RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 ARL6IP1Q15041 203 aa13.48□□□□□ -0.25
TRIM28-215ENST00000601150 FBLN7Q53RD9 439 aa13.48□□□□□ -0.25
TRIM28-215ENST00000601150 IDNKQ5T6J7 187 aa13.48□□□□□ -0.25
TRIM28-215ENST00000601150 MOB3BQ86TA1 216 aa13.48□□□□□ -0.25
TRIM28-215ENST00000601150 LYG1Q8N1E2 194 aa13.48□□□□□ -0.25
TRIM28-215ENST00000601150 Q8N2B8 174 aa13.48□□□□□ -0.25
TRIM28-215ENST00000601150 SGMS2Q8NHU3 365 aa13.48□□□□□ -0.25
TRIM28-215ENST00000601150 CITED1Q99966 193 aa13.48□□□□□ -0.25
TRIM28-215ENST00000601150 ABHD14AQ9BUJ0 271 aa13.48□□□□□ -0.25
TRIM28-215ENST00000601150 ETV7Q9Y603 341 aa13.48□□□□□ -0.25
TRIM28-215ENST00000601150 A0A075B6Q4 140 aa13.47□□□□□ -0.25
TRIM28-215ENST00000601150 TMEM127O75204 238 aa13.47□□□□□ -0.25
TRIM28-215ENST00000601150 SCGNO76038 276 aa13.47□□□□□ -0.25
TRIM28-215ENST00000601150 SMIM18P0DKX4 95 aa13.47□□□□□ -0.25
TRIM28-215ENST00000601150 KRTAP10-3P60369 221 aa13.47□□□□□ -0.25
TRIM28-215ENST00000601150 LSM3P62310 102 aaKnown RBP13.47□□□□□ -0.25
TRIM28-215ENST00000601150 BLCAPP62952 87 aa13.47□□□□□ -0.25
TRIM28-215ENST00000601150 HES1Q14469 280 aa13.47□□□□□ -0.25
TRIM28-215ENST00000601150 HABP2Q14520 560 aaPredicted RBP13.47□□□□□ -0.25
TRIM28-215ENST00000601150 TGIF2LXQ8IUE1 241 aa13.47□□□□□ -0.25
TRIM28-215ENST00000601150 OR2AK2Q8NG84 335 aa13.47□□□□□ -0.25
TRIM28-215ENST00000601150 TRDCB7Z8K6 153 aa13.46□□□□□ -0.25
TRIM28-215ENST00000601150 M0QZK8 103 aa13.46□□□□□ -0.25
TRIM28-215ENST00000601150 LANCL1O43813 399 aa13.46□□□□□ -0.25
TRIM28-215ENST00000601150 IGKV1D-33P01593 117 aa13.46□□□□□ -0.25
TRIM28-215ENST00000601150 IGKV1-33P01594 117 aa13.46□□□□□ -0.25
TRIM28-215ENST00000601150 FCGR3AP08637 254 aa13.46□□□□□ -0.25
TRIM28-215ENST00000601150 SCTP09683 121 aa13.46□□□□□ -0.25
TRIM28-215ENST00000601150 TMEM11P17152 192 aa13.46□□□□□ -0.25
TRIM28-215ENST00000601150 TGFBR1P36897 503 aa13.46□□□□□ -0.25
TRIM28-215ENST00000601150 ARFRP1Q13795 201 aa13.46□□□□□ -0.25
TRIM28-215ENST00000601150 ARSJQ5FYB0 599 aaPredicted RBP13.46□□□□□ -0.25
TRIM28-215ENST00000601150 CROCCP3Q8IVE0 287 aa13.46□□□□□ -0.25
TRIM28-215ENST00000601150 IZUMO1Q8IYV9 350 aa13.46□□□□□ -0.25
TRIM28-215ENST00000601150 OR13F1Q8NGS4 319 aa13.46□□□□□ -0.25
TRIM28-215ENST00000601150 FUNDC2Q9BWH2 189 aa13.46□□□□□ -0.25
TRIM28-215ENST00000601150 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.46□□□□□ -0.25
TRIM28-215ENST00000601150 RHBDL2Q9NX52 303 aa13.46□□□□□ -0.25
TRIM28-215ENST00000601150 SLC23A1Q9UHI7 598 aa13.46□□□□□ -0.25
TRIM28-215ENST00000601150 MOB4Q9Y3A3 225 aa13.46□□□□□ -0.25
TRIM28-215ENST00000601150 HSPA12AO43301 675 aa13.45□□□□□ -0.26
TRIM28-215ENST00000601150 ZBTB25P24278 435 aa13.45□□□□□ -0.26
TRIM28-215ENST00000601150 TALDO1P37837 337 aa13.45□□□□□ -0.26
TRIM28-215ENST00000601150 CDNFQ49AH0 187 aa13.45□□□□□ -0.26
TRIM28-215ENST00000601150 SERTAD4Q9NUC0 356 aa13.45□□□□□ -0.26
TRIM28-215ENST00000601150 OR1A1Q9P1Q5 309 aa13.45□□□□□ -0.26
TRIM28-215ENST00000601150 IGHV3-72A0A0B4J1Y9 119 aa13.44□□□□□ -0.26
TRIM28-215ENST00000601150 ITGB1BP1O14713 200 aa13.44□□□□□ -0.26
TRIM28-215ENST00000601150 GSTP1P09211 210 aaKnown RBP13.44□□□□□ -0.26
TRIM28-215ENST00000601150 VSIG10L2P0DP72 767 aa13.44□□□□□ -0.26
TRIM28-215ENST00000601150 CD1BP29016 333 aa13.44□□□□□ -0.26
TRIM28-215ENST00000601150 RPS19P39019 145 aaKnown RBP13.44□□□□□ -0.26
TRIM28-215ENST00000601150 CEACAM6P40199 344 aa13.44□□□□□ -0.26
TRIM28-215ENST00000601150 EBI3Q14213 229 aa13.44□□□□□ -0.26
TRIM28-215ENST00000601150 HNF4GQ14541 408 aa13.44□□□□□ -0.26
TRIM28-215ENST00000601150 KIR2DS1Q14954 304 aa13.44□□□□□ -0.26
TRIM28-215ENST00000601150 ABCA11PQ4W5N1 156 aa13.44□□□□□ -0.26
TRIM28-215ENST00000601150 Q6ZS46 218 aa13.44□□□□□ -0.26
TRIM28-215ENST00000601150 ODF3L1Q8IXM7 274 aa13.44□□□□□ -0.26
TRIM28-215ENST00000601150 KLHDC1Q8N7A1 406 aa13.44□□□□□ -0.26
TRIM28-215ENST00000601150 OR4A4PQ8NGN8 299 aa13.44□□□□□ -0.26
TRIM28-215ENST00000601150 OR5H6Q8NGV6 325 aa13.44□□□□□ -0.26
TRIM28-215ENST00000601150 OR2T10Q8NGZ9 312 aa13.44□□□□□ -0.26
TRIM28-215ENST00000601150 EDARADDQ8WWZ3 215 aa13.44□□□□□ -0.26
TRIM28-215ENST00000601150 PHF21AQ96BD5 680 aa13.44□□□□□ -0.26
TRIM28-215ENST00000601150 EAF1Q96JC9 268 aaPredicted RBP13.44□□□□□ -0.26
TRIM28-215ENST00000601150 MRPS26Q9BYN8 205 aaKnown RBP13.44□□□□□ -0.26
TRIM28-215ENST00000601150 IGKV1-6A0A0C4DH72 117 aa13.43□□□□□ -0.26
TRIM28-215ENST00000601150 ST8SIA5O15466 376 aa13.43□□□□□ -0.26
TRIM28-215ENST00000601150 FABP7O15540 132 aa13.43□□□□□ -0.26
TRIM28-215ENST00000601150 AMY1AP04745 511 aa13.43□□□□□ -0.26
TRIM28-215ENST00000601150 AMY2AP04746 511 aa13.43□□□□□ -0.26
TRIM28-215ENST00000601150 VDAC2P45880 294 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-215ENST00000601150 SERPINB10P48595 397 aa13.43□□□□□ -0.26
TRIM28-215ENST00000601150 HERPUD1Q15011 391 aa13.43□□□□□ -0.26
TRIM28-215ENST00000601150 SRSF7Q16629 238 aaKnown RBP eCLIP13.43□□□□□ -0.269e-7■□□□□ 10.6
TRIM28-215ENST00000601150 HACD4Q5VWC8 232 aa13.43□□□□□ -0.26
TRIM28-215ENST00000601150 ZNF833PQ6ZTB9 187 aa13.43□□□□□ -0.26
TRIM28-215ENST00000601150 SLC25A38Q96DW6 304 aa13.43□□□□□ -0.26
TRIM28-215ENST00000601150 PARP12Q9H0J9 701 aaKnown RBP13.43□□□□□ -0.26
TRIM28-215ENST00000601150 IFI27L2Q9H2X8 130 aa13.43□□□□□ -0.26
TRIM28-215ENST00000601150 PIPOXQ9P0Z9 390 aa13.43□□□□□ -0.26
TRIM28-215ENST00000601150 ZNF230Q9UIE0 474 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-215ENST00000601150 ELF5Q9UKW6 265 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-215ENST00000601150 SPATA2Q9UM82 520 aa13.43□□□□□ -0.26
TRIM28-215ENST00000601150 TET2Q6N021 2002 aaPredicted RBP13.42□□□□□ -0.26
TRIM28-215ENST00000601150 SAA2-SAA4A0A096LPE2 208 aa13.42□□□□□ -0.26
TRIM28-215ENST00000601150 RAB29O14966 203 aa13.42□□□□□ -0.26
TRIM28-215ENST00000601150 FGF16O43320 207 aa13.42□□□□□ -0.26
TRIM28-215ENST00000601150 PEX14O75381 377 aa13.42□□□□□ -0.26
TRIM28-215ENST00000601150 MOSP00540 346 aa13.42□□□□□ -0.26
TRIM28-215ENST00000601150 SAA2P0DJI9 122 aaPredicted RBP13.42□□□□□ -0.26
TRIM28-215ENST00000601150 DTYMKP23919 212 aa13.42□□□□□ -0.26
TRIM28-215ENST00000601150 OR3A3P47888 321 aa13.42□□□□□ -0.26
TRIM28-215ENST00000601150 NCS1P62166 190 aa13.42□□□□□ -0.26
TRIM28-215ENST00000601150 PITPNAQ00169 270 aa13.42□□□□□ -0.26
TRIM28-215ENST00000601150 PNLIPRP3Q17RR3 467 aa13.42□□□□□ -0.26
TRIM28-215ENST00000601150 FAM71F2Q6NXP2 309 aa13.42□□□□□ -0.26
TRIM28-215ENST00000601150 Q6ZS49 121 aa13.42□□□□□ -0.26
TRIM28-215ENST00000601150 MAFIPQ8WZ33 124 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms