RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 S1PR3Q99500 378 aa15.51■□□□□ 0.07
UPF1-212ENST00000601689 CITED1Q99966 193 aa15.51■□□□□ 0.07
UPF1-212ENST00000601689 SLC23A1Q9UHI7 598 aa15.51■□□□□ 0.07
UPF1-212ENST00000601689 A0A0B4J203 849 aa15.5■□□□□ 0.07
UPF1-212ENST00000601689 FAM90A9PA6NNJ1 464 aa15.5■□□□□ 0.07
UPF1-212ENST00000601689 TRDCB7Z8K6 153 aa15.5■□□□□ 0.07
UPF1-212ENST00000601689 RAB27BO00194 218 aa15.5■□□□□ 0.07
UPF1-212ENST00000601689 IGKV1D-33P01593 117 aa15.5■□□□□ 0.07
UPF1-212ENST00000601689 IGKV1-33P01594 117 aa15.5■□□□□ 0.07
UPF1-212ENST00000601689 VSIG10L2P0DP72 767 aa15.5■□□□□ 0.07
UPF1-212ENST00000601689 GNB3P16520 340 aa15.5■□□□□ 0.07
UPF1-212ENST00000601689 CD1BP29016 333 aa15.5■□□□□ 0.07
UPF1-212ENST00000601689 EFNB2P52799 333 aa15.5■□□□□ 0.07
UPF1-212ENST00000601689 PITPNAQ00169 270 aa15.5■□□□□ 0.07
UPF1-212ENST00000601689 NR2C2APQ86WQ0 139 aa15.5■□□□□ 0.07
UPF1-212ENST00000601689 Q8N2B8 174 aa15.5■□□□□ 0.07
UPF1-212ENST00000601689 ZNF439Q8NDP4 499 aa15.5■□□□□ 0.07
UPF1-212ENST00000601689 HDHD3Q9BSH5 251 aaPredicted RBP15.5■□□□□ 0.07
UPF1-212ENST00000601689 RAB29O14966 203 aa15.49■□□□□ 0.07
UPF1-212ENST00000601689 LANCL1O43813 399 aa15.49■□□□□ 0.07
UPF1-212ENST00000601689 SNRPBP14678 240 aaKnown RBP15.49■□□□□ 0.07
UPF1-212ENST00000601689 CEACAM6P40199 344 aa15.49■□□□□ 0.07
UPF1-212ENST00000601689 ZNF134P52741 427 aa15.49■□□□□ 0.07
UPF1-212ENST00000601689 DIAPH2-AS1Q14236 149 aa15.49■□□□□ 0.07
UPF1-212ENST00000601689 HERPUD1Q15011 391 aa15.49■□□□□ 0.07
UPF1-212ENST00000601689 ABCA11PQ4W5N1 156 aa15.49■□□□□ 0.07
UPF1-212ENST00000601689 C9orf152Q5JTZ5 239 aa15.49■□□□□ 0.07
UPF1-212ENST00000601689 OR4A4PQ8NGN8 299 aa15.49■□□□□ 0.07
UPF1-212ENST00000601689 YIPF6Q96EC8 236 aa15.49■□□□□ 0.07
UPF1-212ENST00000601689 ZNF702PQ9H963 129 aa15.49■□□□□ 0.07
UPF1-212ENST00000601689 DIABLOQ9NR28 239 aa15.49■□□□□ 0.07
UPF1-212ENST00000601689 MFNGO00587 321 aa15.48■□□□□ 0.07
UPF1-212ENST00000601689 ITGB1BP1O14713 200 aa15.48■□□□□ 0.07
UPF1-212ENST00000601689 SLC31A2O15432 143 aa15.48■□□□□ 0.07
UPF1-212ENST00000601689 GSTP1P09211 210 aaKnown RBP15.48■□□□□ 0.07
UPF1-212ENST00000601689 BLCAPP62952 87 aa15.48■□□□□ 0.07
UPF1-212ENST00000601689 PLA2G7Q13093 441 aa15.48■□□□□ 0.07
UPF1-212ENST00000601689 HNF4GQ14541 408 aa15.48■□□□□ 0.07
UPF1-212ENST00000601689 GNMTQ14749 295 aa15.48■□□□□ 0.07
UPF1-212ENST00000601689 MOGAT2Q3SYC2 334 aa15.48■□□□□ 0.07
UPF1-212ENST00000601689 FAM71F2Q6NXP2 309 aa15.48■□□□□ 0.07
UPF1-212ENST00000601689 IZUMO1Q8IYV9 350 aa15.48■□□□□ 0.07
UPF1-212ENST00000601689 KLHDC1Q8N7A1 406 aa15.48■□□□□ 0.07
UPF1-212ENST00000601689 LGALS14Q8TCE9 139 aa15.48■□□□□ 0.07
UPF1-212ENST00000601689 CFHR4Q92496 578 aa15.48■□□□□ 0.07
UPF1-212ENST00000601689 ST6GALNAC6Q969X2 333 aa15.48■□□□□ 0.07
UPF1-212ENST00000601689 RNF167Q9H6Y7 350 aa15.48■□□□□ 0.07
UPF1-212ENST00000601689 RHBDL2Q9NX52 303 aa15.48■□□□□ 0.07
UPF1-212ENST00000601689 SIGLEC9Q9Y336 463 aa15.48■□□□□ 0.07
UPF1-212ENST00000601689 A0A0A6YYH2 397 aa15.47■□□□□ 0.07
UPF1-212ENST00000601689 A6NJ64 397 aa15.47■□□□□ 0.07
UPF1-212ENST00000601689 TRIM64CA6NLI5 447 aa15.47■□□□□ 0.07
UPF1-212ENST00000601689 NCBP2LA6PVI3 153 aaKnown RBP15.47■□□□□ 0.07
UPF1-212ENST00000601689 FGF16O43320 207 aa15.47■□□□□ 0.07
UPF1-212ENST00000601689 MOSP00540 346 aa15.47■□□□□ 0.07
UPF1-212ENST00000601689 FCGR3AP08637 254 aa15.47■□□□□ 0.07
UPF1-212ENST00000601689 SCTP09683 121 aa15.47■□□□□ 0.07
UPF1-212ENST00000601689 GNG2P59768 71 aa15.47■□□□□ 0.07
UPF1-212ENST00000601689 LSM3P62310 102 aaKnown RBP15.47■□□□□ 0.07
UPF1-212ENST00000601689 HABP2Q14520 560 aaPredicted RBP15.47■□□□□ 0.07
UPF1-212ENST00000601689 SRSF7Q16629 238 aaKnown RBP eCLIP15.47■□□□□ 0.07
UPF1-212ENST00000601689 CDNFQ49AH0 187 aa15.47■□□□□ 0.07
UPF1-212ENST00000601689 OR8H1Q8NGG4 311 aa15.47■□□□□ 0.07
UPF1-212ENST00000601689 OR10J5Q8NHC4 309 aa15.47■□□□□ 0.07
UPF1-212ENST00000601689 MRPS26Q9BYN8 205 aaKnown RBP15.47■□□□□ 0.07
UPF1-212ENST00000601689 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP15.47■□□□□ 0.07
UPF1-212ENST00000601689 ZNF221Q9UK13 617 aa15.47■□□□□ 0.07
UPF1-212ENST00000601689 TET2Q6N021 2002 aaPredicted RBP15.46■□□□□ 0.07
UPF1-212ENST00000601689 IGHV3-72A0A0B4J1Y9 119 aa15.46■□□□□ 0.07
UPF1-212ENST00000601689 FABP7O15540 132 aa15.46■□□□□ 0.07
UPF1-212ENST00000601689 CLEC2LP0C7M8 214 aa15.46■□□□□ 0.07
UPF1-212ENST00000601689 EBI3Q14213 229 aa15.46■□□□□ 0.07
UPF1-212ENST00000601689 PNLIPRP3Q17RR3 467 aa15.46■□□□□ 0.07
UPF1-212ENST00000601689 FAM53AQ6NSI3 398 aaPredicted RBP15.46■□□□□ 0.07
UPF1-212ENST00000601689 CENPVQ7Z7K6 275 aaPredicted RBP15.46■□□□□ 0.07
UPF1-212ENST00000601689 GINS4Q9BRT9 223 aa15.46■□□□□ 0.07
UPF1-212ENST00000601689 SPATA2Q9UM82 520 aa15.46■□□□□ 0.07
UPF1-212ENST00000601689 KCNK7Q9Y2U2 307 aa15.46■□□□□ 0.07
UPF1-212ENST00000601689 RBM7Q9Y580 266 aaKnown RBP15.46■□□□□ 0.07
UPF1-212ENST00000601689 TENM1Q9UKZ4 2725 aa15.45■□□□□ 0.06
UPF1-212ENST00000601689 DIRAS3O95661 229 aa15.45■□□□□ 0.06
UPF1-212ENST00000601689 DTYMKP23919 212 aa15.45■□□□□ 0.06
UPF1-212ENST00000601689 C2orf68Q2NKX9 166 aa15.45■□□□□ 0.06
UPF1-212ENST00000601689 PRR31Q5SQ13 230 aa15.45■□□□□ 0.06
UPF1-212ENST00000601689 HACD4Q5VWC8 232 aa15.45■□□□□ 0.06
UPF1-212ENST00000601689 EAF1Q96JC9 268 aaPredicted RBP15.45■□□□□ 0.06
UPF1-212ENST00000601689 RASL11BQ9BPW5 248 aa15.45■□□□□ 0.06
UPF1-212ENST00000601689 FUNDC2Q9BWH2 189 aa15.45■□□□□ 0.06
UPF1-212ENST00000601689 DCSTAMPQ9H295 470 aa15.45■□□□□ 0.06
UPF1-212ENST00000601689 BET1O15155 118 aa15.44■□□□□ 0.06
UPF1-212ENST00000601689 ST8SIA5O15466 376 aa15.44■□□□□ 0.06
UPF1-212ENST00000601689 FBXO24O75426 580 aa15.44■□□□□ 0.06
UPF1-212ENST00000601689 CTXN2P0C2S0 81 aa15.44■□□□□ 0.06
UPF1-212ENST00000601689 SRSF4Q08170 494 aaKnown RBP15.44■□□□□ 0.06
UPF1-212ENST00000601689 S100A16Q96FQ6 103 aaKnown RBP15.44■□□□□ 0.06
UPF1-212ENST00000601689 CYYR1Q96J86 154 aa15.44■□□□□ 0.06
UPF1-212ENST00000601689 SERTAD4Q9NUC0 356 aa15.44■□□□□ 0.06
UPF1-212ENST00000601689 SAA2-SAA4A0A096LPE2 208 aa15.43■□□□□ 0.06
UPF1-212ENST00000601689 SAA2P0DJI9 122 aaPredicted RBP15.43■□□□□ 0.06
UPF1-212ENST00000601689 MC5RP33032 325 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms