RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 PRR13Q9NZ81 148 aa11.75□□□□□ -0.53
USP39-220ENST00000613444 LPAR3Q9UBY5 353 aa11.75□□□□□ -0.53
USP39-220ENST00000613444 BOLA2-SMG1P6H3BVE0 249 aa11.74□□□□□ -0.53
USP39-220ENST00000613444 ERVFRD-1P60508 538 aa11.74□□□□□ -0.53
USP39-220ENST00000613444 WDR25Q64LD2 544 aaPredicted RBP11.74□□□□□ -0.53
USP39-220ENST00000613444 OR8B3Q8NGG8 313 aa11.74□□□□□ -0.53
USP39-220ENST00000613444 NINJ1Q92982 152 aa11.74□□□□□ -0.53
USP39-220ENST00000613444 C5orf30Q96GV9 206 aa11.74□□□□□ -0.53
USP39-220ENST00000613444 OR8B2Q96RD0 313 aa11.74□□□□□ -0.53
USP39-220ENST00000613444 GPHA2Q96T91 129 aa11.74□□□□□ -0.53
USP39-220ENST00000613444 IDI2-AS1Q9NZ38 188 aa11.74□□□□□ -0.53
USP39-220ENST00000613444 GCN1Q92616 2671 aaKnown RBP11.74□□□□□ -0.53
USP39-220ENST00000613444 MED13LQ71F56 2210 aa11.74□□□□□ -0.53
USP39-220ENST00000613444 TRBV23-1A0A0A0MS06 115 aa11.74□□□□□ -0.53
USP39-220ENST00000613444 GPR37O15354 613 aa11.74□□□□□ -0.53
USP39-220ENST00000613444 MPPED1O15442 326 aa11.74□□□□□ -0.53
USP39-220ENST00000613444 CD34P28906 385 aa11.74□□□□□ -0.53
USP39-220ENST00000613444 ZNF134P52741 427 aa11.74□□□□□ -0.53
USP39-220ENST00000613444 LIN54Q6MZP7 749 aa11.74□□□□□ -0.53
USP39-220ENST00000613444 SGPP2Q8IWX5 399 aa11.74□□□□□ -0.53
USP39-220ENST00000613444 FAM185AQ8N0U4 392 aa11.74□□□□□ -0.53
USP39-220ENST00000613444 C11orf42Q8N5U0 333 aa11.74□□□□□ -0.53
USP39-220ENST00000613444 ZNF714Q96N38 554 aa11.74□□□□□ -0.53
USP39-220ENST00000613444 RAB9BQ9NP90 201 aa11.74□□□□□ -0.53
USP39-220ENST00000613444 GNG12Q9UBI6 72 aa11.74□□□□□ -0.53
USP39-220ENST00000613444 MGAT4CQ9UBM8 478 aa11.74□□□□□ -0.53
USP39-220ENST00000613444 ANKRD17O75179 2603 aaKnown RBP11.73□□□□□ -0.53
USP39-220ENST00000613444 ABCA12Q86UK0 2595 aa11.73□□□□□ -0.53
USP39-220ENST00000613444 A0A0B4J2A0 478 aa11.73□□□□□ -0.53
USP39-220ENST00000613444 PGLYRP1O75594 196 aaPredicted RBP11.73□□□□□ -0.53
USP39-220ENST00000613444 PAX1P15863 534 aa11.73□□□□□ -0.53
USP39-220ENST00000613444 H2BFSP57053 126 aa11.73□□□□□ -0.53
USP39-220ENST00000613444 LY6G6FQ5SQ64 297 aa11.73□□□□□ -0.53
USP39-220ENST00000613444 PRAMEF5Q5TYX0 476 aa11.73□□□□□ -0.53
USP39-220ENST00000613444 HEPN1Q6WQI6 88 aa11.73□□□□□ -0.53
USP39-220ENST00000613444 NLRC3Q7RTR2 1065 aa11.73□□□□□ -0.53
USP39-220ENST00000613444 TBC1D26Q86UD7 250 aa11.73□□□□□ -0.53
USP39-220ENST00000613444 CCDC71LQ8N9Z2 235 aa11.73□□□□□ -0.53
USP39-220ENST00000613444 UXS1Q8NBZ7 420 aa11.73□□□□□ -0.53
USP39-220ENST00000613444 OR52M1Q8NGK5 317 aa11.73□□□□□ -0.53
USP39-220ENST00000613444 C8orf46Q8TAG6 207 aa11.73□□□□□ -0.53
USP39-220ENST00000613444 PHB2Q99623 299 aa11.73□□□□□ -0.53
USP39-220ENST00000613444 GAL3ST2Q9H3Q3 398 aa11.73□□□□□ -0.53
USP39-220ENST00000613444 PIPOXQ9P0Z9 390 aa11.73□□□□□ -0.53
USP39-220ENST00000613444 SHPKQ9UHJ6 478 aa11.73□□□□□ -0.53
USP39-220ENST00000613444 RPUSD1Q9UJJ7 312 aaKnown RBP11.73□□□□□ -0.53
USP39-220ENST00000613444 POLQO75417 2590 aa11.73□□□□□ -0.53
USP39-220ENST00000613444 APCP25054 2843 aa11.73□□□□□ -0.53
USP39-220ENST00000613444 TEX13DA0A0J9YY54 714 aaPredicted RBP11.72□□□□□ -0.53
USP39-220ENST00000613444 IFNA2P01563 188 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 OR5AC1P0C628 307 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 HLA-GP17693 338 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 KRTAP10-9P60411 292 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 EIF4EBP1Q13541 118 aaPredicted RBP11.72□□□□□ -0.53
USP39-220ENST00000613444 TMEM187Q14656 261 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 TMEM30BQ3MIR4 351 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 TCTE3Q8IZS6 198 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 DRAM1Q8N682 238 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 ZNF439Q8NDP4 499 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 OR10A7Q8NGE5 316 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 GLYATL2Q8WU03 294 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 WDR89Q96FK6 387 aaPredicted RBP11.72□□□□□ -0.53
USP39-220ENST00000613444 AKR1E2Q96JD6 320 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 TP53RKQ96S44 253 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 BPESC1Q9GZL8 116 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 OR2D2Q9H210 308 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 NARFLQ9H6Q4 476 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 RNF150Q9ULK6 438 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 ITGB1BP1O14713 200 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 SLC31A2O15432 143 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 ST8SIA5O15466 376 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 SLC22A5O76082 557 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 OR2A4O95047 310 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 HNRNPCP07910 306 aaKnown RBP eCLIP11.72□□□□□ -0.53
USP39-220ENST00000613444 SP6Q3SY56 376 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 DCAF12L2Q5VW00 463 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 ZNF645Q8N7E2 425 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 LY6G5BQ8NDX9 201 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 FAM216AQ8WUB2 273 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 LEAP2Q969E1 77 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 OR2A7Q96R45 310 aa11.72□□□□□ -0.53
USP39-220ENST00000613444 ZNF436Q9C0F3 470 aaPredicted RBP11.72□□□□□ -0.53
USP39-220ENST00000613444 C22orf46C9J442 243 aa11.71□□□□□ -0.53
USP39-220ENST00000613444 GOSR2O14653 212 aa11.71□□□□□ -0.53
USP39-220ENST00000613444 PHF1O43189 567 aaPredicted RBP11.71□□□□□ -0.53
USP39-220ENST00000613444 TNFSF12O43508 249 aa11.71□□□□□ -0.53
USP39-220ENST00000613444 PROP1O75360 226 aa11.71□□□□□ -0.53
USP39-220ENST00000613444 SIX6O95475 246 aa11.71□□□□□ -0.53
USP39-220ENST00000613444 IGHV3-7P01780 117 aa11.71□□□□□ -0.53
USP39-220ENST00000613444 MSMO1Q15800 293 aa11.71□□□□□ -0.53
USP39-220ENST00000613444 CT45A1Q5HYN5 189 aa11.71□□□□□ -0.53
USP39-220ENST00000613444 ZNF787Q6DD87 383 aa11.71□□□□□ -0.53
USP39-220ENST00000613444 CMTM1Q8IZ96 169 aa11.71□□□□□ -0.53
USP39-220ENST00000613444 CT45A3Q8NHU0 189 aa11.71□□□□□ -0.53
USP39-220ENST00000613444 EDARADDQ8WWZ3 215 aa11.71□□□□□ -0.53
USP39-220ENST00000613444 MSI2Q96DH6 328 aaKnown RBP11.71□□□□□ -0.53
USP39-220ENST00000613444 ABHD14BQ96IU4 210 aa11.71□□□□□ -0.53
USP39-220ENST00000613444 IFI27L2Q9H2X8 130 aa11.71□□□□□ -0.53
USP39-220ENST00000613444 PSG11Q9UQ72 335 aa11.71□□□□□ -0.53
USP39-220ENST00000613444 RBM7Q9Y580 266 aaKnown RBP11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms