RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 TMEM203Q969S6 136 aa9.78□□□□□ -0.84
TRIM28-212ENST00000597995 RASL11BQ9BPW5 248 aa9.78□□□□□ -0.84
TRIM28-212ENST00000597995 CHCHD6Q9BRQ6 235 aa9.78□□□□□ -0.84
TRIM28-212ENST00000597995 MBNL3Q9NUK0 354 aaKnown RBP9.78□□□□□ -0.84
TRIM28-212ENST00000597995 GHRLQ9UBU3 117 aa9.78□□□□□ -0.84
TRIM28-212ENST00000597995 TRAPPC2LQ9UL33 140 aa9.78□□□□□ -0.84
TRIM28-212ENST00000597995 ZNF256Q9Y2P7 627 aaPredicted RBP9.78□□□□□ -0.84
TRIM28-212ENST00000597995 TPRKBQ9Y3C4 175 aa9.78□□□□□ -0.84
TRIM28-212ENST00000597995 SORL1Q92673 2214 aa9.78□□□□□ -0.84
TRIM28-212ENST00000597995 A0A0A6YYD4 124 aa9.77□□□□□ -0.85
TRIM28-212ENST00000597995 ZNF736B4DX44 427 aaPredicted RBP9.77□□□□□ -0.85
TRIM28-212ENST00000597995 SLC22A1O15245 554 aa9.77□□□□□ -0.85
TRIM28-212ENST00000597995 RGS10O43665 173 aa9.77□□□□□ -0.85
TRIM28-212ENST00000597995 PDCD6O75340 191 aa9.77□□□□□ -0.85
TRIM28-212ENST00000597995 MOSP00540 346 aa9.77□□□□□ -0.85
TRIM28-212ENST00000597995 IGF1P05019 195 aa9.77□□□□□ -0.85
TRIM28-212ENST00000597995 GLAP06280 429 aa9.77□□□□□ -0.85
TRIM28-212ENST00000597995 VDAC1P21796 283 aa9.77□□□□□ -0.85
TRIM28-212ENST00000597995 IL3RAP26951 378 aa9.77□□□□□ -0.85
TRIM28-212ENST00000597995 HTR2CP28335 458 aa9.77□□□□□ -0.85
TRIM28-212ENST00000597995 MAP2K4P45985 399 aa9.77□□□□□ -0.85
TRIM28-212ENST00000597995 HSD17B12Q53GQ0 312 aa9.77□□□□□ -0.85
TRIM28-212ENST00000597995 CT45A1Q5HYN5 189 aa9.77□□□□□ -0.85
TRIM28-212ENST00000597995 RBM48Q5RL73 367 aaKnown RBP9.77□□□□□ -0.85
TRIM28-212ENST00000597995 IZUMO2Q6UXV1 221 aa9.77□□□□□ -0.85
TRIM28-212ENST00000597995 CT45A3Q8NHU0 189 aa9.77□□□□□ -0.85
TRIM28-212ENST00000597995 RTN4IP1Q8WWV3 396 aaPredicted RBP9.77□□□□□ -0.85
TRIM28-212ENST00000597995 UFD1Q92890 307 aa9.77□□□□□ -0.85
TRIM28-212ENST00000597995 S1PR3Q99500 378 aa9.77□□□□□ -0.85
TRIM28-212ENST00000597995 ASCL2Q99929 193 aa9.77□□□□□ -0.85
TRIM28-212ENST00000597995 SULT4A1Q9BR01 284 aa9.77□□□□□ -0.85
TRIM28-212ENST00000597995 NICN1Q9BSH3 213 aa9.77□□□□□ -0.85
TRIM28-212ENST00000597995 ISYNA1Q9NPH2 558 aa9.77□□□□□ -0.85
TRIM28-212ENST00000597995 TMEM14DPA8MWL7 114 aa9.76□□□□□ -0.85
TRIM28-212ENST00000597995 TXNL1O43396 289 aa9.76□□□□□ -0.85
TRIM28-212ENST00000597995 CA11O75493 328 aa9.76□□□□□ -0.85
TRIM28-212ENST00000597995 HSMCR30P0CW71 290 aa9.76□□□□□ -0.85
TRIM28-212ENST00000597995 OR5H8P0DN80 308 aa9.76□□□□□ -0.85
TRIM28-212ENST00000597995 CPEP16870 476 aa9.76□□□□□ -0.85
TRIM28-212ENST00000597995 PSMB8P28062 276 aa9.76□□□□□ -0.85
TRIM28-212ENST00000597995 SOX6P35712 828 aa9.76□□□□□ -0.85
TRIM28-212ENST00000597995 ZNF137PP52743 207 aa9.76□□□□□ -0.85
TRIM28-212ENST00000597995 RPS27AP62979 156 aaKnown RBP9.76□□□□□ -0.85
TRIM28-212ENST00000597995 GNMTQ14749 295 aa9.76□□□□□ -0.85
TRIM28-212ENST00000597995 ZNF260Q3ZCT1 412 aa9.76□□□□□ -0.85
TRIM28-212ENST00000597995 GLT8D1Q68CQ7 371 aa9.76□□□□□ -0.85
TRIM28-212ENST00000597995 SLC25A48Q6ZT89 311 aaKnown RBP9.76□□□□□ -0.85
TRIM28-212ENST00000597995 PRSS48Q7RTY5 328 aa9.76□□□□□ -0.85
TRIM28-212ENST00000597995 PRR18Q8N4B5 295 aa9.76□□□□□ -0.85
TRIM28-212ENST00000597995 FAM71E2Q8N5Q1 922 aa9.76□□□□□ -0.85
TRIM28-212ENST00000597995 OR52L2PQ8NGH6 319 aa9.76□□□□□ -0.85
TRIM28-212ENST00000597995 OR10V1Q8NGI7 309 aa9.76□□□□□ -0.85
TRIM28-212ENST00000597995 MUC7Q8TAX7 377 aa9.76□□□□□ -0.85
TRIM28-212ENST00000597995 MYOZ3Q8TDC0 251 aa9.76□□□□□ -0.85
TRIM28-212ENST00000597995 TM2D1Q9BX74 207 aa9.76□□□□□ -0.85
TRIM28-212ENST00000597995 TAF9BQ9HBM6 251 aa9.76□□□□□ -0.85
TRIM28-212ENST00000597995 SMAD5-AS1Q9Y6J3 95 aa9.76□□□□□ -0.85
TRIM28-212ENST00000597995 SPINT2O43291 252 aa9.75□□□□□ -0.85
TRIM28-212ENST00000597995 UBBP0CG47 229 aa9.75□□□□□ -0.85
TRIM28-212ENST00000597995 RUNX1Q01196 453 aa9.75□□□□□ -0.85
TRIM28-212ENST00000597995 FABP5Q01469 135 aa9.75□□□□□ -0.85
TRIM28-212ENST00000597995 MLLT11Q13015 90 aaPredicted RBP9.75□□□□□ -0.85
TRIM28-212ENST00000597995 MORN2Q502X0 79 aa9.75□□□□□ -0.85
TRIM28-212ENST00000597995 CASC10Q5T4H9 136 aa9.75□□□□□ -0.85
TRIM28-212ENST00000597995 C6orf183Q5T699 404 aa9.75□□□□□ -0.85
TRIM28-212ENST00000597995 C6orf201Q7Z4U5 140 aa9.75□□□□□ -0.85
TRIM28-212ENST00000597995 OR11H1Q8NG94 326 aa9.75□□□□□ -0.85
TRIM28-212ENST00000597995 UBE2E2Q96LR5 201 aa9.75□□□□□ -0.85
TRIM28-212ENST00000597995 KCTD7Q96MP8 289 aa9.75□□□□□ -0.85
TRIM28-212ENST00000597995 HSPB9Q9BQS6 159 aa9.75□□□□□ -0.85
TRIM28-212ENST00000597995 FAAP24Q9BTP7 215 aa9.75□□□□□ -0.85
TRIM28-212ENST00000597995 CCDC90BQ9GZT6 254 aa9.75□□□□□ -0.85
TRIM28-212ENST00000597995 CST11Q9H112 138 aa9.75□□□□□ -0.85
TRIM28-212ENST00000597995 RAB9BQ9NP90 201 aa9.75□□□□□ -0.85
TRIM28-212ENST00000597995 GNG12Q9UBI6 72 aa9.75□□□□□ -0.85
TRIM28-212ENST00000597995 AK6Q9Y3D8 172 aaKnown RBP9.75□□□□□ -0.85
TRIM28-212ENST00000597995 FOXI3A8MTJ6 420 aaPredicted RBP9.74□□□□□ -0.85
TRIM28-212ENST00000597995 OR8U8P0C7N1 319 aa9.74□□□□□ -0.85
TRIM28-212ENST00000597995 F2RL1P55085 397 aa9.74□□□□□ -0.85
TRIM28-212ENST00000597995 P2RY14Q15391 338 aa9.74□□□□□ -0.85
TRIM28-212ENST00000597995 SSX1Q16384 188 aa9.74□□□□□ -0.85
TRIM28-212ENST00000597995 TMEM30BQ3MIR4 351 aa9.74□□□□□ -0.85
TRIM28-212ENST00000597995 STEAP3Q658P3 488 aa9.74□□□□□ -0.85
TRIM28-212ENST00000597995 ZNF429Q86V71 674 aa9.74□□□□□ -0.85
TRIM28-212ENST00000597995 ODF3L1Q8IXM7 274 aa9.74□□□□□ -0.85
TRIM28-212ENST00000597995 OR6M1Q8NGM8 313 aa9.74□□□□□ -0.85
TRIM28-212ENST00000597995 OR1N2Q8NGR9 330 aa9.74□□□□□ -0.85
TRIM28-212ENST00000597995 KCNG3Q8TAE7 436 aa9.74□□□□□ -0.85
TRIM28-212ENST00000597995 CNBD2Q96M20 576 aa9.74□□□□□ -0.85
TRIM28-212ENST00000597995 MGLLQ99685 303 aa9.74□□□□□ -0.85
TRIM28-212ENST00000597995 TMEM59Q9BXS4 323 aa9.74□□□□□ -0.85
TRIM28-212ENST00000597995 LPAR5Q9H1C0 372 aa9.74□□□□□ -0.85
TRIM28-212ENST00000597995 HUWE1Q7Z6Z7 4374 aaKnown RBP9.73□□□□□ -0.85
TRIM28-212ENST00000597995 SHISA3A0PJX4 238 aa9.73□□□□□ -0.85
TRIM28-212ENST00000597995 I3L521 148 aa9.73□□□□□ -0.85
TRIM28-212ENST00000597995 SLC17A2O00624 439 aa9.73□□□□□ -0.85
TRIM28-212ENST00000597995 SOCS1O15524 211 aa9.73□□□□□ -0.85
TRIM28-212ENST00000597995 BPNT1O95861 308 aa9.73□□□□□ -0.85
TRIM28-212ENST00000597995 NAPSAO96009 420 aa9.73□□□□□ -0.85
TRIM28-212ENST00000597995 PPIFP30405 207 aaKnown RBP9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms