000264010 OR4F5Q8NH21 305 aa13.91□□□□□ -0.18
CTCF-201ENST00000264010 GNPNAT1Q96EK6 184 aaPredicted RBP13.91□□□□□ -0.18
CTCF-201ENST00000264010 OR4F4Q96R69 305 aa13.91□□□□□ -0.18
CTCF-201ENST00000264010 TMEM30CPA0ZSE6 113 aa13.91□□□□□ -0.18
CTCF-201ENST00000264010 J3QW42 95 aa13.91□□□□□ -0.18
CTCF-201ENST00000264010 IL24Q13007 206 aa13.91□□□□□ -0.18
CTCF-201ENST00000264010 TMEM183BQ1AE95 376 aa13.91□□□□□ -0.18
CTCF-201ENST00000264010 LBHQ53QV2 105 aaPredicted RBP13.91□□□□□ -0.18
CTCF-201ENST00000264010 TUBD1Q9UJT1 453 aa13.91□□□□□ -0.18
CTCF-201ENST00000264010 DUXBA0A1W2PPF3 345 aa13.91□□□□□ -0.18
CTCF-201ENST00000264010 NOVA1P51513 510 aaKnown RBP13.91□□□□□ -0.18
CTCF-201ENST00000264010 PRR27Q6MZM9 219 aa13.91□□□□□ -0.18
CTCF-201ENST00000264010 UBALD1Q8TB05 177 aa13.91□□□□□ -0.18
CTCF-201ENST00000264010 MARS2Q96GW9 593 aaKnown RBP13.91□□□□□ -0.18
CTCF-201ENST00000264010 NOL4LQ96MY1 436 aaPredicted RBP13.91□□□□□ -0.18
CTCF-201ENST00000264010 ZNF581Q9P0T4 197 aa13.91□□□□□ -0.18
CTCF-201ENST00000264010 SULT1A2P50226 295 aa13.9□□□□□ -0.18
CTCF-201ENST00000264010 OR8G2PQ6IF36 304 aa13.9□□□□□ -0.18
CTCF-201ENST00000264010 LHX4Q969G2 390 aa13.9□□□□□ -0.18
CTCF-201ENST00000264010 SPRY4Q9C004 299 aa13.9□□□□□ -0.18
CTCF-201ENST00000264010 OR51I2Q9H344 312 aa13.9□□□□□ -0.18
CTCF-201ENST00000264010 DLL3Q9NYJ7 618 aa13.9□□□□□ -0.18
CTCF-201ENST00000264010 PITPNC1Q9UKF7 332 aa13.9□□□□□ -0.18
CTCF-201ENST00000264010 UBE2CO00762 179 aa13.9□□□□□ -0.18
CTCF-201ENST00000264010 MYO7BQ6PIF6 2116 aa13.9□□□□□ -0.18
CTCF-201ENST00000264010 PTPRZ1P23471 2315 aaPredicted RBP13.9□□□□□ -0.18
CTCF-201ENST00000264010 HBG1P69891 147 aa13.9□□□□□ -0.18
CTCF-201ENST00000264010 HBG2P69892 147 aa13.9□□□□□ -0.18
CTCF-201ENST00000264010 GABRA6Q16445 453 aa13.9□□□□□ -0.18
CTCF-201ENST00000264010 CXorf67Q86X51 503 aaPredicted RBP13.9□□□□□ -0.18
CTCF-201ENST00000264010 PARP11Q9NR21 331 aa13.9□□□□□ -0.18
CTCF-201ENST00000264010 EML6Q6ZMW3 1958 aa13.9□□□□□ -0.19
CTCF-201ENST00000264010 UCP2P55851 309 aa13.89□□□□□ -0.19
CTCF-201ENST00000264010 FDCSPQ8NFU4 85 aa13.89□□□□□ -0.19
CTCF-201ENST00000264010 HINT2Q9BX68 163 aa13.89□□□□□ -0.19
CTCF-201ENST00000264010 TRAPPC1Q9Y5R8 145 aa13.89□□□□□ -0.19
CTCF-201ENST00000264010 GVINP1Q7Z2Y8 2422 aa13.89□□□□□ -0.19
CTCF-201ENST00000264010 SEC11BP0C7V7 166 aa13.89□□□□□ -0.19
CTCF-201ENST00000264010 CEACAM6P40199 344 aa13.89□□□□□ -0.19
CTCF-201ENST00000264010 ZNF787Q6DD87 383 aa13.89□□□□□ -0.19
CTCF-201ENST00000264010 CYB561D1Q8N8Q1 229 aa13.89□□□□□ -0.19
CTCF-201ENST00000264010 RAB24Q969Q5 203 aa13.89□□□□□ -0.19
CTCF-201ENST00000264010 GALMQ96C23 342 aa13.89□□□□□ -0.19
CTCF-201ENST00000264010 CXXC4Q9H2H0 198 aa13.89□□□□□ -0.19
CTCF-201ENST00000264010 HIPK2Q9H2X6 1198 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms