RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-222	ENST00000582792	DEFB136	Q30KP8	78 aa		10.64	□□□□□ -0.71
SS18-222	ENST00000582792	CASC10	Q5T4H9	136 aa		10.64	□□□□□ -0.71
SS18-222	ENST00000582792	CROCCP3	Q8IVE0	287 aa		10.64	□□□□□ -0.71
SS18-222	ENST00000582792	ZNF565	Q8N9K5	539 aa		10.64	□□□□□ -0.71
SS18-222	ENST00000582792	OR13A1	Q8NGR1	328 aa		10.64	□□□□□ -0.71
SS18-222	ENST00000582792	PTX4	Q96A99	478 aa		10.64	□□□□□ -0.71
SS18-222	ENST00000582792	FAM3D	Q96BQ1	224 aa		10.64	□□□□□ -0.71
SS18-222	ENST00000582792	BCL7B	Q9BQE9	202 aa		10.64	□□□□□ -0.71
SS18-222	ENST00000582792	TM2D1	Q9BX74	207 aa		10.64	□□□□□ -0.71
SS18-222	ENST00000582792	IDI2-AS1	Q9NZ38	188 aa		10.64	□□□□□ -0.71
SS18-222	ENST00000582792	RCC2	Q9P258	522 aa	Known RBP	10.64	□□□□□ -0.71
SS18-222	ENST00000582792	EPPK1	P58107	5090 aa	Known RBP	10.64	□□□□□ -0.71
SS18-222	ENST00000582792		A0A1W2PP11	408 aa		10.63	□□□□□ -0.71
SS18-222	ENST00000582792	SEC14L6	B5MCN3	397 aa		10.63	□□□□□ -0.71
SS18-222	ENST00000582792	LDLRAD4	O15165	306 aa		10.63	□□□□□ -0.71
SS18-222	ENST00000582792	CRTAP	O75718	401 aa	Predicted RBP	10.63	□□□□□ -0.71
SS18-222	ENST00000582792	GABARAP	O95166	117 aa		10.63	□□□□□ -0.71
SS18-222	ENST00000582792	IL1A	P01583	271 aa		10.63	□□□□□ -0.71
SS18-222	ENST00000582792	GPR12	P47775	334 aa		10.63	□□□□□ -0.71
SS18-222	ENST00000582792	CDX1	P47902	265 aa	Predicted RBP	10.63	□□□□□ -0.71
SS18-222	ENST00000582792	SCAND1	P57086	179 aa		10.63	□□□□□ -0.71
SS18-222	ENST00000582792	OR10A3	P58181	314 aa		10.63	□□□□□ -0.71
SS18-222	ENST00000582792	RPS27A	P62979	156 aa	Known RBP	10.63	□□□□□ -0.71
SS18-222	ENST00000582792	PIGY	Q3MUY2	71 aa		10.63	□□□□□ -0.71
SS18-222	ENST00000582792	CXorf66	Q5JRM2	361 aa	Predicted RBP	10.63	□□□□□ -0.71
SS18-222	ENST00000582792	SLC16A12	Q6ZSM3	486 aa		10.63	□□□□□ -0.71
SS18-222	ENST00000582792	LCNL1	Q6ZST4	164 aa		10.63	□□□□□ -0.71
SS18-222	ENST00000582792	NR2C2AP	Q86WQ0	139 aa		10.63	□□□□□ -0.71
SS18-222	ENST00000582792	RNF152	Q8N8N0	203 aa		10.63	□□□□□ -0.71
SS18-222	ENST00000582792	TMEM104	Q8NE00	496 aa		10.63	□□□□□ -0.71
SS18-222	ENST00000582792	MUC7	Q8TAX7	377 aa		10.63	□□□□□ -0.71
SS18-222	ENST00000582792	URM1	Q9BTM9	101 aa	Known RBP	10.63	□□□□□ -0.71
SS18-222	ENST00000582792	TMEM59	Q9BXS4	323 aa		10.63	□□□□□ -0.71
SS18-222	ENST00000582792	GON7	Q9BXV9	100 aa		10.63	□□□□□ -0.71
SS18-222	ENST00000582792	ABCG5	Q9H222	651 aa		10.63	□□□□□ -0.71
SS18-222	ENST00000582792	KIF25	Q9UIL4	384 aa		10.63	□□□□□ -0.71
SS18-222	ENST00000582792	RAB22A	Q9UL26	194 aa		10.63	□□□□□ -0.71
SS18-222	ENST00000582792	MEIKIN	A0A087WXM9	373 aa		10.62	□□□□□ -0.71
SS18-222	ENST00000582792	TRAV24	A0A0B4J272	114 aa		10.62	□□□□□ -0.71
SS18-222	ENST00000582792	NPIPB11	E5RHQ5	1161 aa		10.62	□□□□□ -0.71
SS18-222	ENST00000582792	HSPB6	O14558	160 aa		10.62	□□□□□ -0.71
SS18-222	ENST00000582792	GEMIN2	O14893	280 aa	Known RBP	10.62	□□□□□ -0.71
SS18-222	ENST00000582792	OR7C1	O76099	320 aa	Predicted RBP	10.62	□□□□□ -0.71
SS18-222	ENST00000582792	RAB6A	P20340	208 aa		10.62	□□□□□ -0.71
SS18-222	ENST00000582792	GNG10	P50151	68 aa		10.62	□□□□□ -0.71
SS18-222	ENST00000582792	ZNF816	Q0VGE8	651 aa	Predicted RBP	10.62	□□□□□ -0.71
SS18-222	ENST00000582792	UNC119	Q13432	240 aa		10.62	□□□□□ -0.71
SS18-222	ENST00000582792	FOXE3	Q13461	319 aa		10.62	□□□□□ -0.71
SS18-222	ENST00000582792	P2RY14	Q15391	338 aa		10.62	□□□□□ -0.71
SS18-222	ENST00000582792	C2orf76	Q3KRA6	126 aa		10.62	□□□□□ -0.71
SS18-222	ENST00000582792	SFXN4	Q6P4A7	337 aa		10.62	□□□□□ -0.71
SS18-222	ENST00000582792	TGIF2LX	Q8IUE1	241 aa		10.62	□□□□□ -0.71
SS18-222	ENST00000582792	FAM89B	Q8N5H3	189 aa		10.62	□□□□□ -0.71
SS18-222	ENST00000582792	OR10A7	Q8NGE5	316 aa		10.62	□□□□□ -0.71
SS18-222	ENST00000582792	OR10X1	Q8NGY0	326 aa		10.62	□□□□□ -0.71
SS18-222	ENST00000582792	SELENOI	Q9C0D9	397 aa		10.62	□□□□□ -0.71
SS18-222	ENST00000582792	RNF167	Q9H6Y7	350 aa		10.62	□□□□□ -0.71
SS18-222	ENST00000582792	LIN7C	Q9NUP9	197 aa	Known RBP	10.62	□□□□□ -0.71
SS18-222	ENST00000582792	ZNF256	Q9Y2P7	627 aa	Predicted RBP	10.62	□□□□□ -0.71
SS18-222	ENST00000582792	IGHV1-3	A0A0C4DH29	117 aa		10.61	□□□□□ -0.71
SS18-222	ENST00000582792	NCBP2L	A6PVI3	153 aa	Known RBP	10.61	□□□□□ -0.71
SS18-222	ENST00000582792	HSD17B6	O14756	317 aa		10.61	□□□□□ -0.71
SS18-222	ENST00000582792	CA11	O75493	328 aa		10.61	□□□□□ -0.71
SS18-222	ENST00000582792	ELANE	P08246	267 aa		10.61	□□□□□ -0.71
SS18-222	ENST00000582792	FUT3	P21217	361 aa		10.61	□□□□□ -0.71
SS18-222	ENST00000582792	FHL3	Q13643	280 aa		10.61	□□□□□ -0.71
SS18-222	ENST00000582792	CTF1	Q16619	201 aa		10.61	□□□□□ -0.71
SS18-222	ENST00000582792	LTC4S	Q16873	150 aa		10.61	□□□□□ -0.71
SS18-222	ENST00000582792	PAN3	Q58A45	887 aa	Known RBP	10.61	□□□□□ -0.71
SS18-222	ENST00000582792	HES5	Q5TA89	166 aa		10.61	□□□□□ -0.71
SS18-222	ENST00000582792	IZUMO1	Q8IYV9	350 aa		10.61	□□□□□ -0.71
SS18-222	ENST00000582792		Q8N6K4	173 aa		10.61	□□□□□ -0.71
SS18-222	ENST00000582792		Q8N9W7	124 aa		10.61	□□□□□ -0.71
SS18-222	ENST00000582792	SUMF2	Q8NBJ7	301 aa		10.61	□□□□□ -0.71
SS18-222	ENST00000582792	MRGPRD	Q8TDS7	321 aa		10.61	□□□□□ -0.71
SS18-222	ENST00000582792	EAF1	Q96JC9	268 aa	Predicted RBP	10.61	□□□□□ -0.71
SS18-222	ENST00000582792	DPCD	Q9BVM2	203 aa	Predicted RBP	10.61	□□□□□ -0.71
SS18-222	ENST00000582792	BARHL1	Q9BZE3	327 aa		10.61	□□□□□ -0.71
SS18-222	ENST00000582792	LPAR5	Q9H1C0	372 aa		10.61	□□□□□ -0.71
SS18-222	ENST00000582792	BANF2	Q9H503	90 aa		10.61	□□□□□ -0.71
SS18-222	ENST00000582792	TMEM272	A0A1B0GTI8	110 aa		10.6	□□□□□ -0.71
SS18-222	ENST00000582792	PDCD6	O75340	191 aa		10.6	□□□□□ -0.71
SS18-222	ENST00000582792	GAPDH	P04406	335 aa	Known RBP	10.6	□□□□□ -0.71
SS18-222	ENST00000582792	CLEC2L	P0C7M8	214 aa		10.6	□□□□□ -0.71
SS18-222	ENST00000582792	SSTR5	P35346	364 aa		10.6	□□□□□ -0.71
SS18-222	ENST00000582792	TMBIM6	P55061	237 aa		10.6	□□□□□ -0.71
SS18-222	ENST00000582792	ZNF260	Q3ZCT1	412 aa		10.6	□□□□□ -0.71
SS18-222	ENST00000582792	GPR107	Q5VW38	600 aa		10.6	□□□□□ -0.71
SS18-222	ENST00000582792	RSBN1	Q5VWQ0	802 aa	Predicted RBP	10.6	□□□□□ -0.71
SS18-222	ENST00000582792	MOB3B	Q86TA1	216 aa		10.6	□□□□□ -0.71
SS18-222	ENST00000582792	OR2T10	Q8NGZ9	312 aa		10.6	□□□□□ -0.71
SS18-222	ENST00000582792	RFESD	Q8TAC1	157 aa		10.6	□□□□□ -0.71
SS18-222	ENST00000582792	RAB2B	Q8WUD1	216 aa		10.6	□□□□□ -0.71
SS18-222	ENST00000582792	C4orf3	Q8WVX3	66 aa		10.6	□□□□□ -0.71
SS18-222	ENST00000582792	ABRACL	Q9P1F3	81 aa		10.6	□□□□□ -0.71
SS18-222	ENST00000582792	SMAD5-AS1	Q9Y6J3	95 aa		10.6	□□□□□ -0.71
SS18-222	ENST00000582792	BIRC6	Q9NR09	4857 aa		10.6	□□□□□ -0.71
SS18-222	ENST00000582792	IGHV3-72	A0A0B4J1Y9	119 aa		10.59	□□□□□ -0.71
SS18-222	ENST00000582792		A0A1W2PPE3	182 aa		10.59	□□□□□ -0.71
SS18-222	ENST00000582792	MCRIP1	C9JLW8	97 aa		10.59	□□□□□ -0.71

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