RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 MYF6P23409 242 aa9.08□□□□□ -0.96
CLIP3-204ENST00000590559 NDPQ00604 133 aa9.08□□□□□ -0.96
CLIP3-204ENST00000590559 DOC2BQ14184 412 aa9.08□□□□□ -0.96
CLIP3-204ENST00000590559 C5orf64Q2M2E5 130 aa9.08□□□□□ -0.96
CLIP3-204ENST00000590559 PRR18Q8N4B5 295 aa9.08□□□□□ -0.96
CLIP3-204ENST00000590559 OR52L2PQ8NGH6 319 aa9.08□□□□□ -0.96
CLIP3-204ENST00000590559 DCUN1D4Q92564 292 aa9.08□□□□□ -0.96
CLIP3-204ENST00000590559 YPEL2Q96QA6 119 aa9.08□□□□□ -0.96
CLIP3-204ENST00000590559 OR14A2Q96R54 314 aa9.08□□□□□ -0.96
CLIP3-204ENST00000590559 ZNF251Q9BRH9 671 aa9.08□□□□□ -0.96
CLIP3-204ENST00000590559 ABHD14AQ9BUJ0 271 aa9.08□□□□□ -0.96
CLIP3-204ENST00000590559 MRPL20Q9BYC9 149 aaKnown RBP9.08□□□□□ -0.96
CLIP3-204ENST00000590559 JPT1Q9UK76 154 aa9.08□□□□□ -0.96
CLIP3-204ENST00000590559 EXOSC1Q9Y3B2 195 aaKnown RBP9.08□□□□□ -0.96
CLIP3-204ENST00000590559 FBXO7Q9Y3I1 522 aa9.08□□□□□ -0.96
CLIP3-204ENST00000590559 PEX16Q9Y5Y5 336 aa9.08□□□□□ -0.96
CLIP3-204ENST00000590559 WSB1Q9Y6I7 421 aa9.08□□□□□ -0.96
CLIP3-204ENST00000590559 TRAV41A0A0B4J266 112 aa9.07□□□□□ -0.96
CLIP3-204ENST00000590559 NBR2O15453 112 aa9.07□□□□□ -0.96
CLIP3-204ENST00000590559 EGR2P11161 476 aaPredicted RBP9.07□□□□□ -0.96
CLIP3-204ENST00000590559 BLVRBP30043 206 aaPredicted RBP9.07□□□□□ -0.96
CLIP3-204ENST00000590559 PPP1CCP36873 323 aaKnown RBP9.07□□□□□ -0.96
CLIP3-204ENST00000590559 TMEM65Q6PI78 240 aa9.07□□□□□ -0.96
CLIP3-204ENST00000590559 PQLC1Q8N2U9 271 aa9.07□□□□□ -0.96
CLIP3-204ENST00000590559 MUC7Q8TAX7 377 aa9.07□□□□□ -0.96
CLIP3-204ENST00000590559 DLX4Q92988 240 aaPredicted RBP9.07□□□□□ -0.96
CLIP3-204ENST00000590559 DERL3Q96Q80 235 aa9.07□□□□□ -0.96
CLIP3-204ENST00000590559 SELENOIQ9C0D9 397 aa9.07□□□□□ -0.96
CLIP3-204ENST00000590559 TOLLIPQ9H0E2 274 aa9.07□□□□□ -0.96
CLIP3-204ENST00000590559 BANF2Q9H503 90 aa9.07□□□□□ -0.96
CLIP3-204ENST00000590559 S100A14Q9HCY8 104 aa9.07□□□□□ -0.96
CLIP3-204ENST00000590559 CKLFQ9UBR5 152 aa9.07□□□□□ -0.96
CLIP3-204ENST00000590559 NUBP2Q9Y5Y2 271 aa9.07□□□□□ -0.96
CLIP3-204ENST00000590559 SAA2-SAA4A0A096LPE2 208 aa9.06□□□□□ -0.96
CLIP3-204ENST00000590559 IRGMA1A4Y4 181 aa9.06□□□□□ -0.96
CLIP3-204ENST00000590559 UBE2QL1A1L167 161 aa9.06□□□□□ -0.96
CLIP3-204ENST00000590559 OVOL1O14753 267 aa9.06□□□□□ -0.96
CLIP3-204ENST00000590559 PDCD6O75340 191 aa9.06□□□□□ -0.96
CLIP3-204ENST00000590559 CD1AP06126 327 aa9.06□□□□□ -0.96
CLIP3-204ENST00000590559 SAA2P0DJI9 122 aaPredicted RBP9.06□□□□□ -0.96
CLIP3-204ENST00000590559 OR3A3P47888 321 aa9.06□□□□□ -0.96
CLIP3-204ENST00000590559 HMGN3Q15651 99 aa9.06□□□□□ -0.96
CLIP3-204ENST00000590559 AWAT2Q6E213 333 aa9.06□□□□□ -0.96
CLIP3-204ENST00000590559 LIN54Q6MZP7 749 aa9.06□□□□□ -0.96
CLIP3-204ENST00000590559 FAM71F2Q6NXP2 309 aa9.06□□□□□ -0.96
CLIP3-204ENST00000590559 ACSM6Q6P461 480 aa9.06□□□□□ -0.96
CLIP3-204ENST00000590559 JAGN1Q8N5M9 183 aa9.06□□□□□ -0.96
CLIP3-204ENST00000590559 ZFP41Q8N8Y5 198 aa9.06□□□□□ -0.96
CLIP3-204ENST00000590559 TMEM80Q96HE8 168 aa9.06□□□□□ -0.96
CLIP3-204ENST00000590559 RCHY1Q96PM5 261 aa9.06□□□□□ -0.96
CLIP3-204ENST00000590559 ALX4Q9H161 411 aaPredicted RBP9.06□□□□□ -0.96
CLIP3-204ENST00000590559 IFI27L2Q9H2X8 130 aa9.06□□□□□ -0.96
CLIP3-204ENST00000590559 ISYNA1Q9NPH2 558 aa9.06□□□□□ -0.96
CLIP3-204ENST00000590559 PARP11Q9NR21 331 aa9.06□□□□□ -0.96
CLIP3-204ENST00000590559 CHCHD3Q9NX63 227 aaKnown RBP9.06□□□□□ -0.96
CLIP3-204ENST00000590559 SMPD3Q9NY59 655 aaPredicted RBP9.06□□□□□ -0.96
CLIP3-204ENST00000590559 A0A1W2PPK0 400 aa9.05□□□□□ -0.96
CLIP3-204ENST00000590559 MAS1P04201 325 aa9.05□□□□□ -0.96
CLIP3-204ENST00000590559 FRMD6-AS1P0C7T7 363 aa9.05□□□□□ -0.96
CLIP3-204ENST00000590559 CD37P11049 281 aa9.05□□□□□ -0.96
CLIP3-204ENST00000590559 SPNP16150 400 aa9.05□□□□□ -0.96
CLIP3-204ENST00000590559 MYL12AP19105 171 aa9.05□□□□□ -0.96
CLIP3-204ENST00000590559 CAPGP40121 348 aa9.05□□□□□ -0.96
CLIP3-204ENST00000590559 SLURP1P55000 103 aa9.05□□□□□ -0.96
CLIP3-204ENST00000590559 LRRC36Q1X8D7 754 aa9.05□□□□□ -0.96
CLIP3-204ENST00000590559 FAM27D1Q5T7N8 215 aa9.05□□□□□ -0.96
CLIP3-204ENST00000590559 ZNF660Q6AZW8 331 aaPredicted RBP9.05□□□□□ -0.96
CLIP3-204ENST00000590559 ZNF880Q6PDB4 577 aa9.05□□□□□ -0.96
CLIP3-204ENST00000590559 CD200R1LQ6Q8B3 271 aa9.05□□□□□ -0.96
CLIP3-204ENST00000590559 C10orf67Q8IYJ2 551 aa9.05□□□□□ -0.96
CLIP3-204ENST00000590559 GGHQ92820 318 aa9.05□□□□□ -0.96
CLIP3-204ENST00000590559 OR5B12Q96R08 314 aa9.05□□□□□ -0.96
CLIP3-204ENST00000590559 SULT4A1Q9BR01 284 aa9.05□□□□□ -0.96
CLIP3-204ENST00000590559 UQCC2Q9BRT2 126 aa9.05□□□□□ -0.96
CLIP3-204ENST00000590559 LRRC42Q9Y546 428 aa9.05□□□□□ -0.96
CLIP3-204ENST00000590559 IGHV4OR15-8A0A075B7B6 117 aa9.04□□□□□ -0.96
CLIP3-204ENST00000590559 A0A087WW49 117 aa9.04□□□□□ -0.96
CLIP3-204ENST00000590559 LINC01619G3V211 115 aa9.04□□□□□ -0.96
CLIP3-204ENST00000590559 FCN1O00602 326 aa9.04□□□□□ -0.96
CLIP3-204ENST00000590559 CRTAPO75718 401 aaPredicted RBP9.04□□□□□ -0.96
CLIP3-204ENST00000590559 LY86O95711 162 aa9.04□□□□□ -0.96
CLIP3-204ENST00000590559 NAPSAO96009 420 aa9.04□□□□□ -0.96
CLIP3-204ENST00000590559 LGALS1P09382 135 aaKnown RBP9.04□□□□□ -0.96
CLIP3-204ENST00000590559 CT45A6P0DMU7 189 aa9.04□□□□□ -0.96
CLIP3-204ENST00000590559 CT45A5P0DMU8 189 aa9.04□□□□□ -0.96
CLIP3-204ENST00000590559 CT45A7P0DMV0 189 aa9.04□□□□□ -0.96
CLIP3-204ENST00000590559 GP9P14770 177 aa9.04□□□□□ -0.96
CLIP3-204ENST00000590559 CX3CL1P78423 397 aa9.04□□□□□ -0.96
CLIP3-204ENST00000590559 LAIR2Q6ISS4 152 aa9.04□□□□□ -0.96
CLIP3-204ENST00000590559 TCTEX1D1Q8N7M0 179 aa9.04□□□□□ -0.96
CLIP3-204ENST00000590559 NKAIN3Q8N8D7 197 aa9.04□□□□□ -0.96
CLIP3-204ENST00000590559 ZNF555Q8NEP9 628 aa9.04□□□□□ -0.96
CLIP3-204ENST00000590559 GALMQ96C23 342 aa9.04□□□□□ -0.96
CLIP3-204ENST00000590559 TM2D3Q9BRN9 247 aa9.04□□□□□ -0.96
CLIP3-204ENST00000590559 AGMATQ9BSE5 352 aa9.04□□□□□ -0.96
CLIP3-204ENST00000590559 CST11Q9H112 138 aa9.04□□□□□ -0.96
CLIP3-204ENST00000590559 KCNIP1Q9NZI2 227 aa9.04□□□□□ -0.96
CLIP3-204ENST00000590559 GHRLQ9UBU3 117 aa9.04□□□□□ -0.96
CLIP3-204ENST00000590559 TRIM64CA6NLI5 447 aa9.03□□□□□ -0.96
CLIP3-204ENST00000590559 A8MZ25 164 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms