RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 PPP1R27Q86WC6 154 aa11.23□□□□□ -0.61
PNKP-218ENST00000625299 ODF3L1Q8IXM7 274 aa11.23□□□□□ -0.61
PNKP-218ENST00000625299 SYS1Q8N2H4 156 aa11.23□□□□□ -0.61
PNKP-218ENST00000625299 TRUB1Q8WWH5 349 aaKnown RBP11.23□□□□□ -0.61
PNKP-218ENST00000625299 RGP1Q92546 391 aaPredicted RBP11.23□□□□□ -0.61
PNKP-218ENST00000625299 MRPS24Q96EL2 167 aaKnown RBP11.23□□□□□ -0.61
PNKP-218ENST00000625299 CLCC1Q96S66 551 aa11.23□□□□□ -0.61
PNKP-218ENST00000625299 MYCBPQ99417 103 aaPredicted RBP11.23□□□□□ -0.61
PNKP-218ENST00000625299 TAF9BQ9HBM6 251 aa11.23□□□□□ -0.61
PNKP-218ENST00000625299 SPACA1Q9HBV2 294 aa11.23□□□□□ -0.61
PNKP-218ENST00000625299 RNF150Q9ULK6 438 aa11.23□□□□□ -0.61
PNKP-218ENST00000625299 OAZ3Q9UMX2 235 aa11.23□□□□□ -0.61
PNKP-218ENST00000625299 EXOGQ9Y2C4 368 aaKnown RBP11.23□□□□□ -0.61
PNKP-218ENST00000625299 SAC3D1A6NKF1 404 aa11.22□□□□□ -0.61
PNKP-218ENST00000625299 SNTNA6NMZ2 147 aa11.22□□□□□ -0.61
PNKP-218ENST00000625299 H0Y980 276 aa11.22□□□□□ -0.61
PNKP-218ENST00000625299 ZNF780AO75290 641 aaPredicted RBP11.22□□□□□ -0.61
PNKP-218ENST00000625299 GTF2A1P52655 376 aaPredicted RBP11.22□□□□□ -0.61
PNKP-218ENST00000625299 CRIP2P52943 208 aaPredicted RBP11.22□□□□□ -0.61
PNKP-218ENST00000625299 RAB40BQ12829 278 aa11.22□□□□□ -0.61
PNKP-218ENST00000625299 MEDAGQ5VYS4 303 aa11.22□□□□□ -0.61
PNKP-218ENST00000625299 TRAT1Q6PIZ9 186 aa11.22□□□□□ -0.61
PNKP-218ENST00000625299 FAM131AQ6UXB0 335 aa11.22□□□□□ -0.61
PNKP-218ENST00000625299 FRAS1Q86XX4 4008 aa11.22□□□□□ -0.61
PNKP-218ENST00000625299 TMEM106AQ96A25 262 aa11.22□□□□□ -0.61
PNKP-218ENST00000625299 ORAI1Q96D31 301 aa11.22□□□□□ -0.61
PNKP-218ENST00000625299 RHOVQ96L33 236 aa11.22□□□□□ -0.61
PNKP-218ENST00000625299 RDH12Q96NR8 316 aa11.22□□□□□ -0.61
PNKP-218ENST00000625299 TMEM138Q9NPI0 162 aa11.22□□□□□ -0.61
PNKP-218ENST00000625299 ZNF355PQ9NSJ1 428 aa11.22□□□□□ -0.61
PNKP-218ENST00000625299 KCNIP1Q9NZI2 227 aa11.22□□□□□ -0.61
PNKP-218ENST00000625299 CNOT2Q9NZN8 540 aaKnown RBP11.22□□□□□ -0.61
PNKP-218ENST00000625299 GAB2Q9UQC2 676 aa11.22□□□□□ -0.61
PNKP-218ENST00000625299 AP4S1Q9Y587 144 aa11.22□□□□□ -0.61
PNKP-218ENST00000625299 NUBP2Q9Y5Y2 271 aa11.22□□□□□ -0.61
PNKP-218ENST00000625299 SAA2-SAA4A0A096LPE2 208 aa11.21□□□□□ -0.61
PNKP-218ENST00000625299 UBE2QL1A1L167 161 aa11.21□□□□□ -0.61
PNKP-218ENST00000625299 ANKRD34BA5PLL1 514 aa11.21□□□□□ -0.61
PNKP-218ENST00000625299 FCN1O00602 326 aa11.21□□□□□ -0.61
PNKP-218ENST00000625299 RRHO14718 337 aa11.21□□□□□ -0.61
PNKP-218ENST00000625299 ARPC1BO15143 372 aaKnown RBP11.21□□□□□ -0.61
PNKP-218ENST00000625299 SLC25A17O43808 307 aa11.21□□□□□ -0.61
PNKP-218ENST00000625299 SAA2P0DJI9 122 aaPredicted RBP11.21□□□□□ -0.61
PNKP-218ENST00000625299 EGR2P11161 476 aaPredicted RBP11.21□□□□□ -0.61
PNKP-218ENST00000625299 ZP3P21754 424 aa11.21□□□□□ -0.61
PNKP-218ENST00000625299 BDKRB2P30411 391 aa11.21□□□□□ -0.61
PNKP-218ENST00000625299 MRPL28Q13084 256 aaKnown RBP11.21□□□□□ -0.61
PNKP-218ENST00000625299 ZNF833PQ6ZTB9 187 aa11.21□□□□□ -0.61
PNKP-218ENST00000625299 LFNGQ8NES3 379 aa11.21□□□□□ -0.61
PNKP-218ENST00000625299 GPR148Q8TDV2 347 aa11.21□□□□□ -0.61
PNKP-218ENST00000625299 CYYR1Q96J86 154 aa11.21□□□□□ -0.61
PNKP-218ENST00000625299 ZNF184Q99676 751 aaPredicted RBP11.21□□□□□ -0.61
PNKP-218ENST00000625299 RANGRFQ9HD47 186 aaPredicted RBP11.21□□□□□ -0.61
PNKP-218ENST00000625299 ERVK13-1Q9NX77 482 aa11.21□□□□□ -0.61
PNKP-218ENST00000625299 RCC2Q9P258 522 aaKnown RBP11.21□□□□□ -0.61
PNKP-218ENST00000625299 JPT1Q9UK76 154 aa11.21□□□□□ -0.61
PNKP-218ENST00000625299 PEX16Q9Y5Y5 336 aa11.21□□□□□ -0.61
PNKP-218ENST00000625299 CEPT1Q9Y6K0 416 aa11.21□□□□□ -0.61
PNKP-218ENST00000625299 RBMY1BA6NDE4 496 aaKnown RBP11.2□□□□□ -0.62
PNKP-218ENST00000625299 RBMY1EA6NEQ0 496 aaKnown RBP11.2□□□□□ -0.62
PNKP-218ENST00000625299 RGS11O94810 467 aa11.2□□□□□ -0.62
PNKP-218ENST00000625299 MAS1P04201 325 aa11.2□□□□□ -0.62
PNKP-218ENST00000625299 RBMY1DP0C7P1 496 aaKnown RBP11.2□□□□□ -0.62
PNKP-218ENST00000625299 SNRPGP62308 76 aaKnown RBP11.2□□□□□ -0.62
PNKP-218ENST00000625299 CD200R1LQ6Q8B3 271 aa11.2□□□□□ -0.62
PNKP-218ENST00000625299 GLDNQ6ZMI3 551 aaPredicted RBP11.2□□□□□ -0.62
PNKP-218ENST00000625299 OR2AK2Q8NG84 335 aa11.2□□□□□ -0.62
PNKP-218ENST00000625299 OR9G4Q8NGQ1 327 aa11.2□□□□□ -0.62
PNKP-218ENST00000625299 HIPK2Q9H2X6 1198 aa11.2□□□□□ -0.62
PNKP-218ENST00000625299 SLA2Q9H6Q3 261 aa11.2□□□□□ -0.62
PNKP-218ENST00000625299 PLEKHA3Q9HB20 300 aa11.2□□□□□ -0.62
PNKP-218ENST00000625299 C13orf42A0A1B0GVH6 325 aa11.19□□□□□ -0.62
PNKP-218ENST00000625299 H7C2Y5 167 aa11.19□□□□□ -0.62
PNKP-218ENST00000625299 ATP8B1O43520 1251 aa11.19□□□□□ -0.62
PNKP-218ENST00000625299 FADS2O95864 444 aaKnown RBP11.19□□□□□ -0.62
PNKP-218ENST00000625299 GSTP1P09211 210 aaKnown RBP11.19□□□□□ -0.62
PNKP-218ENST00000625299 FCGR1AP12314 374 aa11.19□□□□□ -0.62
PNKP-218ENST00000625299 SYNJ2BPP57105 145 aa11.19□□□□□ -0.62
PNKP-218ENST00000625299 RIPK1Q13546 671 aa11.19□□□□□ -0.62
PNKP-218ENST00000625299 ZIK1Q3SY52 487 aaPredicted RBP11.19□□□□□ -0.62
PNKP-218ENST00000625299 SLC25A30Q5SVS4 291 aa11.19□□□□□ -0.62
PNKP-218ENST00000625299 LCN12Q6JVE5 192 aa11.19□□□□□ -0.62
PNKP-218ENST00000625299 MUL1Q969V5 352 aa11.19□□□□□ -0.62
PNKP-218ENST00000625299 SLC7A6OSQ96CW6 309 aaPredicted RBP11.19□□□□□ -0.62
PNKP-218ENST00000625299 BANF2Q9H503 90 aa11.19□□□□□ -0.62
PNKP-218ENST00000625299 AMBNQ9NP70 447 aa11.19□□□□□ -0.62
PNKP-218ENST00000625299 ORC6Q9Y5N6 252 aa11.19□□□□□ -0.62
PNKP-218ENST00000625299 ST8SIA5O15466 376 aa11.18□□□□□ -0.62
PNKP-218ENST00000625299 YPEL1O60688 119 aa11.18□□□□□ -0.62
PNKP-218ENST00000625299 LY6G6CO95867 125 aa11.18□□□□□ -0.62
PNKP-218ENST00000625299 CA2P00918 260 aa11.18□□□□□ -0.62
PNKP-218ENST00000625299 TFAP2AP05549 437 aa11.18□□□□□ -0.62
PNKP-218ENST00000625299 GPR176Q14439 515 aa11.18□□□□□ -0.62
PNKP-218ENST00000625299 AKIRIN2Q53H80 203 aa11.18□□□□□ -0.62
PNKP-218ENST00000625299 RPL39P5Q59GN2 51 aa11.18□□□□□ -0.62
PNKP-218ENST00000625299 XAF1Q6GPH4 301 aa11.18□□□□□ -0.62
PNKP-218ENST00000625299 GLIPR1L1Q6UWM5 242 aa11.18□□□□□ -0.62
PNKP-218ENST00000625299 GAPTQ8N292 157 aa11.18□□□□□ -0.62
PNKP-218ENST00000625299 JAGN1Q8N5M9 183 aa11.18□□□□□ -0.62
PNKP-218ENST00000625299 GRPEL2Q8TAA5 225 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms