RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 TGP01266 2768 aa16.37■□□□□ 0.21
CLN3-219ENST00000565778 AP4M1O00189 453 aa16.36■□□□□ 0.21
CLN3-219ENST00000565778 SLC17A2O00624 439 aa16.36■□□□□ 0.21
CLN3-219ENST00000565778 SOCS1O15524 211 aa16.36■□□□□ 0.21
CLN3-219ENST00000565778 CALRP27797 417 aaKnown RBP16.36■□□□□ 0.21
CLN3-219ENST00000565778 GPR12P47775 334 aa16.36■□□□□ 0.21
CLN3-219ENST00000565778 F2RL1P55085 397 aa16.36■□□□□ 0.21
CLN3-219ENST00000565778 GFI1Q99684 422 aa16.36■□□□□ 0.21
CLN3-219ENST00000565778 LPAR5Q9H1C0 372 aa16.36■□□□□ 0.21
CLN3-219ENST00000565778 ZFP57Q9NU63 452 aa16.36■□□□□ 0.21
CLN3-219ENST00000565778 NECAP2Q9NVZ3 263 aa16.36■□□□□ 0.21
CLN3-219ENST00000565778 STEAP1Q9UHE8 339 aa16.36■□□□□ 0.21
CLN3-219ENST00000565778 FABP5Q01469 135 aa16.35■□□□□ 0.21
CLN3-219ENST00000565778 HMGN3Q15651 99 aa16.35■□□□□ 0.21
CLN3-219ENST00000565778 RAB11BQ15907 218 aa16.35■□□□□ 0.21
CLN3-219ENST00000565778 OR2W3Q7Z3T1 314 aa16.35■□□□□ 0.21
CLN3-219ENST00000565778 COMMD1Q8N668 190 aa16.35■□□□□ 0.21
CLN3-219ENST00000565778 OR51D1Q8NGF3 324 aa16.35■□□□□ 0.21
CLN3-219ENST00000565778 GON7Q9BXV9 100 aa16.35■□□□□ 0.21
CLN3-219ENST00000565778 ACOT13Q9NPJ3 140 aa16.35■□□□□ 0.21
CLN3-219ENST00000565778 A0A0A6YYD4 124 aa16.34■□□□□ 0.21
CLN3-219ENST00000565778 NUDT19A8MXV4 375 aa16.34■□□□□ 0.21
CLN3-219ENST00000565778 PSMD7P51665 324 aa16.34■□□□□ 0.21
CLN3-219ENST00000565778 RPL23AP62750 156 aaKnown RBP16.34■□□□□ 0.21
CLN3-219ENST00000565778 LSAMPQ13449 338 aa16.34■□□□□ 0.21
CLN3-219ENST00000565778 PNLIPRP3Q17RR3 467 aa16.34■□□□□ 0.21
CLN3-219ENST00000565778 LY6G6FQ5SQ64 297 aa16.34■□□□□ 0.21
CLN3-219ENST00000565778 FOXB2Q5VYV0 432 aa16.34■□□□□ 0.21
CLN3-219ENST00000565778 TEX38Q6PEX7 206 aa16.34■□□□□ 0.21
CLN3-219ENST00000565778 ODF3L1Q8IXM7 274 aa16.34■□□□□ 0.21
CLN3-219ENST00000565778 OR2AK2Q8NG84 335 aa16.34■□□□□ 0.21
CLN3-219ENST00000565778 RIMS4Q9H426 269 aaPredicted RBP16.34■□□□□ 0.21
CLN3-219ENST00000565778 BLOC1S6Q9UL45 172 aa16.34■□□□□ 0.21
CLN3-219ENST00000565778 V9GY05 133 aa16.34■□□□□ 0.21
CLN3-219ENST00000565778 NAPSAO96009 420 aa16.33■□□□□ 0.2
CLN3-219ENST00000565778 SOX6P35712 828 aa16.33■□□□□ 0.2
CLN3-219ENST00000565778 RANBP1P43487 201 aa16.33■□□□□ 0.2
CLN3-219ENST00000565778 VEGFCP49767 419 aa16.33■□□□□ 0.2
CLN3-219ENST00000565778 CLDN12P56749 244 aa16.33■□□□□ 0.2
CLN3-219ENST00000565778 C2orf76Q3KRA6 126 aa16.33■□□□□ 0.2
CLN3-219ENST00000565778 SVOPQ8N4V2 548 aa16.33■□□□□ 0.2
CLN3-219ENST00000565778 FAM89BQ8N5H3 189 aa16.33■□□□□ 0.2
CLN3-219ENST00000565778 RCC1LQ96I51 464 aaKnown RBP16.33■□□□□ 0.2
CLN3-219ENST00000565778 MRPL20Q9BYC9 149 aaKnown RBP16.33■□□□□ 0.2
CLN3-219ENST00000565778 AK3Q9UIJ7 227 aa16.33■□□□□ 0.2
CLN3-219ENST00000565778 RRP9O43818 475 aaKnown RBP16.32■□□□□ 0.2
CLN3-219ENST00000565778 OR3A3P47888 321 aa16.32■□□□□ 0.2
CLN3-219ENST00000565778 MMDQ15546 238 aa16.32■□□□□ 0.2
CLN3-219ENST00000565778 ZNF880Q6PDB4 577 aa16.32■□□□□ 0.2
CLN3-219ENST00000565778 C18orf65Q6ZTR6 163 aa16.32■□□□□ 0.2
CLN3-219ENST00000565778 FAM71E2Q8N5Q1 922 aa16.32■□□□□ 0.2
CLN3-219ENST00000565778 KLHL30-AS1Q8NEE0 82 aa16.32■□□□□ 0.2
CLN3-219ENST00000565778 MRAPQ8TCY5 172 aa16.32■□□□□ 0.2
CLN3-219ENST00000565778 FAM3DQ96BQ1 224 aa16.32■□□□□ 0.2
CLN3-219ENST00000565778 NABP2Q9BQ15 211 aa16.32■□□□□ 0.2
CLN3-219ENST00000565778 HDHD3Q9BSH5 251 aaPredicted RBP16.32■□□□□ 0.2
CLN3-219ENST00000565778 RAB26Q9ULW5 256 aa16.32■□□□□ 0.2
CLN3-219ENST00000565778 NOTCH3Q9UM47 2321 aa16.31■□□□□ 0.2
CLN3-219ENST00000565778 SLC2A2P11168 524 aaPredicted RBP16.31■□□□□ 0.2
CLN3-219ENST00000565778 TMEM50BP56557 158 aa16.31■□□□□ 0.2
CLN3-219ENST00000565778 TBCEQ15813 527 aaPredicted RBP16.31■□□□□ 0.2
CLN3-219ENST00000565778 Q6ZPA2 131 aa16.31■□□□□ 0.2
CLN3-219ENST00000565778 C8orf86Q6ZUL3 223 aa16.31■□□□□ 0.2
CLN3-219ENST00000565778 MOB1BQ7L9L4 216 aa16.31■□□□□ 0.2
CLN3-219ENST00000565778 ZNF367Q7RTV3 350 aa16.31■□□□□ 0.2
CLN3-219ENST00000565778 HSPB9Q9BQS6 159 aa16.31■□□□□ 0.2
CLN3-219ENST00000565778 ZNF251Q9BRH9 671 aa16.31■□□□□ 0.2
CLN3-219ENST00000565778 AURKAIP1Q9NWT8 199 aaPredicted RBP16.31■□□□□ 0.2
CLN3-219ENST00000565778 PIPOXQ9P0Z9 390 aa16.31■□□□□ 0.2
CLN3-219ENST00000565778 HSF4Q9ULV5 492 aa16.31■□□□□ 0.2
CLN3-219ENST00000565778 SAA2-SAA4A0A096LPE2 208 aa16.3■□□□□ 0.2
CLN3-219ENST00000565778 ST8SIA5O15466 376 aa16.3■□□□□ 0.2
CLN3-219ENST00000565778 DENRO43583 198 aaKnown RBP16.3■□□□□ 0.2
CLN3-219ENST00000565778 DUS4LO95620 317 aaKnown RBP16.3■□□□□ 0.2
CLN3-219ENST00000565778 SAA2P0DJI9 122 aaPredicted RBP16.3■□□□□ 0.2
CLN3-219ENST00000565778 VDAC1P21796 283 aa16.3■□□□□ 0.2
CLN3-219ENST00000565778 SLC6A1P30531 599 aa16.3■□□□□ 0.2
CLN3-219ENST00000565778 THBS3P49746 956 aa16.3■□□□□ 0.2
CLN3-219ENST00000565778 ACTBP60709 375 aa16.3■□□□□ 0.2
CLN3-219ENST00000565778 CXorf66Q5JRM2 361 aaPredicted RBP16.3■□□□□ 0.2
CLN3-219ENST00000565778 HES5Q5TA89 166 aa16.3■□□□□ 0.2
CLN3-219ENST00000565778 ZNF833PQ6ZTB9 187 aa16.3■□□□□ 0.2
CLN3-219ENST00000565778 ZNF695Q8IW36 515 aa16.3■□□□□ 0.2
CLN3-219ENST00000565778 MRPL41Q8IXM3 137 aaKnown RBP16.3■□□□□ 0.2
CLN3-219ENST00000565778 LINC00482Q8N8I6 264 aa16.3■□□□□ 0.2
CLN3-219ENST00000565778 OR56B1Q8NGI3 324 aa16.3■□□□□ 0.2
CLN3-219ENST00000565778 ARHGAP5-AS1Q96IT6 56 aa16.3■□□□□ 0.2
CLN3-219ENST00000565778 RITA1Q96K30 269 aa16.3■□□□□ 0.2
CLN3-219ENST00000565778 PECRQ9BY49 303 aa16.3■□□□□ 0.2
CLN3-219ENST00000565778 SLC23A1Q9UHI7 598 aa16.3■□□□□ 0.2
CLN3-219ENST00000565778 ZNF107Q9UII5 783 aaPredicted RBP16.3■□□□□ 0.2
CLN3-219ENST00000565778 MGAT4AQ9UM21 535 aa16.3■□□□□ 0.2
CLN3-219ENST00000565778 TRBV6-6A0A0A6YYG2 114 aa16.29■□□□□ 0.2
CLN3-219ENST00000565778 PDCD5O14737 125 aa16.29■□□□□ 0.2
CLN3-219ENST00000565778 RAB29O14966 203 aa16.29■□□□□ 0.2
CLN3-219ENST00000565778 HSPA12AO43301 675 aa16.29■□□□□ 0.2
CLN3-219ENST00000565778 RPLP1P05386 114 aaKnown RBP16.29■□□□□ 0.2
CLN3-219ENST00000565778 CEACAM6P40199 344 aa16.29■□□□□ 0.2
CLN3-219ENST00000565778 MYCNOSP40205 109 aa16.29■□□□□ 0.2
CLN3-219ENST00000565778 SSX1Q16384 188 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms