RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 TRIM64CA6NLI5 447 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 RFPL4AA6NLU0 287 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 NCF1CA8MVU1 366 aaPredicted RBP-0.07□□□□□ -2.42
VPS35-212ENST00000640313 C9J4A7 227 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 RFPL4AL1F8VTS6 287 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 RNASEK-C17orf49H0YIS7 233 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 H0YIV9 168 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 C19orf84I3L1E1 186 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 I3L4J1 428 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 PSMD11O00231 422 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 RFXANKO14593 260 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 TOR1AO14656 332 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 ZW10O43264 779 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 HCRTO43612 131 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 SPOPO43791 374 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 PGLYRP1O75594 196 aaPredicted RBP-0.07□□□□□ -2.42
VPS35-212ENST00000640313 ZMPSTE24O75844 475 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 CIAO1O76071 339 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 IGKV2D-40P01614 121 aaPredicted RBP-0.07□□□□□ -2.42
VPS35-212ENST00000640313 IGLV3-27P01718 113 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 IGHV1-69P01742 117 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 CRYBA1P05813 215 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 OR4A8P0C604 315 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 STAG3L3P0CL85 134 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 SFTPCP11686 197 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 RNASE3P12724 160 aaKnown RBP-0.07□□□□□ -2.42
VPS35-212ENST00000640313 CCL5P13501 91 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 SPNP16150 400 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 SLC25A16P16260 332 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 GPX2P18283 190 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 NPPCP23582 126 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 CRHBPP24387 322 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 CDK2P24941 298 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 GABRA3P34903 492 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 OR1E2P47887 323 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 XCL1P47992 114 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 SERPINB10P48595 397 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 RPL14P50914 215 aaKnown RBP-0.07□□□□□ -2.42
VPS35-212ENST00000640313 BCAP31P51572 246 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 RBM11P57052 281 aaKnown RBP-0.07□□□□□ -2.42
VPS35-212ENST00000640313 TSPAN5P62079 268 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 FAM3AP98173 230 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 CD164Q04900 197 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 SLC38A11Q08AI6 406 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 STX4Q12846 297 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 UAP1Q16222 522 aaPredicted RBP-0.07□□□□□ -2.42
VPS35-212ENST00000640313 NKAIN1Q4KMZ8 207 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 TMEM155Q4W5P6 130 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 CENPWQ5EE01 88 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 RESP18Q5W5W9 173 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 FP248Q71RG6 208 aaPredicted RBP-0.07□□□□□ -2.42
VPS35-212ENST00000640313 OLIG3Q7RTU3 272 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 SPATA12Q7Z6I5 190 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 MTERF4Q7Z6M4 381 aaKnown RBP-0.07□□□□□ -2.42
VPS35-212ENST00000640313 TMCO2Q7Z6W1 182 aaPredicted RBP-0.07□□□□□ -2.42
VPS35-212ENST00000640313 LRRC28Q86X40 367 aaPredicted RBP-0.07□□□□□ -2.42
VPS35-212ENST00000640313 DOLPP1Q86YN1 238 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 PLCZ1Q86YW0 608 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 SBSPONQ8IVN8 264 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 C10orf107Q8IVU9 208 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 ARHGAP18Q8N392 663 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 PACRGLQ8N7B6 248 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 CNEP1R1Q8N9A8 125 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 TMEM75Q8N9X5 138 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 ACBD4Q8NC06 268 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 BBOF1Q8ND07 529 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 OR11H1Q8NG94 326 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 OR1L8Q8NGR8 309 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 OR13C9Q8NGT0 318 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 OR2Y1Q8NGV0 311 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 OR10A6Q8NH74 314 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 CLDND2Q8NHS1 167 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 LHFPL5Q8TAF8 219 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 FAM45AQ8TCE6 357 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 LGALS14Q8TCE9 139 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 AGR3Q8TD06 166 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 SMCR5Q8TEV8 140 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 PDCD6IPQ8WUM4 868 aaKnown RBP-0.07□□□□□ -2.42
VPS35-212ENST00000640313 RNF133Q8WVZ7 376 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 NELFBQ8WX92 580 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 RNASE6Q93091 150 aaKnown RBP-0.07□□□□□ -2.42
VPS35-212ENST00000640313 KIAA1143Q96AT1 154 aaPredicted RBP-0.07□□□□□ -2.42
VPS35-212ENST00000640313 TAMM41Q96BW9 452 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 GALMQ96C23 342 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 VAT1Q99536 393 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 PITX2Q99697 317 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 FAAP24Q9BTP7 215 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 CHST5Q9GZS9 411 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 GTSF1LQ9H1H1 148 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 SYT4Q9H2B2 425 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 ANKHQ9HCJ1 492 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 MED9Q9NWA0 146 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 SDHAF2Q9NX18 166 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 TAS2R13Q9NYV9 303 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 MAT2BQ9NZL9 334 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 VAPAQ9P0L0 249 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 CLEC2DQ9UHP7 191 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 HHLA2Q9UM44 414 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 PSMD13Q9UNM6 376 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 HHLA3Q9XRX5 114 aa-0.07□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms