RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 B4DEV8 164 aa10.77□□□□□ -0.69
LINC00540-203ENST00000631321 NXPH2O95156 264 aa10.77□□□□□ -0.69
LINC00540-203ENST00000631321 METTL15P1P0C7V9 234 aa10.77□□□□□ -0.69
LINC00540-203ENST00000631321 CEACAM6P40199 344 aa10.77□□□□□ -0.69
LINC00540-203ENST00000631321 GLIPR1P48060 266 aa10.77□□□□□ -0.69
LINC00540-203ENST00000631321 ZNF726P1Q15940 193 aa10.77□□□□□ -0.69
LINC00540-203ENST00000631321 ZBTB34Q8NCN2 500 aa10.77□□□□□ -0.69
LINC00540-203ENST00000631321 LOXL4Q96JB6 756 aa10.77□□□□□ -0.69
LINC00540-203ENST00000631321 KCNS2Q9ULS6 477 aa10.77□□□□□ -0.69
LINC00540-203ENST00000631321 ARHGAP21Q5T5U3 1957 aa10.76□□□□□ -0.69
LINC00540-203ENST00000631321 CDX4O14627 284 aaPredicted RBP10.76□□□□□ -0.69
LINC00540-203ENST00000631321 SP9P0CG40 484 aa10.76□□□□□ -0.69
LINC00540-203ENST00000631321 BCL2P10415 239 aa10.76□□□□□ -0.69
LINC00540-203ENST00000631321 NQO2P16083 231 aa10.76□□□□□ -0.69
LINC00540-203ENST00000631321 SELEP16581 610 aa10.76□□□□□ -0.69
LINC00540-203ENST00000631321 PMS2P11Q13670 270 aa10.76□□□□□ -0.69
LINC00540-203ENST00000631321 ELOBQ15370 118 aa10.76□□□□□ -0.69
LINC00540-203ENST00000631321 FAM90A2PQ658T7 463 aa10.76□□□□□ -0.69
LINC00540-203ENST00000631321 PRR18Q8N4B5 295 aa10.76□□□□□ -0.69
LINC00540-203ENST00000631321 NANPQ8TBE9 248 aa10.76□□□□□ -0.69
LINC00540-203ENST00000631321 TCTEX1D2Q8WW35 142 aa10.76□□□□□ -0.69
LINC00540-203ENST00000631321 TOLLIPQ9H0E2 274 aa10.76□□□□□ -0.69
LINC00540-203ENST00000631321 CDH20Q9HBT6 801 aa10.76□□□□□ -0.69
LINC00540-203ENST00000631321 RBM7Q9Y580 266 aaKnown RBP10.76□□□□□ -0.69
LINC00540-203ENST00000631321 MMP24Q9Y5R2 645 aa10.76□□□□□ -0.69
LINC00540-203ENST00000631321 CDIPTO14735 213 aa10.76□□□□□ -0.69
LINC00540-203ENST00000631321 P0C879 139 aa10.76□□□□□ -0.69
LINC00540-203ENST00000631321 EIF2S3P41091 472 aaKnown RBP10.76□□□□□ -0.69
LINC00540-203ENST00000631321 CEBPGP53567 150 aa10.76□□□□□ -0.69
LINC00540-203ENST00000631321 EIF4EBP1Q13541 118 aaPredicted RBP10.76□□□□□ -0.69
LINC00540-203ENST00000631321 ZNF787Q6DD87 383 aa10.76□□□□□ -0.69
LINC00540-203ENST00000631321 SLC16A13Q7RTY0 426 aa10.76□□□□□ -0.69
LINC00540-203ENST00000631321 Q8WTZ3 238 aa10.76□□□□□ -0.69
LINC00540-203ENST00000631321 WDR61Q9GZS3 305 aaKnown RBP10.76□□□□□ -0.69
LINC00540-203ENST00000631321 GNG13Q9P2W3 67 aa10.76□□□□□ -0.69
LINC00540-203ENST00000631321 WDR1O75083 606 aa10.75□□□□□ -0.69
LINC00540-203ENST00000631321 HAND1O96004 215 aa10.75□□□□□ -0.69
LINC00540-203ENST00000631321 ZNF806P0C7X5 589 aa10.75□□□□□ -0.69
LINC00540-203ENST00000631321 IGHV1-2P23083 117 aa10.75□□□□□ -0.69
LINC00540-203ENST00000631321 ERVS71-1P61550 626 aa10.75□□□□□ -0.69
LINC00540-203ENST00000631321 TGFBR3Q03167 851 aa10.75□□□□□ -0.69
LINC00540-203ENST00000631321 MSMO1Q15800 293 aa10.75□□□□□ -0.69
LINC00540-203ENST00000631321 ALKBH6Q3KRA9 238 aa10.75□□□□□ -0.69
LINC00540-203ENST00000631321 TMEM14EPQ6UXP3 125 aa10.75□□□□□ -0.69
LINC00540-203ENST00000631321 FGFRL1Q8N441 504 aa10.75□□□□□ -0.69
LINC00540-203ENST00000631321 ZNF645Q8N7E2 425 aa10.75□□□□□ -0.69
LINC00540-203ENST00000631321 SLC25A40Q8TBP6 338 aa10.75□□□□□ -0.69
LINC00540-203ENST00000631321 PINX1Q96BK5 328 aaKnown RBP10.75□□□□□ -0.69
LINC00540-203ENST00000631321 RCC1LQ96I51 464 aaKnown RBP10.75□□□□□ -0.69
LINC00540-203ENST00000631321 VSIRQ9H7M9 311 aa10.75□□□□□ -0.69
LINC00540-203ENST00000631321 OR14J1Q9UGF5 321 aa10.75□□□□□ -0.69
LINC00540-203ENST00000631321 R4GN57 208 aa10.75□□□□□ -0.69
LINC00540-203ENST00000631321 TMEM30CPA0ZSE6 113 aa10.75□□□□□ -0.69
LINC00540-203ENST00000631321 CLN5O75503 358 aa10.75□□□□□ -0.69
LINC00540-203ENST00000631321 TNFSF15O95150 251 aa10.75□□□□□ -0.69
LINC00540-203ENST00000631321 RPS10P46783 165 aaKnown RBP10.75□□□□□ -0.69
LINC00540-203ENST00000631321 UBE2NP61088 152 aaKnown RBP10.75□□□□□ -0.69
LINC00540-203ENST00000631321 PNRC1Q12796 327 aaPredicted RBP10.75□□□□□ -0.69
LINC00540-203ENST00000631321 PSG7Q13046 419 aa10.75□□□□□ -0.69
LINC00540-203ENST00000631321 TMEM41BQ5BJD5 291 aa10.75□□□□□ -0.69
LINC00540-203ENST00000631321 CENPVQ7Z7K6 275 aaPredicted RBP10.75□□□□□ -0.69
LINC00540-203ENST00000631321 VASH2Q86V25 355 aa10.75□□□□□ -0.69
LINC00540-203ENST00000631321 CA5BP1Q8WTZ4 195 aa10.75□□□□□ -0.69
LINC00540-203ENST00000631321 OR4C12Q96R67 309 aa10.75□□□□□ -0.69
LINC00540-203ENST00000631321 P2RX4Q99571 388 aa10.75□□□□□ -0.69
LINC00540-203ENST00000631321 TMPRSS5Q9H3S3 457 aa10.75□□□□□ -0.69
LINC00540-203ENST00000631321 TIMM9Q9Y5J7 89 aa10.75□□□□□ -0.69
LINC00540-203ENST00000631321 MED13Q9UHV7 2174 aa10.74□□□□□ -0.69
LINC00540-203ENST00000631321 GPR179Q6PRD1 2367 aa10.74□□□□□ -0.69
LINC00540-203ENST00000631321 CXCL1P09341 107 aa10.74□□□□□ -0.69
LINC00540-203ENST00000631321 ZNF16P17020 682 aaPredicted RBP10.74□□□□□ -0.69
LINC00540-203ENST00000631321 HOXA5P20719 270 aa10.74□□□□□ -0.69
LINC00540-203ENST00000631321 IDH3GP51553 393 aaPredicted RBP10.74□□□□□ -0.69
LINC00540-203ENST00000631321 SOX8P57073 446 aa10.74□□□□□ -0.69
LINC00540-203ENST00000631321 ERVFRD-1P60508 538 aa10.74□□□□□ -0.69
LINC00540-203ENST00000631321 SLC35E4Q6ICL7 350 aa10.74□□□□□ -0.69
LINC00540-203ENST00000631321 INO80CQ6PI98 192 aaPredicted RBP10.74□□□□□ -0.69
LINC00540-203ENST00000631321 FIP1L1Q6UN15 594 aaKnown RBP10.74□□□□□ -0.69
LINC00540-203ENST00000631321 SSX7Q7RTT5 188 aa10.74□□□□□ -0.69
LINC00540-203ENST00000631321 LILRB2Q8N423 598 aa10.74□□□□□ -0.69
LINC00540-203ENST00000631321 TMEM178AQ8NBL3 297 aa10.74□□□□□ -0.69
LINC00540-203ENST00000631321 UBALD1Q8TB05 177 aa10.74□□□□□ -0.69
LINC00540-203ENST00000631321 ZNF665Q9H7R5 613 aa10.74□□□□□ -0.69
LINC00540-203ENST00000631321 TMEM242Q9NWH2 141 aa10.74□□□□□ -0.69
LINC00540-203ENST00000631321 KCNIP1Q9NZI2 227 aa10.74□□□□□ -0.69
LINC00540-203ENST00000631321 CLCF1Q9UBD9 225 aa10.74□□□□□ -0.69
LINC00540-203ENST00000631321 HSPB7Q9UBY9 170 aa10.74□□□□□ -0.69
LINC00540-203ENST00000631321 PSPNO60542 156 aa10.74□□□□□ -0.69
LINC00540-203ENST00000631321 TNFRSF9Q07011 255 aa10.74□□□□□ -0.69
LINC00540-203ENST00000631321 KIAA0141Q14154 515 aaPredicted RBP10.74□□□□□ -0.69
LINC00540-203ENST00000631321 GUSBP1Q15486 140 aa10.74□□□□□ -0.69
LINC00540-203ENST00000631321 ZNF343Q6P1L6 599 aa10.74□□□□□ -0.69
LINC00540-203ENST00000631321 TAF15Q92804 592 aaKnown RBP eCLIP10.74□□□□□ -0.69
LINC00540-203ENST00000631321 MED12LQ86YW9 2145 aa10.74□□□□□ -0.69
LINC00540-203ENST00000631321 C12orf77C9JDV5 145 aa10.73□□□□□ -0.69
LINC00540-203ENST00000631321 RND2P52198 227 aa10.73□□□□□ -0.69
LINC00540-203ENST00000631321 RAB11AP62491 216 aa10.73□□□□□ -0.69
LINC00540-203ENST00000631321 ARG2P78540 354 aa10.73□□□□□ -0.69
LINC00540-203ENST00000631321 SLC38A11Q08AI6 406 aa10.73□□□□□ -0.69
LINC00540-203ENST00000631321 SPANXN5Q5MJ07 72 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms