RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 OR10G2Q8NGC3 310 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 OR52R1Q8NGF1 315 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 OR10S1Q8NGN2 331 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 OR2G3Q8NGZ4 309 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 CMTM2Q8TAZ6 248 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 FNDC9Q8TBE3 224 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 TWIST2Q8WVJ9 160 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 LHX4Q969G2 390 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 IL22RA2Q969J5 263 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 FGGYQ96C11 551 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 FLYWCH2Q96CP2 140 aaKnown RBP2.74□□□□□ -1.97
VPS35-208ENST00000568612 DDIT4LQ96D03 193 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 STARD4Q96DR4 205 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 COQ2Q96H96 371 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 OXGR1Q96P68 337 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 LRRC3BQ96PB8 259 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 AQP10Q96PS8 301 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 OR4F4Q96R69 305 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 NRTNQ99748 197 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 SLC25A33Q9BSK2 321 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 TMEM204Q9BSN7 226 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 TSSK6Q9BXA6 273 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 COA1Q9GZY4 146 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 TMEM133Q9H2Q1 129 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 IFI27L2Q9H2X8 130 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 FNDC4Q9H6D8 234 aaPredicted RBP2.74□□□□□ -1.97
VPS35-208ENST00000568612 TBC1D17Q9HA65 648 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 NPVFQ9HCQ7 196 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 FGF20Q9NP95 211 aaPredicted RBP2.74□□□□□ -1.97
VPS35-208ENST00000568612 KCNIP1Q9NZI2 227 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 RALYQ9UKM9 306 aaKnown RBP2.74□□□□□ -1.97
VPS35-208ENST00000568612 CYSLTR1Q9Y271 337 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 FIS1Q9Y3D6 152 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 WSB1Q9Y6I7 421 aa2.74□□□□□ -1.97
VPS35-208ENST00000568612 TMEM131Q92545 1883 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 DSPPQ9NZW4 1301 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 COL11A1P12107 1806 aaPredicted RBP2.73□□□□□ -1.97
VPS35-208ENST00000568612 MCM3APO60318 1980 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 TRAV36DV7A0A075B6V5 113 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 TNFSF12-TNFSF13A0A0A6YY99 330 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 BORCS7-ASMTA0A0B4J1R7 106 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 TRAV8-6A0A0B4J262 113 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 A0A0G2JLM5 398 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 A0A0G2JNG1 304 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 TRBV4-1A0A0J9YWV2 114 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 TEX48A0A1B0GUV7 120 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 A0A1B0GVT2 93 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 A0A1B0GX51 115 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 MAP1LC3B2A6NCE7 125 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 A6NDN8 102 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 TMEM8BA6NDV4 472 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 GAGE12JA6NER3 117 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 MSGN1A6NI15 193 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 ZNF727A8MUV8 499 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 H7C1C5 153 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 J3KT08 172 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 J3QLI3 93 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 IFNL4K9M1U5 179 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 M0R129 80 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 SAP18O00422 153 aaKnown RBP2.73□□□□□ -1.97
VPS35-208ENST00000568612 TAPBPO15533 448 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 MLNRO43193 412 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 HCRTO43612 131 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 EDIL3O43854 480 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 OR1I1O60431 355 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 SLC16A7O60669 478 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 FCN3O75636 299 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 GAGE7O76087 117 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 PPP1R3DO95685 299 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 HLA-AP01891 365 aaKnown RBP2.73□□□□□ -1.97
VPS35-208ENST00000568612 HLA-DQA2P01906 255 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 H1F0P07305 194 aaKnown RBP2.73□□□□□ -1.97
VPS35-208ENST00000568612 NGFRP08138 427 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 IL3P08700 152 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 GAGE12FP0CL80 117 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 GAGE12GP0CL81 117 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 GAGE12IP0CL82 117 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 AKAIN1P0CW23 69 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 B4GALT1P15291 398 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 ZNF17P17021 662 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 PGCP20142 388 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 CSRP1P21291 193 aaKnown RBP2.73□□□□□ -1.97
VPS35-208ENST00000568612 PRTN3P24158 256 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 CD34P28906 385 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 GPR1P46091 355 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 XCR1P46094 333 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 OR1D4P47884 311 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 GZMMP51124 257 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 DAP3P51398 398 aaKnown RBP2.73□□□□□ -1.97
VPS35-208ENST00000568612 ATP1B3P54709 279 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 TCL1AP56279 114 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 RHOAP61586 193 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 DYNLT1P63172 113 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 SIRPAP78324 504 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 ZNF92Q03936 586 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 GAGE4Q13068 117 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 KLRD1Q13241 179 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 MFAP5Q13361 173 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 KIR2DS5Q14953 304 aa2.73□□□□□ -1.97
VPS35-208ENST00000568612 ATXN7L3Q14CW9 347 aaPredicted RBP2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms