RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 GPR12P47775 334 aa11.88□□□□□ -0.51
LIG1-215ENST00000597901 HSPA13P48723 471 aa11.88□□□□□ -0.51
LIG1-215ENST00000597901 SLC35B1P78383 322 aa11.88□□□□□ -0.51
LIG1-215ENST00000597901 FABP5Q01469 135 aa11.88□□□□□ -0.51
LIG1-215ENST00000597901 HMGN3Q15651 99 aa11.88□□□□□ -0.51
LIG1-215ENST00000597901 C2orf76Q3KRA6 126 aa11.88□□□□□ -0.51
LIG1-215ENST00000597901 ZNF880Q6PDB4 577 aa11.88□□□□□ -0.51
LIG1-215ENST00000597901 OR2W3Q7Z3T1 314 aa11.88□□□□□ -0.51
LIG1-215ENST00000597901 COMMD1Q8N668 190 aa11.88□□□□□ -0.51
LIG1-215ENST00000597901 CNBD2Q96M20 576 aa11.88□□□□□ -0.51
LIG1-215ENST00000597901 URM1Q9BTM9 101 aaKnown RBP11.88□□□□□ -0.51
LIG1-215ENST00000597901 ABHD14AQ9BUJ0 271 aa11.88□□□□□ -0.51
LIG1-215ENST00000597901 ABRACLQ9P1F3 81 aa11.88□□□□□ -0.51
LIG1-215ENST00000597901 AP4M1O00189 453 aa11.87□□□□□ -0.51
LIG1-215ENST00000597901 CALRP27797 417 aaKnown RBP11.87□□□□□ -0.51
LIG1-215ENST00000597901 TMEM50BP56557 158 aa11.87□□□□□ -0.51
LIG1-215ENST00000597901 RPL23AP62750 156 aaKnown RBP11.87□□□□□ -0.51
LIG1-215ENST00000597901 PNLIPRP3Q17RR3 467 aa11.87□□□□□ -0.51
LIG1-215ENST00000597901 FOXB2Q5VYV0 432 aa11.87□□□□□ -0.51
LIG1-215ENST00000597901 Q6ZPA2 131 aa11.87□□□□□ -0.51
LIG1-215ENST00000597901 OR51D1Q8NGF3 324 aa11.87□□□□□ -0.51
LIG1-215ENST00000597901 PHF21AQ96BD5 680 aa11.87□□□□□ -0.51
LIG1-215ENST00000597901 RITA1Q96K30 269 aa11.87□□□□□ -0.51
LIG1-215ENST00000597901 RIMS4Q9H426 269 aaPredicted RBP11.87□□□□□ -0.51
LIG1-215ENST00000597901 CHMP1AQ9HD42 196 aaPredicted RBP11.87□□□□□ -0.51
LIG1-215ENST00000597901 ACOT13Q9NPJ3 140 aa11.87□□□□□ -0.51
LIG1-215ENST00000597901 NECAP2Q9NVZ3 263 aa11.87□□□□□ -0.51
LIG1-215ENST00000597901 PLXNB1O43157 2135 aa11.86□□□□□ -0.51
LIG1-215ENST00000597901 OR3A3P47888 321 aa11.86□□□□□ -0.51
LIG1-215ENST00000597901 PSMD7P51665 324 aa11.86□□□□□ -0.51
LIG1-215ENST00000597901 CLDN12P56749 244 aa11.86□□□□□ -0.51
LIG1-215ENST00000597901 LSAMPQ13449 338 aa11.86□□□□□ -0.51
LIG1-215ENST00000597901 RAB11BQ15907 218 aa11.86□□□□□ -0.51
LIG1-215ENST00000597901 TEX38Q6PEX7 206 aa11.86□□□□□ -0.51
LIG1-215ENST00000597901 ZNF833PQ6ZTB9 187 aa11.86□□□□□ -0.51
LIG1-215ENST00000597901 C18orf65Q6ZTR6 163 aa11.86□□□□□ -0.51
LIG1-215ENST00000597901 SVOPQ8N4V2 548 aa11.86□□□□□ -0.51
LIG1-215ENST00000597901 FAM71E2Q8N5Q1 922 aa11.86□□□□□ -0.51
LIG1-215ENST00000597901 SETD6Q8TBK2 473 aa11.86□□□□□ -0.51
LIG1-215ENST00000597901 MRAPQ8TCY5 172 aa11.86□□□□□ -0.51
LIG1-215ENST00000597901 IL1F10Q8WWZ1 152 aa11.86□□□□□ -0.51
LIG1-215ENST00000597901 FAM3DQ96BQ1 224 aa11.86□□□□□ -0.51
LIG1-215ENST00000597901 NABP2Q9BQ15 211 aa11.86□□□□□ -0.51
LIG1-215ENST00000597901 GON7Q9BXV9 100 aa11.86□□□□□ -0.51
LIG1-215ENST00000597901 STEAP1Q9UHE8 339 aa11.86□□□□□ -0.51
LIG1-215ENST00000597901 AK3Q9UIJ7 227 aa11.86□□□□□ -0.51
LIG1-215ENST00000597901 HSF4Q9ULV5 492 aa11.86□□□□□ -0.51
LIG1-215ENST00000597901 RAB26Q9ULW5 256 aa11.86□□□□□ -0.51
LIG1-215ENST00000597901 V9GY05 133 aa11.86□□□□□ -0.51
LIG1-215ENST00000597901 TRBV6-6A0A0A6YYG2 114 aa11.85□□□□□ -0.51
LIG1-215ENST00000597901 FOXI3A8MTJ6 420 aaPredicted RBP11.85□□□□□ -0.51
LIG1-215ENST00000597901 SOX6P35712 828 aa11.85□□□□□ -0.51
LIG1-215ENST00000597901 VEGFCP49767 419 aa11.85□□□□□ -0.51
LIG1-215ENST00000597901 SSX1Q16384 188 aa11.85□□□□□ -0.51
LIG1-215ENST00000597901 MRPL41Q8IXM3 137 aaKnown RBP11.85□□□□□ -0.51
LIG1-215ENST00000597901 LINC00482Q8N8I6 264 aa11.85□□□□□ -0.51
LIG1-215ENST00000597901 OR2AK2Q8NG84 335 aa11.85□□□□□ -0.51
LIG1-215ENST00000597901 RCC1LQ96I51 464 aaKnown RBP11.85□□□□□ -0.51
LIG1-215ENST00000597901 HSPB9Q9BQS6 159 aa11.85□□□□□ -0.51
LIG1-215ENST00000597901 HDHD3Q9BSH5 251 aaPredicted RBP11.85□□□□□ -0.51
LIG1-215ENST00000597901 MRPL20Q9BYC9 149 aaKnown RBP11.85□□□□□ -0.51
LIG1-215ENST00000597901 LDLRAD4O15165 306 aa11.84□□□□□ -0.51
LIG1-215ENST00000597901 DENRO43583 198 aaKnown RBP11.84□□□□□ -0.51
LIG1-215ENST00000597901 MYCNOSP40205 109 aa11.84□□□□□ -0.51
LIG1-215ENST00000597901 RANBP1P43487 201 aa11.84□□□□□ -0.51
LIG1-215ENST00000597901 THBS3P49746 956 aa11.84□□□□□ -0.51
LIG1-215ENST00000597901 ACTBP60709 375 aa11.84□□□□□ -0.51
LIG1-215ENST00000597901 TBCEQ15813 527 aaPredicted RBP11.84□□□□□ -0.51
LIG1-215ENST00000597901 ETV3LQ6ZN32 361 aa11.84□□□□□ -0.51
LIG1-215ENST00000597901 C8orf86Q6ZUL3 223 aa11.84□□□□□ -0.51
LIG1-215ENST00000597901 ZNF367Q7RTV3 350 aa11.84□□□□□ -0.51
LIG1-215ENST00000597901 ARHGAP5-AS1Q96IT6 56 aa11.84□□□□□ -0.51
LIG1-215ENST00000597901 ZNF251Q9BRH9 671 aa11.84□□□□□ -0.51
LIG1-215ENST00000597901 PECRQ9BY49 303 aa11.84□□□□□ -0.51
LIG1-215ENST00000597901 IFI27L2Q9H2X8 130 aa11.84□□□□□ -0.51
LIG1-215ENST00000597901 AURKAIP1Q9NWT8 199 aaPredicted RBP11.84□□□□□ -0.51
LIG1-215ENST00000597901 PIPOXQ9P0Z9 390 aa11.84□□□□□ -0.51
LIG1-215ENST00000597901 BLOC1S6Q9UL45 172 aa11.84□□□□□ -0.51
LIG1-215ENST00000597901 NOTCH3Q9UM47 2321 aa11.84□□□□□ -0.51
LIG1-215ENST00000597901 SAA2-SAA4A0A096LPE2 208 aa11.83□□□□□ -0.52
LIG1-215ENST00000597901 TRAV1-2A0A0B4J238 106 aa11.83□□□□□ -0.52
LIG1-215ENST00000597901 NUDT19A8MXV4 375 aa11.83□□□□□ -0.52
LIG1-215ENST00000597901 ST8SIA5O15466 376 aa11.83□□□□□ -0.52
LIG1-215ENST00000597901 DUS4LO95620 317 aaKnown RBP11.83□□□□□ -0.52
LIG1-215ENST00000597901 RPLP1P05386 114 aaKnown RBP11.83□□□□□ -0.52
LIG1-215ENST00000597901 SCTP09683 121 aa11.83□□□□□ -0.52
LIG1-215ENST00000597901 SAA2P0DJI9 122 aaPredicted RBP11.83□□□□□ -0.52
LIG1-215ENST00000597901 SLC6A1P30531 599 aa11.83□□□□□ -0.52
LIG1-215ENST00000597901 CEACAM6P40199 344 aa11.83□□□□□ -0.52
LIG1-215ENST00000597901 MMDQ15546 238 aa11.83□□□□□ -0.52
LIG1-215ENST00000597901 PLAC9Q5JTB6 97 aa11.83□□□□□ -0.52
LIG1-215ENST00000597901 HES5Q5TA89 166 aa11.83□□□□□ -0.52
LIG1-215ENST00000597901 MOB1BQ7L9L4 216 aa11.83□□□□□ -0.52
LIG1-215ENST00000597901 ZNF695Q8IW36 515 aa11.83□□□□□ -0.52
LIG1-215ENST00000597901 PARP12Q9H0J9 701 aaKnown RBP11.83□□□□□ -0.52
LIG1-215ENST00000597901 Q9N2K0 584 aa11.83□□□□□ -0.52
LIG1-215ENST00000597901 SLC23A1Q9UHI7 598 aa11.83□□□□□ -0.52
LIG1-215ENST00000597901 RAB22AQ9UL26 194 aa11.83□□□□□ -0.52
LIG1-215ENST00000597901 PRKDCP78527 4128 aaKnown RBP11.83□□□□□ -0.52
LIG1-215ENST00000597901 TGP01266 2768 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms