RNA–Protein interactions for RNA: ENST00000258733.8

GPNMB-201, Transcript of glycoprotein nmb, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene GPNMB, Length 2,862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-201ENST00000258733 DERL3Q96Q80 235 aa6.6□□□□□ -1.35
GPNMB-201ENST00000258733 ADOQ96SZ5 270 aa6.6□□□□□ -1.35
GPNMB-201ENST00000258733 FAM103A1Q9BTL3 118 aaKnown RBP6.6□□□□□ -1.35
GPNMB-201ENST00000258733 LOXL2Q9Y4K0 774 aa6.6□□□□□ -1.35
GPNMB-201ENST00000258733 GRIFINA4D1Z8 144 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 RER1O15258 196 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 FAM106CPP0CH98 169 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 TUSC3Q13454 348 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 ZNF146Q15072 292 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 FAM106AQ4KMX7 169 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 C6orf226Q5I0X4 101 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 RASL11AQ6T310 242 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 OR4C3Q8NH37 302 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 ZNF563Q8TA94 476 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 FAM213BQ8TBF2 198 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 GATAD1Q8WUU5 269 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 TMEM54Q969K7 222 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 LINC00477Q96M19 166 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 OR4C12Q96R67 309 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 HSD17B10Q99714 261 aaKnown RBP6.59□□□□□ -1.35
GPNMB-201ENST00000258733 C20orf78Q9BR46 151 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 CXCL16Q9H2A7 254 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 DUSP13Q9UII6 198 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 PXMP4Q9Y6I8 212 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 TRAV1-2A0A0B4J238 106 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 CCL15-CCL14A0A0B4J2E2 113 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 CD300LBA8K4G0 201 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 C17orf112F2Z3M2 114 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 GPX1P07203 203 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 HTR1DP28221 377 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 APOBEC1P41238 236 aaKnown RBP6.59□□□□□ -1.35
GPNMB-201ENST00000258733 FUT6P51993 359 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 RPL15P61313 204 aaKnown RBP6.59□□□□□ -1.35
GPNMB-201ENST00000258733 CCL20P78556 96 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 MFAP5Q13361 173 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 CLEC12BQ2HXU8 276 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 ZNF322Q6U7Q0 402 aaPredicted RBP6.59□□□□□ -1.35
GPNMB-201ENST00000258733 CBLN3Q6UW01 205 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 HMGN2P46Q86SG4 172 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 SYT8Q8NBV8 401 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 DNAJA3Q96EY1 480 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 ACER3Q9NUN7 267 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 R4GN57 208 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 KIAA1549Q9HCM3 1950 aa6.59□□□□□ -1.35
GPNMB-201ENST00000258733 BORCS7-ASMTA0A0B4J1R7 106 aa6.59□□□□□ -1.36
GPNMB-201ENST00000258733 TRAV24A0A0B4J272 114 aa6.59□□□□□ -1.36
GPNMB-201ENST00000258733 A0A1W2PPM0 123 aa6.59□□□□□ -1.36
GPNMB-201ENST00000258733 A0A1W2PQF6 199 aa6.59□□□□□ -1.36
GPNMB-201ENST00000258733 H0YJW9 148 aa6.59□□□□□ -1.36
GPNMB-201ENST00000258733 CSN3P07498 182 aa6.59□□□□□ -1.36
GPNMB-201ENST00000258733 VDAC1P21796 283 aa6.59□□□□□ -1.36
GPNMB-201ENST00000258733 CDK2P24941 298 aa6.59□□□□□ -1.36
GPNMB-201ENST00000258733 COL8A1P27658 744 aa6.59□□□□□ -1.36
GPNMB-201ENST00000258733 NKX2-1P43699 371 aaPredicted RBP6.59□□□□□ -1.36
GPNMB-201ENST00000258733 HMGA2P52926 109 aa6.59□□□□□ -1.36
GPNMB-201ENST00000258733 FKBP1AP62942 108 aaKnown RBP6.59□□□□□ -1.36
GPNMB-201ENST00000258733 PPP1R1AQ13522 171 aa6.59□□□□□ -1.36
GPNMB-201ENST00000258733 NR0B2Q15466 257 aa6.59□□□□□ -1.36
GPNMB-201ENST00000258733 FAM159AQ6UWV7 190 aa6.59□□□□□ -1.36
GPNMB-201ENST00000258733 SLC38A5Q8WUX1 472 aa6.59□□□□□ -1.36
GPNMB-201ENST00000258733 DDIT4LQ96D03 193 aa6.59□□□□□ -1.36
GPNMB-201ENST00000258733 ATG10Q9H0Y0 220 aa6.59□□□□□ -1.36
GPNMB-201ENST00000258733 DEFB129Q9H1M3 183 aa6.59□□□□□ -1.36
GPNMB-201ENST00000258733 VSIG4Q9Y279 399 aa6.59□□□□□ -1.36
GPNMB-201ENST00000258733 ZNF835Q9Y2P0 537 aa6.59□□□□□ -1.36
GPNMB-201ENST00000258733 SIRT4Q9Y6E7 314 aaPredicted RBP6.59□□□□□ -1.36
GPNMB-201ENST00000258733 TRBV20-1A0A075B6N2 111 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 LOC102725191A0A1B0GVB3 256 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 MED19A0JLT2 244 aaPredicted RBP6.58□□□□□ -1.36
GPNMB-201ENST00000258733 TMEM8BA6NDV4 472 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 PRSS29PA6NIE9 313 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 GPR137BO60478 399 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 CELA2AP08217 269 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 C3orf79P0CE67 100 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 ADMP35318 185 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 TAF10Q12962 218 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 FNDC7Q5VTL7 733 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 FAM90A2PQ658T7 463 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 FAM110DQ8TAY7 271 aaPredicted RBP6.58□□□□□ -1.36
GPNMB-201ENST00000258733 SSC4DQ8WTU2 575 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 PELI1Q96FA3 418 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 NKX2-4Q9H2Z4 354 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 FAM206AQ9NX38 181 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 SH2B3Q9UQQ2 575 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 MED31Q9Y3C7 131 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 DOCK6Q96HP0 2047 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 PLXNA1Q9UIW2 1896 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 TMEM89A2RUT3 159 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 ZNF736B4DX44 427 aaPredicted RBP6.58□□□□□ -1.36
GPNMB-201ENST00000258733 SOCS1O15524 211 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 CD3DP04234 171 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 FABP2P12104 132 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 RPL35AP18077 110 aaKnown RBP6.58□□□□□ -1.36
GPNMB-201ENST00000258733 OR2L13Q8N349 312 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 SPEM1Q8N4L4 309 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 JOSD2Q8TAC2 188 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 SYNPRQ8TBG9 265 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 RPEQ96AT9 228 aa6.58□□□□□ -1.36
GPNMB-201ENST00000258733 GNPNAT1Q96EK6 184 aaPredicted RBP6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms