RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 OR2T10Q8NGZ9 312 aa12.9□□□□□ -0.34
TRIM28-206ENST00000595974 SETD6Q8TBK2 473 aa12.9□□□□□ -0.34
TRIM28-206ENST00000595974 PECRQ9BY49 303 aa12.9□□□□□ -0.34
TRIM28-206ENST00000595974 IGHV3-72A0A0B4J1Y9 119 aa12.89□□□□□ -0.35
TRIM28-206ENST00000595974 PLA2G7Q13093 441 aa12.89□□□□□ -0.35
TRIM28-206ENST00000595974 C5orf24Q7Z6I8 188 aa12.89□□□□□ -0.35
TRIM28-206ENST00000595974 TPRA1Q86W33 373 aa12.89□□□□□ -0.35
TRIM28-206ENST00000595974 NR2C2APQ86WQ0 139 aa12.89□□□□□ -0.35
TRIM28-206ENST00000595974 OR2AK2Q8NG84 335 aa12.89□□□□□ -0.35
TRIM28-206ENST00000595974 IL1F10Q8WWZ1 152 aa12.89□□□□□ -0.35
TRIM28-206ENST00000595974 PTX4Q96A99 478 aa12.89□□□□□ -0.35
TRIM28-206ENST00000595974 EAF1Q96JC9 268 aaPredicted RBP12.89□□□□□ -0.35
TRIM28-206ENST00000595974 CMSS1Q9BQ75 279 aaKnown RBP12.89□□□□□ -0.35
TRIM28-206ENST00000595974 HDHD3Q9BSH5 251 aaPredicted RBP12.89□□□□□ -0.35
TRIM28-206ENST00000595974 SH2D7A6NKC9 451 aaPredicted RBP12.88□□□□□ -0.35
TRIM28-206ENST00000595974 NOTOA8MTQ0 251 aa12.88□□□□□ -0.35
TRIM28-206ENST00000595974 CD28P10747 220 aa12.88□□□□□ -0.35
TRIM28-206ENST00000595974 GADD45AP24522 165 aa12.88□□□□□ -0.35
TRIM28-206ENST00000595974 HNF4GQ14541 408 aa12.88□□□□□ -0.35
TRIM28-206ENST00000595974 NEDD8Q15843 81 aa12.88□□□□□ -0.35
TRIM28-206ENST00000595974 PLAC9Q5JTB6 97 aa12.88□□□□□ -0.35
TRIM28-206ENST00000595974 C9orf152Q5JTZ5 239 aa12.88□□□□□ -0.35
TRIM28-206ENST00000595974 NDUFA11Q86Y39 141 aa12.88□□□□□ -0.35
TRIM28-206ENST00000595974 Q8N6K4 173 aa12.88□□□□□ -0.35
TRIM28-206ENST00000595974 RAB3CQ96E17 227 aa12.88□□□□□ -0.35
TRIM28-206ENST00000595974 Q9N2K0 584 aa12.88□□□□□ -0.35
TRIM28-206ENST00000595974 PLXNB1O43157 2135 aa12.88□□□□□ -0.35
TRIM28-206ENST00000595974 METTL21EPA6NDL7 271 aa12.87□□□□□ -0.35
TRIM28-206ENST00000595974 MOSP00540 346 aa12.87□□□□□ -0.35
TRIM28-206ENST00000595974 MRPS15P82914 257 aaKnown RBP12.87□□□□□ -0.35
TRIM28-206ENST00000595974 LSAMPQ13449 338 aa12.87□□□□□ -0.35
TRIM28-206ENST00000595974 FAM71F2Q6NXP2 309 aa12.87□□□□□ -0.35
TRIM28-206ENST00000595974 ODF3L1Q8IXM7 274 aa12.87□□□□□ -0.35
TRIM28-206ENST00000595974 OR5AU1Q8NGC0 362 aa12.87□□□□□ -0.35
TRIM28-206ENST00000595974 OR8H1Q8NGG4 311 aa12.87□□□□□ -0.35
TRIM28-206ENST00000595974 OR10R2Q8NGX6 335 aa12.87□□□□□ -0.35
TRIM28-206ENST00000595974 KCTD7Q96MP8 289 aa12.87□□□□□ -0.35
TRIM28-206ENST00000595974 OR51E2Q9H255 320 aa12.87□□□□□ -0.35
TRIM28-206ENST00000595974 IFI27L2Q9H2X8 130 aa12.87□□□□□ -0.35
TRIM28-206ENST00000595974 NOTCH1P46531 2555 aa12.86□□□□□ -0.35
TRIM28-206ENST00000595974 A0A0B4J203 849 aa12.86□□□□□ -0.35
TRIM28-206ENST00000595974 SMIM30A4D0T7 59 aa12.86□□□□□ -0.35
TRIM28-206ENST00000595974 RAB27BO00194 218 aa12.86□□□□□ -0.35
TRIM28-206ENST00000595974 MFNGO00587 321 aa12.86□□□□□ -0.35
TRIM28-206ENST00000595974 ITGB1BP1O14713 200 aa12.86□□□□□ -0.35
TRIM28-206ENST00000595974 TNFAIP8O95379 198 aa12.86□□□□□ -0.35
TRIM28-206ENST00000595974 CD3GP09693 182 aa12.86□□□□□ -0.35
TRIM28-206ENST00000595974 SLC2A2P11168 524 aaPredicted RBP12.86□□□□□ -0.35
TRIM28-206ENST00000595974 MOGAT2Q3SYC2 334 aa12.86□□□□□ -0.35
TRIM28-206ENST00000595974 HIST2H2BDQ6DRA6 164 aa12.86□□□□□ -0.35
TRIM28-206ENST00000595974 ZNF833PQ6ZTB9 187 aa12.86□□□□□ -0.35
TRIM28-206ENST00000595974 CENPVQ7Z7K6 275 aaPredicted RBP12.86□□□□□ -0.35
TRIM28-206ENST00000595974 FAM110DQ8TAY7 271 aaPredicted RBP12.86□□□□□ -0.35
TRIM28-206ENST00000595974 EDARADDQ8WWZ3 215 aa12.86□□□□□ -0.35
TRIM28-206ENST00000595974 CITED2Q99967 270 aaPredicted RBP12.86□□□□□ -0.35
TRIM28-206ENST00000595974 CHCHD6Q9BRQ6 235 aa12.86□□□□□ -0.35
TRIM28-206ENST00000595974 LIN7CQ9NUP9 197 aaKnown RBP12.86□□□□□ -0.35
TRIM28-206ENST00000595974 PIPOXQ9P0Z9 390 aa12.86□□□□□ -0.35
TRIM28-206ENST00000595974 SLC23A1Q9UHI7 598 aa12.86□□□□□ -0.35
TRIM28-206ENST00000595974 KCNK7Q9Y2U2 307 aa12.86□□□□□ -0.35
TRIM28-206ENST00000595974 SAA2-SAA4A0A096LPE2 208 aa12.85□□□□□ -0.35
TRIM28-206ENST00000595974 NCBP2LA6PVI3 153 aaKnown RBP12.85□□□□□ -0.35
TRIM28-206ENST00000595974 SERPINE3A8MV23 424 aa12.85□□□□□ -0.35
TRIM28-206ENST00000595974 HSPA12AO43301 675 aa12.85□□□□□ -0.35
TRIM28-206ENST00000595974 IGHG2P01859 326 aa12.85□□□□□ -0.35
TRIM28-206ENST00000595974 OPN1MWP04001 364 aa12.85□□□□□ -0.35
TRIM28-206ENST00000595974 SAA2P0DJI9 122 aaPredicted RBP12.85□□□□□ -0.35
TRIM28-206ENST00000595974 OPN1MW2P0DN77 364 aa12.85□□□□□ -0.35
TRIM28-206ENST00000595974 OPN1MW3P0DN78 364 aa12.85□□□□□ -0.35
TRIM28-206ENST00000595974 HIST1H1DP16402 221 aaKnown RBP12.85□□□□□ -0.35
TRIM28-206ENST00000595974 CD36P16671 472 aa12.85□□□□□ -0.35
TRIM28-206ENST00000595974 ZBTB25P24278 435 aa12.85□□□□□ -0.35
TRIM28-206ENST00000595974 ARL6IP1Q15041 203 aa12.85□□□□□ -0.35
TRIM28-206ENST00000595974 SFXN4Q6P4A7 337 aa12.85□□□□□ -0.35
TRIM28-206ENST00000595974 Q8N9W7 124 aa12.85□□□□□ -0.35
TRIM28-206ENST00000595974 OR4X2Q8NGF9 303 aa12.85□□□□□ -0.35
TRIM28-206ENST00000595974 MRPL20Q9BYC9 149 aaKnown RBP12.85□□□□□ -0.35
TRIM28-206ENST00000595974 GHITMQ9H3K2 345 aa12.85□□□□□ -0.35
TRIM28-206ENST00000595974 VCX3AQ9NNX9 186 aa12.85□□□□□ -0.35
TRIM28-206ENST00000595974 A0A087WXM4 84 aa12.84□□□□□ -0.35
TRIM28-206ENST00000595974 LOC100506127A0A0U1RQW1 187 aa12.84□□□□□ -0.35
TRIM28-206ENST00000595974 ZNF736B4DX44 427 aaPredicted RBP12.84□□□□□ -0.35
TRIM28-206ENST00000595974 TRDCB7Z8K6 153 aa12.84□□□□□ -0.35
TRIM28-206ENST00000595974 RAB29O14966 203 aa12.84□□□□□ -0.35
TRIM28-206ENST00000595974 ST8SIA5O15466 376 aa12.84□□□□□ -0.35
TRIM28-206ENST00000595974 FCGR3AP08637 254 aa12.84□□□□□ -0.35
TRIM28-206ENST00000595974 SCTP09683 121 aa12.84□□□□□ -0.35
TRIM28-206ENST00000595974 SDC2P34741 201 aa12.84□□□□□ -0.35
TRIM28-206ENST00000595974 CD83Q01151 205 aa12.84□□□□□ -0.35
TRIM28-206ENST00000595974 KIR2DS1Q14954 304 aa12.84□□□□□ -0.35
TRIM28-206ENST00000595974 NSUN5P1Q3KNT7 163 aa12.84□□□□□ -0.35
TRIM28-206ENST00000595974 TIMM50Q3ZCQ8 353 aa12.84□□□□□ -0.35
TRIM28-206ENST00000595974 SLC35E3Q7Z769 313 aa12.84□□□□□ -0.35
TRIM28-206ENST00000595974 OR4F17Q8NGA8 305 aa12.84□□□□□ -0.35
TRIM28-206ENST00000595974 OR4A4PQ8NGN8 299 aa12.84□□□□□ -0.35
TRIM28-206ENST00000595974 CHPT1Q8WUD6 406 aa12.84□□□□□ -0.35
TRIM28-206ENST00000595974 OR4F4Q96R69 305 aa12.84□□□□□ -0.35
TRIM28-206ENST00000595974 S1PR3Q99500 378 aa12.84□□□□□ -0.35
TRIM28-206ENST00000595974 NABP2Q9BQ15 211 aa12.84□□□□□ -0.35
TRIM28-206ENST00000595974 ATG5Q9H1Y0 275 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms