RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 TNFRSF9Q07011 255 aa12.66□□□□□ -0.38
CDH3-205ENST00000566808 ATAD3CQ5T2N8 411 aa12.66□□□□□ -0.38
CDH3-205ENST00000566808 FAM131AQ6UXB0 335 aa12.66□□□□□ -0.38
CDH3-205ENST00000566808 ASCL4Q6XD76 172 aa12.66□□□□□ -0.38
CDH3-205ENST00000566808 KCTD20Q7Z5Y7 419 aa12.66□□□□□ -0.38
CDH3-205ENST00000566808 OR52N1Q8NH53 320 aa12.66□□□□□ -0.38
CDH3-205ENST00000566808 OR1L1Q8NH94 360 aa12.66□□□□□ -0.38
CDH3-205ENST00000566808 ZNF355PQ9NSJ1 428 aa12.66□□□□□ -0.38
CDH3-205ENST00000566808 SAA2-SAA4A0A096LPE2 208 aa12.65□□□□□ -0.38
CDH3-205ENST00000566808 AIREO43918 545 aa12.65□□□□□ -0.38
CDH3-205ENST00000566808 SAA2P0DJI9 122 aaPredicted RBP12.65□□□□□ -0.38
CDH3-205ENST00000566808 SNRPBP14678 240 aaKnown RBP12.65□□□□□ -0.38
CDH3-205ENST00000566808 ATF4P18848 351 aaPredicted RBP12.65□□□□□ -0.38
CDH3-205ENST00000566808 EPHA2P29317 976 aa12.65□□□□□ -0.38
CDH3-205ENST00000566808 EWSR1Q01844 656 aaKnown RBP eCLIP12.65□□□□□ -0.38
CDH3-205ENST00000566808 RPEL1Q2QD12 228 aa12.65□□□□□ -0.38
CDH3-205ENST00000566808 CD300EQ496F6 205 aaPredicted RBP12.65□□□□□ -0.38
CDH3-205ENST00000566808 MORN2Q502X0 79 aa12.65□□□□□ -0.38
CDH3-205ENST00000566808 SYT6Q5T7P8 510 aaPredicted RBP12.65□□□□□ -0.38
CDH3-205ENST00000566808 FAM71F2Q6NXP2 309 aa12.65□□□□□ -0.38
CDH3-205ENST00000566808 CANT1Q8WVQ1 401 aa12.65□□□□□ -0.38
CDH3-205ENST00000566808 CCDC124Q96CT7 223 aaKnown RBP12.65□□□□□ -0.38
CDH3-205ENST00000566808 OR2S2Q9NQN1 319 aa12.65□□□□□ -0.38
CDH3-205ENST00000566808 RCC2Q9P258 522 aaKnown RBP12.65□□□□□ -0.38
CDH3-205ENST00000566808 PEF1Q9UBV8 284 aaKnown RBP12.65□□□□□ -0.38
CDH3-205ENST00000566808 JPT1Q9UK76 154 aa12.65□□□□□ -0.38
CDH3-205ENST00000566808 ADAM30Q9UKF2 790 aa12.65□□□□□ -0.38
CDH3-205ENST00000566808 SLC16A6O15403 523 aa12.64□□□□□ -0.39
CDH3-205ENST00000566808 RAB3AP20336 220 aa12.64□□□□□ -0.39
CDH3-205ENST00000566808 AADACP22760 399 aa12.64□□□□□ -0.39
CDH3-205ENST00000566808 OR3A3P47888 321 aa12.64□□□□□ -0.39
CDH3-205ENST00000566808 DAPP51397 102 aa12.64□□□□□ -0.39
CDH3-205ENST00000566808 TMED1Q13445 227 aa12.64□□□□□ -0.39
CDH3-205ENST00000566808 GNMTQ14749 295 aa12.64□□□□□ -0.39
CDH3-205ENST00000566808 ZNF562Q6V9R5 426 aa12.64□□□□□ -0.39
CDH3-205ENST00000566808 NRBF2Q96F24 287 aa12.64□□□□□ -0.39
CDH3-205ENST00000566808 GGTLC1Q9BX51 225 aa12.64□□□□□ -0.39
CDH3-205ENST00000566808 OR5H14A6NHG9 310 aa12.63□□□□□ -0.39
CDH3-205ENST00000566808 ZNF785A8K8V0 405 aa12.63□□□□□ -0.39
CDH3-205ENST00000566808 CDRT1O95170 752 aa12.63□□□□□ -0.39
CDH3-205ENST00000566808 RPSAP08865 295 aaKnown RBP12.63□□□□□ -0.39
CDH3-205ENST00000566808 ADARB1P78563 741 aaKnown RBP12.63□□□□□ -0.39
CDH3-205ENST00000566808 DYRK1AQ13627 763 aa12.63□□□□□ -0.39
CDH3-205ENST00000566808 ZNF343Q6P1L6 599 aa12.63□□□□□ -0.39
CDH3-205ENST00000566808 ZNF529Q6P280 563 aa12.63□□□□□ -0.39
CDH3-205ENST00000566808 LYG2Q86SG7 212 aa12.63□□□□□ -0.39
CDH3-205ENST00000566808 WFDC3Q8IUB2 231 aa12.63□□□□□ -0.39
CDH3-205ENST00000566808 GAPTQ8N292 157 aa12.63□□□□□ -0.39
CDH3-205ENST00000566808 OR4K15Q8NH41 348 aa12.63□□□□□ -0.39
CDH3-205ENST00000566808 DYNLRB2Q8TF09 96 aa12.63□□□□□ -0.39
CDH3-205ENST00000566808 RFKQ969G6 155 aa12.63□□□□□ -0.39
CDH3-205ENST00000566808 METTL9Q9H1A3 318 aa12.63□□□□□ -0.39
CDH3-205ENST00000566808 SPACA1Q9HBV2 294 aa12.63□□□□□ -0.39
CDH3-205ENST00000566808 ARGLU1Q9NWB6 273 aaPredicted RBP12.63□□□□□ -0.39
CDH3-205ENST00000566808 FAT2Q9NYQ8 4349 aa12.62□□□□□ -0.39
CDH3-205ENST00000566808 SLC22A1O15245 554 aa12.62□□□□□ -0.39
CDH3-205ENST00000566808 RBBP9O75884 186 aa12.62□□□□□ -0.39
CDH3-205ENST00000566808 FADS2O95864 444 aaKnown RBP12.62□□□□□ -0.39
CDH3-205ENST00000566808 CA2P00918 260 aa12.62□□□□□ -0.39
CDH3-205ENST00000566808 TRBV12-3P01733 135 aa12.62□□□□□ -0.39
CDH3-205ENST00000566808 SERPINA2P20848 420 aa12.62□□□□□ -0.39
CDH3-205ENST00000566808 PPP1CCP36873 323 aaKnown RBP12.62□□□□□ -0.39
CDH3-205ENST00000566808 OR51A2Q8NGJ7 313 aa12.62□□□□□ -0.39
CDH3-205ENST00000566808 GRPEL2Q8TAA5 225 aa12.62□□□□□ -0.39
CDH3-205ENST00000566808 MRPS24Q96EL2 167 aaKnown RBP12.62□□□□□ -0.39
CDH3-205ENST00000566808 ZC4H2Q9NQZ6 224 aa12.62□□□□□ -0.39
CDH3-205ENST00000566808 PAK1IP1Q9NWT1 392 aaPredicted RBP12.62□□□□□ -0.39
CDH3-205ENST00000566808 ENOPH1Q9UHY7 261 aa12.62□□□□□ -0.39
CDH3-205ENST00000566808 A0A0B4J203 849 aa12.61□□□□□ -0.39
CDH3-205ENST00000566808 AQP12BA6NM10 295 aa12.61□□□□□ -0.39
CDH3-205ENST00000566808 SNX3O60493 162 aa12.61□□□□□ -0.39
CDH3-205ENST00000566808 GSTP1P09211 210 aaKnown RBP12.61□□□□□ -0.39
CDH3-205ENST00000566808 RCC1P18754 421 aaPredicted RBP12.61□□□□□ -0.39
CDH3-205ENST00000566808 GUCA2BQ16661 112 aa12.61□□□□□ -0.39
CDH3-205ENST00000566808 LY6G6FQ5SQ64 297 aa12.61□□□□□ -0.39
CDH3-205ENST00000566808 SLC16A13Q7RTY0 426 aa12.61□□□□□ -0.39
CDH3-205ENST00000566808 ZNF554Q86TJ5 538 aa12.61□□□□□ -0.39
CDH3-205ENST00000566808 AQP12AQ8IXF9 295 aa12.61□□□□□ -0.39
CDH3-205ENST00000566808 BVESQ8NE79 360 aa12.61□□□□□ -0.39
CDH3-205ENST00000566808 OR2AK2Q8NG84 335 aa12.61□□□□□ -0.39
CDH3-205ENST00000566808 TSEN15Q8WW01 171 aaKnown RBP12.61□□□□□ -0.39
CDH3-205ENST00000566808 GHSRQ92847 366 aa12.61□□□□□ -0.39
CDH3-205ENST00000566808 PELI1Q96FA3 418 aa12.61□□□□□ -0.39
CDH3-205ENST00000566808 CLCC1Q96S66 551 aa12.61□□□□□ -0.39
CDH3-205ENST00000566808 JAM3Q9BX67 310 aa12.61□□□□□ -0.39
CDH3-205ENST00000566808 FAM107BQ9H098 131 aa12.61□□□□□ -0.39
CDH3-205ENST00000566808 TAF9BQ9HBM6 251 aa12.61□□□□□ -0.39
CDH3-205ENST00000566808 METTL1Q9UBP6 276 aaKnown RBP12.61□□□□□ -0.39
CDH3-205ENST00000566808 TP53TG1Q9Y2A0 90 aa12.61□□□□□ -0.39
CDH3-205ENST00000566808 LOC102724200A0A096LPH7 203 aaPredicted RBP12.6□□□□□ -0.39
CDH3-205ENST00000566808 TMEM212A6NML5 194 aa12.6□□□□□ -0.39
CDH3-205ENST00000566808 MCRIP1C9JLW8 97 aa12.6□□□□□ -0.39
CDH3-205ENST00000566808 MITFO75030 526 aaPredicted RBP12.6□□□□□ -0.39
CDH3-205ENST00000566808 CA11O75493 328 aa12.6□□□□□ -0.39
CDH3-205ENST00000566808 SPDEFO95238 335 aa12.6□□□□□ -0.39
CDH3-205ENST00000566808 BMI1P35226 326 aa12.6□□□□□ -0.39
CDH3-205ENST00000566808 TMEM217Q8N7C4 229 aa12.6□□□□□ -0.39
CDH3-205ENST00000566808 OR52L2PQ8NGH6 319 aa12.6□□□□□ -0.39
CDH3-205ENST00000566808 PHLDA1Q8WV24 401 aaPredicted RBP12.6□□□□□ -0.39
CDH3-205ENST00000566808 RNF5Q99942 180 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms