RNA–Protein interactions for RNA: ENST00000566409.1

FANCA-220, Transcript of FA complementation group A, humanhuman

TSL 1 (best)

Gene FANCA, Length 395 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FANCA-220ENST00000566409 LSAMPQ13449 338 aa11.53□□□□□ -0.56
FANCA-220ENST00000566409 SSX1Q16384 188 aa11.53□□□□□ -0.56
FANCA-220ENST00000566409 KHDC1LQ5JSQ8 128 aa11.53□□□□□ -0.56
FANCA-220ENST00000566409 LY6G6FQ5SQ64 297 aa11.53□□□□□ -0.56
FANCA-220ENST00000566409 SVOPQ8N4V2 548 aa11.53□□□□□ -0.56
FANCA-220ENST00000566409 CNBD2Q96M20 576 aa11.53□□□□□ -0.56
FANCA-220ENST00000566409 YPEL2Q96QA6 119 aa11.53□□□□□ -0.56
FANCA-220ENST00000566409 HSPB9Q9BQS6 159 aa11.53□□□□□ -0.56
FANCA-220ENST00000566409 HDHD3Q9BSH5 251 aaPredicted RBP11.53□□□□□ -0.56
FANCA-220ENST00000566409 ABHD14AQ9BUJ0 271 aa11.53□□□□□ -0.56
FANCA-220ENST00000566409 COL7A1Q02388 2944 aa11.53□□□□□ -0.56
FANCA-220ENST00000566409 ARSBP15848 533 aa11.52□□□□□ -0.57
FANCA-220ENST00000566409 CALRP27797 417 aaKnown RBP11.52□□□□□ -0.57
FANCA-220ENST00000566409 CLDN12P56749 244 aa11.52□□□□□ -0.57
FANCA-220ENST00000566409 PLA2G7Q13093 441 aa11.52□□□□□ -0.57
FANCA-220ENST00000566409 TRAM1Q15629 374 aa11.52□□□□□ -0.57
FANCA-220ENST00000566409 FOXB2Q5VYV0 432 aa11.52□□□□□ -0.57
FANCA-220ENST00000566409 OR2W3Q7Z3T1 314 aa11.52□□□□□ -0.57
FANCA-220ENST00000566409 LINC00482Q8N8I6 264 aa11.52□□□□□ -0.57
FANCA-220ENST00000566409 GALMQ96C23 342 aa11.52□□□□□ -0.57
FANCA-220ENST00000566409 MRPL20Q9BYC9 149 aaKnown RBP11.52□□□□□ -0.57
FANCA-220ENST00000566409 PARP12Q9H0J9 701 aaKnown RBP11.52□□□□□ -0.57
FANCA-220ENST00000566409 VCX3BQ9H321 246 aa11.52□□□□□ -0.57
FANCA-220ENST00000566409 PLGRKTQ9HBL7 147 aa11.52□□□□□ -0.57
FANCA-220ENST00000566409 PLEKHJ1Q9NW61 149 aa11.52□□□□□ -0.57
FANCA-220ENST00000566409 AK3Q9UIJ7 227 aa11.52□□□□□ -0.57
FANCA-220ENST00000566409 LRRC42Q9Y546 428 aa11.52□□□□□ -0.57
FANCA-220ENST00000566409 SHISA3A0PJX4 238 aa11.51□□□□□ -0.57
FANCA-220ENST00000566409 LDLRAD4O15165 306 aa11.51□□□□□ -0.57
FANCA-220ENST00000566409 ARL6IP5O75915 188 aa11.51□□□□□ -0.57
FANCA-220ENST00000566409 PF4P02776 101 aa11.51□□□□□ -0.57
FANCA-220ENST00000566409 PSMA1P25786 263 aaKnown RBP11.51□□□□□ -0.57
FANCA-220ENST00000566409 CNTFRP26992 372 aa11.51□□□□□ -0.57
FANCA-220ENST00000566409 TBCEQ15813 527 aaPredicted RBP11.51□□□□□ -0.57
FANCA-220ENST00000566409 RAB11BQ15907 218 aa11.51□□□□□ -0.57
FANCA-220ENST00000566409 C2orf76Q3KRA6 126 aa11.51□□□□□ -0.57
FANCA-220ENST00000566409 LCNL1Q6ZST4 164 aa11.51□□□□□ -0.57
FANCA-220ENST00000566409 ZNF833PQ6ZTB9 187 aa11.51□□□□□ -0.57
FANCA-220ENST00000566409 C8orf86Q6ZUL3 223 aa11.51□□□□□ -0.57
FANCA-220ENST00000566409 FOXRED2Q8IWF2 684 aa11.51□□□□□ -0.57
FANCA-220ENST00000566409 MRPL41Q8IXM3 137 aaKnown RBP11.51□□□□□ -0.57
FANCA-220ENST00000566409 OR51D1Q8NGF3 324 aa11.51□□□□□ -0.57
FANCA-220ENST00000566409 OR8H1Q8NGG4 311 aa11.51□□□□□ -0.57
FANCA-220ENST00000566409 IL1F10Q8WWZ1 152 aa11.51□□□□□ -0.57
FANCA-220ENST00000566409 NABP2Q9BQ15 211 aa11.51□□□□□ -0.57
FANCA-220ENST00000566409 ZNF251Q9BRH9 671 aa11.51□□□□□ -0.57
FANCA-220ENST00000566409 IFI27L2Q9H2X8 130 aa11.51□□□□□ -0.57
FANCA-220ENST00000566409 ACOT13Q9NPJ3 140 aa11.51□□□□□ -0.57
FANCA-220ENST00000566409 NECAP2Q9NVZ3 263 aa11.51□□□□□ -0.57
FANCA-220ENST00000566409 AURKAIP1Q9NWT8 199 aaPredicted RBP11.51□□□□□ -0.57
FANCA-220ENST00000566409 SAA2-SAA4A0A096LPE2 208 aa11.5□□□□□ -0.57
FANCA-220ENST00000566409 TRBV6-6A0A0A6YYG2 114 aa11.5□□□□□ -0.57
FANCA-220ENST00000566409 AP4M1O00189 453 aa11.5□□□□□ -0.57
FANCA-220ENST00000566409 ST8SIA5O15466 376 aa11.5□□□□□ -0.57
FANCA-220ENST00000566409 SAA2P0DJI9 122 aaPredicted RBP11.5□□□□□ -0.57
FANCA-220ENST00000566409 HSPA13P48723 471 aa11.5□□□□□ -0.57
FANCA-220ENST00000566409 THBS3P49746 956 aa11.5□□□□□ -0.57
FANCA-220ENST00000566409 CFHR3Q02985 330 aa11.5□□□□□ -0.57
FANCA-220ENST00000566409 PLAC9Q5JTB6 97 aa11.5□□□□□ -0.57
FANCA-220ENST00000566409 OR2AK2Q8NG84 335 aa11.5□□□□□ -0.57
FANCA-220ENST00000566409 FAM3DQ96BQ1 224 aa11.5□□□□□ -0.57
FANCA-220ENST00000566409 ARHGAP5-AS1Q96IT6 56 aa11.5□□□□□ -0.57
FANCA-220ENST00000566409 RASL11BQ9BPW5 248 aa11.5□□□□□ -0.57
FANCA-220ENST00000566409 URM1Q9BTM9 101 aaKnown RBP11.5□□□□□ -0.57
FANCA-220ENST00000566409 ZFP57Q9NU63 452 aa11.5□□□□□ -0.57
FANCA-220ENST00000566409 HSF4Q9ULV5 492 aa11.5□□□□□ -0.57
FANCA-220ENST00000566409 RGS11O94810 467 aa11.49□□□□□ -0.57
FANCA-220ENST00000566409 RPLP1P05386 114 aaKnown RBP11.49□□□□□ -0.57
FANCA-220ENST00000566409 SLC2A2P11168 524 aaPredicted RBP11.49□□□□□ -0.57
FANCA-220ENST00000566409 SOX6P35712 828 aa11.49□□□□□ -0.57
FANCA-220ENST00000566409 VEGFCP49767 419 aa11.49□□□□□ -0.57
FANCA-220ENST00000566409 KRTAP10-11P60412 298 aa11.49□□□□□ -0.57
FANCA-220ENST00000566409 ACTBP60709 375 aa11.49□□□□□ -0.57
FANCA-220ENST00000566409 SLC35B1P78383 322 aa11.49□□□□□ -0.57
FANCA-220ENST00000566409 PNLIPRP3Q17RR3 467 aa11.49□□□□□ -0.57
FANCA-220ENST00000566409 ZNF367Q7RTV3 350 aa11.49□□□□□ -0.57
FANCA-220ENST00000566409 REC114Q7Z4M0 266 aa11.49□□□□□ -0.57
FANCA-220ENST00000566409 COMMD1Q8N668 190 aa11.49□□□□□ -0.57
FANCA-220ENST00000566409 RNF152Q8N8N0 203 aa11.49□□□□□ -0.57
FANCA-220ENST00000566409 SETD6Q8TBK2 473 aa11.49□□□□□ -0.57
FANCA-220ENST00000566409 AGMATQ9BSE5 352 aa11.49□□□□□ -0.57
FANCA-220ENST00000566409 PECRQ9BY49 303 aa11.49□□□□□ -0.57
FANCA-220ENST00000566409 CHMP1AQ9HD42 196 aaPredicted RBP11.49□□□□□ -0.57
FANCA-220ENST00000566409 ABRACLQ9P1F3 81 aa11.49□□□□□ -0.57
FANCA-220ENST00000566409 SLC23A1Q9UHI7 598 aa11.49□□□□□ -0.57
FANCA-220ENST00000566409 RAB26Q9ULW5 256 aa11.49□□□□□ -0.57
FANCA-220ENST00000566409 V9GY05 133 aa11.49□□□□□ -0.57
FANCA-220ENST00000566409 TMEM272A0A1B0GTI8 110 aa11.48□□□□□ -0.57
FANCA-220ENST00000566409 PROP1O75360 226 aa11.48□□□□□ -0.57
FANCA-220ENST00000566409 ATP6V1G2O95670 118 aa11.48□□□□□ -0.57
FANCA-220ENST00000566409 IGF1P05019 195 aa11.48□□□□□ -0.57
FANCA-220ENST00000566409 SCTP09683 121 aa11.48□□□□□ -0.57
FANCA-220ENST00000566409 CT45A6P0DMU7 189 aa11.48□□□□□ -0.57
FANCA-220ENST00000566409 CT45A5P0DMU8 189 aa11.48□□□□□ -0.57
FANCA-220ENST00000566409 CT45A7P0DMV0 189 aa11.48□□□□□ -0.57
FANCA-220ENST00000566409 OR10A3P58181 314 aa11.48□□□□□ -0.57
FANCA-220ENST00000566409 MMDQ15546 238 aa11.48□□□□□ -0.57
FANCA-220ENST00000566409 RPL39P5Q59GN2 51 aa11.48□□□□□ -0.57
FANCA-220ENST00000566409 HES5Q5TA89 166 aa11.48□□□□□ -0.57
FANCA-220ENST00000566409 TEX38Q6PEX7 206 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms