RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 RCC2Q9P258 522 aaKnown RBP7.44□□□□□ -1.22
VRK3-224ENST00000601849 GHRLQ9UBU3 117 aa7.44□□□□□ -1.22
VRK3-224ENST00000601849 AASSQ9UDR5 926 aa7.44□□□□□ -1.22
VRK3-224ENST00000601849 FOXA2Q9Y261 457 aaPredicted RBP7.44□□□□□ -1.22
VRK3-224ENST00000601849 EXOSC1Q9Y3B2 195 aaKnown RBP7.44□□□□□ -1.22
VRK3-224ENST00000601849 IGHV7-81A0A0B4J1V7 117 aa7.43□□□□□ -1.22
VRK3-224ENST00000601849 A0A1W2PP11 408 aa7.43□□□□□ -1.22
VRK3-224ENST00000601849 UBE2QL1A1L167 161 aa7.43□□□□□ -1.22
VRK3-224ENST00000601849 RAB29O14966 203 aa7.43□□□□□ -1.22
VRK3-224ENST00000601849 OGG1O15527 345 aa7.43□□□□□ -1.22
VRK3-224ENST00000601849 CRTAPO75718 401 aaPredicted RBP7.43□□□□□ -1.22
VRK3-224ENST00000601849 HSPB1P04792 205 aaKnown RBP7.43□□□□□ -1.22
VRK3-224ENST00000601849 LIMS3P0CW19 117 aa7.43□□□□□ -1.22
VRK3-224ENST00000601849 LIMS4P0CW20 117 aa7.43□□□□□ -1.22
VRK3-224ENST00000601849 RCC1P18754 421 aaPredicted RBP7.43□□□□□ -1.22
VRK3-224ENST00000601849 GNB1P62873 340 aa7.43□□□□□ -1.22
VRK3-224ENST00000601849 ECSCRQ19T08 205 aa7.43□□□□□ -1.22
VRK3-224ENST00000601849 LY6G6FQ5SQ64 297 aa7.43□□□□□ -1.22
VRK3-224ENST00000601849 FAM71F2Q6NXP2 309 aa7.43□□□□□ -1.22
VRK3-224ENST00000601849 SGPP2Q8IWX5 399 aa7.43□□□□□ -1.22
VRK3-224ENST00000601849 MINDY2Q8NBR6 621 aa7.43□□□□□ -1.22
VRK3-224ENST00000601849 NPBQ8NG41 125 aa7.43□□□□□ -1.22
VRK3-224ENST00000601849 DLX4Q92988 240 aaPredicted RBP7.43□□□□□ -1.22
VRK3-224ENST00000601849 MUL1Q969V5 352 aa7.43□□□□□ -1.22
VRK3-224ENST00000601849 ISOC1Q96CN7 298 aa7.43□□□□□ -1.22
VRK3-224ENST00000601849 NEDD4LQ96PU5 975 aa7.43□□□□□ -1.22
VRK3-224ENST00000601849 CITED4Q96RK1 184 aa7.43□□□□□ -1.22
VRK3-224ENST00000601849 NABP2Q9BQ15 211 aa7.43□□□□□ -1.22
VRK3-224ENST00000601849 SLA2Q9H6Q3 261 aa7.43□□□□□ -1.22
VRK3-224ENST00000601849 MBNL3Q9NUK0 354 aaKnown RBP7.43□□□□□ -1.22
VRK3-224ENST00000601849 SACSQ9NZJ4 4579 aa7.43□□□□□ -1.22
VRK3-224ENST00000601849 H7C2Y5 167 aa7.42□□□□□ -1.22
VRK3-224ENST00000601849 PDCD6O75340 191 aa7.42□□□□□ -1.22
VRK3-224ENST00000601849 SC5DO75845 299 aa7.42□□□□□ -1.22
VRK3-224ENST00000601849 MAS1P04201 325 aa7.42□□□□□ -1.22
VRK3-224ENST00000601849 IFNA6P05013 189 aa7.42□□□□□ -1.22
VRK3-224ENST00000601849 LGALS1P09382 135 aaKnown RBP7.42□□□□□ -1.22
VRK3-224ENST00000601849 MGMTP16455 207 aa7.42□□□□□ -1.22
VRK3-224ENST00000601849 IGFBP3P17936 291 aaPredicted RBP7.42□□□□□ -1.22
VRK3-224ENST00000601849 BLVRBP30043 206 aaPredicted RBP7.42□□□□□ -1.22
VRK3-224ENST00000601849 ETV1P50549 477 aa7.42□□□□□ -1.22
VRK3-224ENST00000601849 TAS2R43P59537 309 aa7.42□□□□□ -1.22
VRK3-224ENST00000601849 ADARB1P78563 741 aaKnown RBP7.42□□□□□ -1.22
VRK3-224ENST00000601849 KIAA0141Q14154 515 aaPredicted RBP7.42□□□□□ -1.22
VRK3-224ENST00000601849 SRSF7Q16629 238 aaKnown RBP eCLIP7.42□□□□□ -1.22
VRK3-224ENST00000601849 TATDN3Q17R31 274 aa7.42□□□□□ -1.22
VRK3-224ENST00000601849 AKIRIN2Q53H80 203 aa7.42□□□□□ -1.22
VRK3-224ENST00000601849 ACTBL2Q562R1 376 aa7.42□□□□□ -1.22
VRK3-224ENST00000601849 C6orf141Q5SZD1 244 aa7.42□□□□□ -1.22
VRK3-224ENST00000601849 FAM53AQ6NSI3 398 aaPredicted RBP7.42□□□□□ -1.22
VRK3-224ENST00000601849 ACSM6Q6P461 480 aa7.42□□□□□ -1.22
VRK3-224ENST00000601849 ZNF833PQ6ZTB9 187 aa7.42□□□□□ -1.22
VRK3-224ENST00000601849 LYPD6Q86Y78 171 aa7.42□□□□□ -1.22
VRK3-224ENST00000601849 GAPTQ8N292 157 aa7.42□□□□□ -1.22
VRK3-224ENST00000601849 OR52L2PQ8NGH6 319 aa7.42□□□□□ -1.22
VRK3-224ENST00000601849 IL1F10Q8WWZ1 152 aa7.42□□□□□ -1.22
VRK3-224ENST00000601849 RGP1Q92546 391 aaPredicted RBP7.42□□□□□ -1.22
VRK3-224ENST00000601849 TMEM80Q96HE8 168 aa7.42□□□□□ -1.22
VRK3-224ENST00000601849 RNF5Q99942 180 aa7.42□□□□□ -1.22
VRK3-224ENST00000601849 UQCC2Q9BRT2 126 aa7.42□□□□□ -1.22
VRK3-224ENST00000601849 TOLLIPQ9H0E2 274 aa7.42□□□□□ -1.22
VRK3-224ENST00000601849 BANF2Q9H503 90 aa7.42□□□□□ -1.22
VRK3-224ENST00000601849 ZNF581Q9P0T4 197 aa7.42□□□□□ -1.22
VRK3-224ENST00000601849 STUB1Q9UNE7 303 aa7.42□□□□□ -1.22
VRK3-224ENST00000601849 A3GALT2U3KPV4 340 aa7.42□□□□□ -1.22
VRK3-224ENST00000601849 DYNC2H1Q8NCM8 4307 aaKnown RBP7.42□□□□□ -1.22
VRK3-224ENST00000601849 LYSTQ99698 3801 aa7.41□□□□□ -1.22
VRK3-224ENST00000601849 A0A0G2JLM5 398 aa7.41□□□□□ -1.22
VRK3-224ENST00000601849 OR5H14A6NHG9 310 aa7.41□□□□□ -1.22
VRK3-224ENST00000601849 H0Y980 276 aa7.41□□□□□ -1.22
VRK3-224ENST00000601849 RRHO14718 337 aa7.41□□□□□ -1.22
VRK3-224ENST00000601849 RBBP9O75884 186 aa7.41□□□□□ -1.22
VRK3-224ENST00000601849 NDUFA3O95167 84 aa7.41□□□□□ -1.22
VRK3-224ENST00000601849 TFAP2AP05549 437 aa7.41□□□□□ -1.22
VRK3-224ENST00000601849 UBBP0CG47 229 aa7.41□□□□□ -1.22
VRK3-224ENST00000601849 FSTP19883 344 aa7.41□□□□□ -1.22
VRK3-224ENST00000601849 ZP3P21754 424 aa7.41□□□□□ -1.22
VRK3-224ENST00000601849 MAPK3P27361 379 aaPredicted RBP7.41□□□□□ -1.22
VRK3-224ENST00000601849 PPP1CCP36873 323 aaKnown RBP7.41□□□□□ -1.22
VRK3-224ENST00000601849 SLURP1P55000 103 aa7.41□□□□□ -1.22
VRK3-224ENST00000601849 TPPP2P59282 170 aa7.41□□□□□ -1.22
VRK3-224ENST00000601849 CX3CL1P78423 397 aa7.41□□□□□ -1.22
VRK3-224ENST00000601849 OR2G6Q5TZ20 316 aa7.41□□□□□ -1.22
VRK3-224ENST00000601849 ASPHD1Q5U4P2 390 aa7.41□□□□□ -1.22
VRK3-224ENST00000601849 CD200R1LQ6Q8B3 271 aa7.41□□□□□ -1.22
VRK3-224ENST00000601849 UNQ5815/PRO19632Q6UWF5 114 aa7.41□□□□□ -1.22
VRK3-224ENST00000601849 PPP1R27Q86WC6 154 aa7.41□□□□□ -1.22
VRK3-224ENST00000601849 NKAIN3Q8N8D7 197 aa7.41□□□□□ -1.22
VRK3-224ENST00000601849 IL17DQ8TAD2 202 aa7.41□□□□□ -1.22
VRK3-224ENST00000601849 ARPC1AQ92747 370 aa7.41□□□□□ -1.22
VRK3-224ENST00000601849 RDH12Q96NR8 316 aa7.41□□□□□ -1.22
VRK3-224ENST00000601849 RSRP1Q9BUV0 290 aa7.41□□□□□ -1.22
VRK3-224ENST00000601849 MRPL20Q9BYC9 149 aaKnown RBP7.41□□□□□ -1.22
VRK3-224ENST00000601849 CHMP1AQ9HD42 196 aaPredicted RBP7.41□□□□□ -1.22
VRK3-224ENST00000601849 RANGRFQ9HD47 186 aaPredicted RBP7.41□□□□□ -1.22
VRK3-224ENST00000601849 ZNF355PQ9NSJ1 428 aa7.41□□□□□ -1.22
VRK3-224ENST00000601849 DIMT1Q9UNQ2 313 aaKnown RBP7.41□□□□□ -1.22
VRK3-224ENST00000601849 SAA2-SAA4A0A096LPE2 208 aa7.4□□□□□ -1.22
VRK3-224ENST00000601849 TRBV5-5A0A0J9YX44 114 aa7.4□□□□□ -1.22
VRK3-224ENST00000601849 LCE6AA0A183 80 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 103.4 ms