RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 SLIRPQ9GZT3 109 aaKnown RBP8.25□□□□□ -1.09
LIG1-213ENST00000596672 PARP12Q9H0J9 701 aaKnown RBP8.25□□□□□ -1.09
LIG1-213ENST00000596672 CCDC59Q9P031 241 aaKnown RBP8.25□□□□□ -1.09
LIG1-213ENST00000596672 PEX16Q9Y5Y5 336 aa8.25□□□□□ -1.09
LIG1-213ENST00000596672 WI2-2373I1.2A0A1W2PRP0 233 aa8.24□□□□□ -1.09
LIG1-213ENST00000596672 SHISA3A0PJX4 238 aa8.24□□□□□ -1.09
LIG1-213ENST00000596672 AIPO00170 330 aa8.24□□□□□ -1.09
LIG1-213ENST00000596672 IGHG2P01859 326 aa8.24□□□□□ -1.09
LIG1-213ENST00000596672 CSTBP04080 98 aaKnown RBP8.24□□□□□ -1.09
LIG1-213ENST00000596672 FAM106CPP0CH98 169 aa8.24□□□□□ -1.09
LIG1-213ENST00000596672 VSIG8P0DPA2 414 aa8.24□□□□□ -1.09
LIG1-213ENST00000596672 TMEM11P17152 192 aa8.24□□□□□ -1.09
LIG1-213ENST00000596672 HTR2CP28335 458 aa8.24□□□□□ -1.09
LIG1-213ENST00000596672 SOX6P35712 828 aa8.24□□□□□ -1.09
LIG1-213ENST00000596672 MNDAP41218 407 aa8.24□□□□□ -1.09
LIG1-213ENST00000596672 RAB7AP51149 207 aa8.24□□□□□ -1.09
LIG1-213ENST00000596672 RORCP51449 518 aa8.24□□□□□ -1.09
LIG1-213ENST00000596672 ZNF137PP52743 207 aa8.24□□□□□ -1.09
LIG1-213ENST00000596672 PLA2G7Q13093 441 aa8.24□□□□□ -1.09
LIG1-213ENST00000596672 UNC119Q13432 240 aa8.24□□□□□ -1.09
LIG1-213ENST00000596672 HES1Q14469 280 aa8.24□□□□□ -1.09
LIG1-213ENST00000596672 ARSJQ5FYB0 599 aaPredicted RBP8.24□□□□□ -1.09
LIG1-213ENST00000596672 C1orf100Q5SVJ3 147 aa8.24□□□□□ -1.09
LIG1-213ENST00000596672 CCDC144NLQ6NUI1 221 aa8.24□□□□□ -1.09
LIG1-213ENST00000596672 Q6ZNX1 250 aa8.24□□□□□ -1.09
LIG1-213ENST00000596672 SLC25A48Q6ZT89 311 aaKnown RBP8.24□□□□□ -1.09
LIG1-213ENST00000596672 MOB3BQ86TA1 216 aa8.24□□□□□ -1.09
LIG1-213ENST00000596672 ZNF554Q86TJ5 538 aa8.24□□□□□ -1.09
LIG1-213ENST00000596672 MRPL41Q8IXM3 137 aaKnown RBP8.24□□□□□ -1.09
LIG1-213ENST00000596672 OR8H3Q8N146 312 aa8.24□□□□□ -1.09
LIG1-213ENST00000596672 C8orf31Q8N9H6 132 aa8.24□□□□□ -1.09
LIG1-213ENST00000596672 CREB3L1Q96BA8 519 aa8.24□□□□□ -1.09
LIG1-213ENST00000596672 DUX3Q96PT4 197 aa8.24□□□□□ -1.09
LIG1-213ENST00000596672 HSPB9Q9BQS6 159 aa8.24□□□□□ -1.09
LIG1-213ENST00000596672 NICN1Q9BSH3 213 aa8.24□□□□□ -1.09
LIG1-213ENST00000596672 MBNL3Q9NUK0 354 aaKnown RBP8.24□□□□□ -1.09
LIG1-213ENST00000596672 TSSC4Q9Y5U2 329 aaPredicted RBP8.24□□□□□ -1.09
LIG1-213ENST00000596672 PSMB11A5LHX3 300 aa8.23□□□□□ -1.09
LIG1-213ENST00000596672 FOXI3A8MTJ6 420 aaPredicted RBP8.23□□□□□ -1.09
LIG1-213ENST00000596672 FGF16O43320 207 aa8.23□□□□□ -1.09
LIG1-213ENST00000596672 PEX14O75381 377 aa8.23□□□□□ -1.09
LIG1-213ENST00000596672 ARL6IP5O75915 188 aa8.23□□□□□ -1.09
LIG1-213ENST00000596672 UCHL1P09936 223 aa8.23□□□□□ -1.09
LIG1-213ENST00000596672 MYL9P24844 172 aa8.23□□□□□ -1.09
LIG1-213ENST00000596672 CNTFRP26992 372 aa8.23□□□□□ -1.09
LIG1-213ENST00000596672 CHATP28329 748 aa8.23□□□□□ -1.09
LIG1-213ENST00000596672 HOXD3P31249 432 aaPredicted RBP8.23□□□□□ -1.09
LIG1-213ENST00000596672 PPP1CCP36873 323 aaKnown RBP8.23□□□□□ -1.09
LIG1-213ENST00000596672 GPR12P47775 334 aa8.23□□□□□ -1.09
LIG1-213ENST00000596672 RPL23AP62750 156 aaKnown RBP8.23□□□□□ -1.09
LIG1-213ENST00000596672 CFHR3Q02985 330 aa8.23□□□□□ -1.09
LIG1-213ENST00000596672 HSD17B12Q53GQ0 312 aa8.23□□□□□ -1.09
LIG1-213ENST00000596672 AWAT2Q6E213 333 aa8.23□□□□□ -1.09
LIG1-213ENST00000596672 C8orf86Q6ZUL3 223 aa8.23□□□□□ -1.09
LIG1-213ENST00000596672 OR2W3Q7Z3T1 314 aa8.23□□□□□ -1.09
LIG1-213ENST00000596672 LINC00596Q86U02 117 aa8.23□□□□□ -1.09
LIG1-213ENST00000596672 CDH26Q8IXH8 852 aa8.23□□□□□ -1.09
LIG1-213ENST00000596672 IZUMO1Q8IYV9 350 aa8.23□□□□□ -1.09
LIG1-213ENST00000596672 DTX3Q8N9I9 347 aa8.23□□□□□ -1.09
LIG1-213ENST00000596672 MINDY2Q8NBR6 621 aa8.23□□□□□ -1.09
LIG1-213ENST00000596672 OR10X1Q8NGY0 326 aa8.23□□□□□ -1.09
LIG1-213ENST00000596672 S100ZQ8WXG8 99 aa8.23□□□□□ -1.09
LIG1-213ENST00000596672 SLC25A46Q96AG3 418 aa8.23□□□□□ -1.09
LIG1-213ENST00000596672 CPNE2Q96FN4 548 aaPredicted RBP8.23□□□□□ -1.09
LIG1-213ENST00000596672 C6orf62Q9GZU0 229 aaPredicted RBP8.23□□□□□ -1.09
LIG1-213ENST00000596672 TAF9BQ9HBM6 251 aa8.23□□□□□ -1.09
LIG1-213ENST00000596672 NECAP2Q9NVZ3 263 aa8.23□□□□□ -1.09
LIG1-213ENST00000596672 AMMECR1Q9Y4X0 333 aaPredicted RBP8.23□□□□□ -1.09
LIG1-213ENST00000596672 M0QZK8 103 aa8.22□□□□□ -1.09
LIG1-213ENST00000596672 ZNF780AO75290 641 aaPredicted RBP8.22□□□□□ -1.09
LIG1-213ENST00000596672 CRTAPO75718 401 aaPredicted RBP8.22□□□□□ -1.09
LIG1-213ENST00000596672 GAPDHP04406 335 aaKnown RBP8.22□□□□□ -1.09
LIG1-213ENST00000596672 FUT3P21217 361 aa8.22□□□□□ -1.09
LIG1-213ENST00000596672 OR3A3P47888 321 aa8.22□□□□□ -1.09
LIG1-213ENST00000596672 OR10A3P58181 314 aa8.22□□□□□ -1.09
LIG1-213ENST00000596672 KIAA0141Q14154 515 aaPredicted RBP8.22□□□□□ -1.09
LIG1-213ENST00000596672 ZNF846Q147U1 533 aa8.22□□□□□ -1.09
LIG1-213ENST00000596672 MORN2Q502X0 79 aa8.22□□□□□ -1.09
LIG1-213ENST00000596672 C6orf201Q7Z4U5 140 aa8.22□□□□□ -1.09
LIG1-213ENST00000596672 STPG2Q8N412 459 aa8.22□□□□□ -1.09
LIG1-213ENST00000596672 PRR18Q8N4B5 295 aa8.22□□□□□ -1.09
LIG1-213ENST00000596672 FAM71E2Q8N5Q1 922 aa8.22□□□□□ -1.09
LIG1-213ENST00000596672 OR6Q1Q8NGQ2 317 aa8.22□□□□□ -1.09
LIG1-213ENST00000596672 NEK7Q8TDX7 302 aa8.22□□□□□ -1.09
LIG1-213ENST00000596672 MRPS24Q96EL2 167 aaKnown RBP8.22□□□□□ -1.09
LIG1-213ENST00000596672 RAX2Q96IS3 184 aa8.22□□□□□ -1.09
LIG1-213ENST00000596672 AKR1E2Q96JD6 320 aa8.22□□□□□ -1.09
LIG1-213ENST00000596672 S1PR3Q99500 378 aa8.22□□□□□ -1.09
LIG1-213ENST00000596672 P2RX4Q99571 388 aa8.22□□□□□ -1.09
LIG1-213ENST00000596672 ZNF251Q9BRH9 671 aa8.22□□□□□ -1.09
LIG1-213ENST00000596672 HDHD3Q9BSH5 251 aaPredicted RBP8.22□□□□□ -1.09
LIG1-213ENST00000596672 FAAP24Q9BTP7 215 aa8.22□□□□□ -1.09
LIG1-213ENST00000596672 WDR12Q9GZL7 423 aaKnown RBP8.22□□□□□ -1.09
LIG1-213ENST00000596672 NXF2Q9GZY0 626 aaKnown RBP8.22□□□□□ -1.09
LIG1-213ENST00000596672 TRAPPC2LQ9UL33 140 aa8.22□□□□□ -1.09
LIG1-213ENST00000596672 TRAV1-2A0A0B4J238 106 aa8.21□□□□□ -1.1
LIG1-213ENST00000596672 FAM90A10PA6NDY2 464 aa8.21□□□□□ -1.1
LIG1-213ENST00000596672 FAM90A7PA6NKC0 464 aa8.21□□□□□ -1.1
LIG1-213ENST00000596672 SERPINE3A8MV23 424 aa8.21□□□□□ -1.1
LIG1-213ENST00000596672 TMEM14DPA8MWL7 114 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms