RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 SSX1Q16384 188 aa12.09□□□□□ -0.47
TRIM28-203ENST00000593582 C10orf99Q6UWK7 81 aa12.09□□□□□ -0.47
TRIM28-203ENST00000593582 MOB1BQ7L9L4 216 aa12.09□□□□□ -0.47
TRIM28-203ENST00000593582 C5orf24Q7Z6I8 188 aa12.09□□□□□ -0.47
TRIM28-203ENST00000593582 ZNF329Q86UD4 541 aa12.09□□□□□ -0.47
TRIM28-203ENST00000593582 SVOPQ8N4V2 548 aa12.09□□□□□ -0.47
TRIM28-203ENST00000593582 OR51D1Q8NGF3 324 aa12.09□□□□□ -0.47
TRIM28-203ENST00000593582 SETD6Q8TBK2 473 aa12.09□□□□□ -0.47
TRIM28-203ENST00000593582 FAM3DQ96BQ1 224 aa12.09□□□□□ -0.47
TRIM28-203ENST00000593582 LIN7CQ9NUP9 197 aaKnown RBP12.09□□□□□ -0.47
TRIM28-203ENST00000593582 NDUFB11Q9NX14 153 aa12.09□□□□□ -0.47
TRIM28-203ENST00000593582 HSF4Q9ULV5 492 aa12.09□□□□□ -0.47
TRIM28-203ENST00000593582 PDCD5O14737 125 aa12.08□□□□□ -0.48
TRIM28-203ENST00000593582 SLC35B1P78383 322 aa12.08□□□□□ -0.48
TRIM28-203ENST00000593582 C2orf76Q3KRA6 126 aa12.08□□□□□ -0.48
TRIM28-203ENST00000593582 LY6G6FQ5SQ64 297 aa12.08□□□□□ -0.48
TRIM28-203ENST00000593582 SAMD5Q5TGI4 173 aa12.08□□□□□ -0.48
TRIM28-203ENST00000593582 ZNF880Q6PDB4 577 aa12.08□□□□□ -0.48
TRIM28-203ENST00000593582 NOL4LQ96MY1 436 aaPredicted RBP12.08□□□□□ -0.48
TRIM28-203ENST00000593582 S1PR3Q99500 378 aa12.08□□□□□ -0.48
TRIM28-203ENST00000593582 RASL11BQ9BPW5 248 aa12.08□□□□□ -0.48
TRIM28-203ENST00000593582 ABCG5Q9H222 651 aa12.08□□□□□ -0.48
TRIM28-203ENST00000593582 AK3Q9UIJ7 227 aa12.08□□□□□ -0.48
TRIM28-203ENST00000593582 MGAT4AQ9UM21 535 aa12.08□□□□□ -0.48
TRIM28-203ENST00000593582 TRBV6-6A0A0A6YYG2 114 aa12.07□□□□□ -0.48
TRIM28-203ENST00000593582 TRAV1-2A0A0B4J238 106 aa12.07□□□□□ -0.48
TRIM28-203ENST00000593582 AP4M1O00189 453 aa12.07□□□□□ -0.48
TRIM28-203ENST00000593582 DENRO43583 198 aaKnown RBP12.07□□□□□ -0.48
TRIM28-203ENST00000593582 PF4P02776 101 aa12.07□□□□□ -0.48
TRIM28-203ENST00000593582 MYL9P24844 172 aa12.07□□□□□ -0.48
TRIM28-203ENST00000593582 VEGFCP49767 419 aa12.07□□□□□ -0.48
TRIM28-203ENST00000593582 LSAMPQ13449 338 aa12.07□□□□□ -0.48
TRIM28-203ENST00000593582 BEAN1Q3B7T3 259 aa12.07□□□□□ -0.48
TRIM28-203ENST00000593582 HES5Q5TA89 166 aa12.07□□□□□ -0.48
TRIM28-203ENST00000593582 CD200R1LQ6Q8B3 271 aa12.07□□□□□ -0.48
TRIM28-203ENST00000593582 Q8N9W7 124 aa12.07□□□□□ -0.48
TRIM28-203ENST00000593582 OR56B1Q8NGI3 324 aa12.07□□□□□ -0.48
TRIM28-203ENST00000593582 ARHGAP5-AS1Q96IT6 56 aa12.07□□□□□ -0.48
TRIM28-203ENST00000593582 C12orf4Q9NQ89 552 aa12.07□□□□□ -0.48
TRIM28-203ENST00000593582 PLSCR3Q9NRY6 295 aa12.07□□□□□ -0.48
TRIM28-203ENST00000593582 TRDV1A0A1B0GX56 115 aa12.06□□□□□ -0.48
TRIM28-203ENST00000593582 FOXI3A8MTJ6 420 aaPredicted RBP12.06□□□□□ -0.48
TRIM28-203ENST00000593582 CD33P20138 364 aa12.06□□□□□ -0.48
TRIM28-203ENST00000593582 GALP22466 123 aa12.06□□□□□ -0.48
TRIM28-203ENST00000593582 GPR12P47775 334 aa12.06□□□□□ -0.48
TRIM28-203ENST00000593582 OXLD1Q5BKU9 147 aa12.06□□□□□ -0.48
TRIM28-203ENST00000593582 KPRPQ5T749 579 aaPredicted RBP12.06□□□□□ -0.48
TRIM28-203ENST00000593582 Q6ZPA2 131 aa12.06□□□□□ -0.48
TRIM28-203ENST00000593582 ZNF833PQ6ZTB9 187 aa12.06□□□□□ -0.48
TRIM28-203ENST00000593582 ODF3L1Q8IXM7 274 aa12.06□□□□□ -0.48
TRIM28-203ENST00000593582 STPG2Q8N412 459 aa12.06□□□□□ -0.48
TRIM28-203ENST00000593582 COMMD1Q8N668 190 aa12.06□□□□□ -0.48
TRIM28-203ENST00000593582 HDHD3Q9BSH5 251 aaPredicted RBP12.06□□□□□ -0.48
TRIM28-203ENST00000593582 GON7Q9BXV9 100 aa12.06□□□□□ -0.48
TRIM28-203ENST00000593582 PECRQ9BY49 303 aa12.06□□□□□ -0.48
TRIM28-203ENST00000593582 LINC00527Q9UJ94 153 aa12.06□□□□□ -0.48
TRIM28-203ENST00000593582 RAB22AQ9UL26 194 aa12.06□□□□□ -0.48
TRIM28-203ENST00000593582 SAA2-SAA4A0A096LPE2 208 aa12.05□□□□□ -0.48
TRIM28-203ENST00000593582 TMEM272A0A1B0GTI8 110 aa12.05□□□□□ -0.48
TRIM28-203ENST00000593582 LINC01548A6NM66 108 aa12.05□□□□□ -0.48
TRIM28-203ENST00000593582 IFITM5A6NNB3 132 aa12.05□□□□□ -0.48
TRIM28-203ENST00000593582 LDLRAD4O15165 306 aa12.05□□□□□ -0.48
TRIM28-203ENST00000593582 SAA2P0DJI9 122 aaPredicted RBP12.05□□□□□ -0.48
TRIM28-203ENST00000593582 ZBTB25P24278 435 aa12.05□□□□□ -0.48
TRIM28-203ENST00000593582 SOX6P35712 828 aa12.05□□□□□ -0.48
TRIM28-203ENST00000593582 OR3A3P47888 321 aa12.05□□□□□ -0.48
TRIM28-203ENST00000593582 F2RL1P55085 397 aa12.05□□□□□ -0.48
TRIM28-203ENST00000593582 TMEM50BP56557 158 aa12.05□□□□□ -0.48
TRIM28-203ENST00000593582 OR10A3P58181 314 aa12.05□□□□□ -0.48
TRIM28-203ENST00000593582 MMDQ15546 238 aa12.05□□□□□ -0.48
TRIM28-203ENST00000593582 UBE2UQ5VVX9 321 aa12.05□□□□□ -0.48
TRIM28-203ENST00000593582 SPARTQ8N0X7 666 aa12.05□□□□□ -0.48
TRIM28-203ENST00000593582 FAM71E2Q8N5Q1 922 aa12.05□□□□□ -0.48
TRIM28-203ENST00000593582 WFDC9Q8NEX5 89 aa12.05□□□□□ -0.48
TRIM28-203ENST00000593582 FCGR1BQ92637 280 aa12.05□□□□□ -0.48
TRIM28-203ENST00000593582 CMSS1Q9BQ75 279 aaKnown RBP12.05□□□□□ -0.48
TRIM28-203ENST00000593582 MRPL20Q9BYC9 149 aaKnown RBP12.05□□□□□ -0.48
TRIM28-203ENST00000593582 YTHDF1Q9BYJ9 559 aaKnown RBP12.05□□□□□ -0.48
TRIM28-203ENST00000593582 IFI27L2Q9H2X8 130 aa12.05□□□□□ -0.48
TRIM28-203ENST00000593582 PIPOXQ9P0Z9 390 aa12.05□□□□□ -0.48
TRIM28-203ENST00000593582 SLC23A1Q9UHI7 598 aa12.05□□□□□ -0.48
TRIM28-203ENST00000593582 PRKDCP78527 4128 aaKnown RBP12.05□□□□□ -0.48
TRIM28-203ENST00000593582 RAB29O14966 203 aa12.04□□□□□ -0.48
TRIM28-203ENST00000593582 ST8SIA5O15466 376 aa12.04□□□□□ -0.48
TRIM28-203ENST00000593582 HSPA12AO43301 675 aa12.04□□□□□ -0.48
TRIM28-203ENST00000593582 RRP9O43818 475 aaKnown RBP12.04□□□□□ -0.48
TRIM28-203ENST00000593582 RAB3BP20337 219 aa12.04□□□□□ -0.48
TRIM28-203ENST00000593582 PSMB9P28065 219 aa12.04□□□□□ -0.48
TRIM28-203ENST00000593582 HLA-DRB3P79483 266 aa12.04□□□□□ -0.48
TRIM28-203ENST00000593582 MRPS15P82914 257 aaKnown RBP12.04□□□□□ -0.48
TRIM28-203ENST00000593582 PLAC9Q5JTB6 97 aa12.04□□□□□ -0.48
TRIM28-203ENST00000593582 C22orf42Q6IC83 251 aa12.04□□□□□ -0.48
TRIM28-203ENST00000593582 FAM71F2Q6NXP2 309 aa12.04□□□□□ -0.48
TRIM28-203ENST00000593582 TEX38Q6PEX7 206 aa12.04□□□□□ -0.48
TRIM28-203ENST00000593582 EDARADDQ8WWZ3 215 aa12.04□□□□□ -0.48
TRIM28-203ENST00000593582 NABP2Q9BQ15 211 aa12.04□□□□□ -0.48
TRIM28-203ENST00000593582 GHITMQ9H3K2 345 aa12.04□□□□□ -0.48
TRIM28-203ENST00000593582 Q9N2K0 584 aa12.04□□□□□ -0.48
TRIM28-203ENST00000593582 ZFP57Q9NU63 452 aa12.04□□□□□ -0.48
TRIM28-203ENST00000593582 TGP01266 2768 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms