RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 MRPL20Q9BYC9 149 aaKnown RBP13.34□□□□□ -0.27
CLN3-216ENST00000565316 KLK15Q9H2R5 256 aa13.34□□□□□ -0.27
CLN3-216ENST00000565316 PLCXD1Q9NUJ7 323 aa13.34□□□□□ -0.27
CLN3-216ENST00000565316 PSORS1C1Q9UIG5 152 aa13.34□□□□□ -0.27
CLN3-216ENST00000565316 I3L521 148 aa13.33□□□□□ -0.28
CLN3-216ENST00000565316 SLC2A2P11168 524 aaPredicted RBP13.33□□□□□ -0.28
CLN3-216ENST00000565316 WNT4P56705 351 aa13.33□□□□□ -0.28
CLN3-216ENST00000565316 LRRC36Q1X8D7 754 aa13.33□□□□□ -0.28
CLN3-216ENST00000565316 NKAPLQ5M9Q1 402 aa13.33□□□□□ -0.28
CLN3-216ENST00000565316 ZNF491Q8N8L2 437 aa13.33□□□□□ -0.28
CLN3-216ENST00000565316 NPBQ8NG41 125 aa13.33□□□□□ -0.28
CLN3-216ENST00000565316 FBLIM1Q8WUP2 373 aa13.33□□□□□ -0.28
CLN3-216ENST00000565316 OR51J1Q9H342 316 aa13.33□□□□□ -0.28
CLN3-216ENST00000565316 LRRC42Q9Y546 428 aa13.33□□□□□ -0.28
CLN3-216ENST00000565316 DNAH7Q8WXX0 4024 aa13.32□□□□□ -0.28
CLN3-216ENST00000565316 IGHV7-81A0A0B4J1V7 117 aa13.32□□□□□ -0.28
CLN3-216ENST00000565316 G3V318 75 aa13.32□□□□□ -0.28
CLN3-216ENST00000565316 EBAG9O00559 213 aa13.32□□□□□ -0.28
CLN3-216ENST00000565316 RGS11O94810 467 aa13.32□□□□□ -0.28
CLN3-216ENST00000565316 MYF6P23409 242 aa13.32□□□□□ -0.28
CLN3-216ENST00000565316 CNTFRP26992 372 aa13.32□□□□□ -0.28
CLN3-216ENST00000565316 MAPK3P27361 379 aaPredicted RBP13.32□□□□□ -0.28
CLN3-216ENST00000565316 CHATP28329 748 aa13.32□□□□□ -0.28
CLN3-216ENST00000565316 ECI1P42126 302 aa13.32□□□□□ -0.28
CLN3-216ENST00000565316 C5orf64Q2M2E5 130 aa13.32□□□□□ -0.28
CLN3-216ENST00000565316 ASPHD1Q5U4P2 390 aa13.32□□□□□ -0.28
CLN3-216ENST00000565316 FAM46BQ96A09 425 aa13.32□□□□□ -0.28
CLN3-216ENST00000565316 CST11Q9H112 138 aa13.32□□□□□ -0.28
CLN3-216ENST00000565316 GNB4Q9HAV0 340 aa13.32□□□□□ -0.28
CLN3-216ENST00000565316 VSIG4Q9Y279 399 aa13.32□□□□□ -0.28
CLN3-216ENST00000565316 WSB1Q9Y6I7 421 aa13.32□□□□□ -0.28
CLN3-216ENST00000565316 U3KQK5 164 aa13.32□□□□□ -0.28
CLN3-216ENST00000565316 ATP6V0E1O15342 81 aa13.31□□□□□ -0.28
CLN3-216ENST00000565316 NBR2O15453 112 aa13.31□□□□□ -0.28
CLN3-216ENST00000565316 GNAO1P09471 354 aa13.31□□□□□ -0.28
CLN3-216ENST00000565316 UBBP0CG47 229 aa13.31□□□□□ -0.28
CLN3-216ENST00000565316 OR3A3P47888 321 aa13.31□□□□□ -0.28
CLN3-216ENST00000565316 INSL3P51460 131 aa13.31□□□□□ -0.28
CLN3-216ENST00000565316 HMGN3Q15651 99 aa13.31□□□□□ -0.28
CLN3-216ENST00000565316 ZNF260Q3ZCT1 412 aa13.31□□□□□ -0.28
CLN3-216ENST00000565316 TMEM65Q6PI78 240 aa13.31□□□□□ -0.28
CLN3-216ENST00000565316 NANOGP1Q8N7R0 232 aa13.31□□□□□ -0.28
CLN3-216ENST00000565316 MINDY2Q8NBR6 621 aa13.31□□□□□ -0.28
CLN3-216ENST00000565316 OR1N2Q8NGR9 330 aa13.31□□□□□ -0.28
CLN3-216ENST00000565316 GALMQ96C23 342 aa13.31□□□□□ -0.28
CLN3-216ENST00000565316 SULT4A1Q9BR01 284 aa13.31□□□□□ -0.28
CLN3-216ENST00000565316 ZNF251Q9BRH9 671 aa13.31□□□□□ -0.28
CLN3-216ENST00000565316 ANKRD60Q9BZ19 345 aa13.31□□□□□ -0.28
CLN3-216ENST00000565316 FKBP14Q9NWM8 211 aa13.31□□□□□ -0.28
CLN3-216ENST00000565316 SAA2-SAA4A0A096LPE2 208 aa13.3□□□□□ -0.28
CLN3-216ENST00000565316 TRAV41A0A0B4J266 112 aa13.3□□□□□ -0.28
CLN3-216ENST00000565316 MYL12BO14950 172 aa13.3□□□□□ -0.28
CLN3-216ENST00000565316 NDUFA3O95167 84 aa13.3□□□□□ -0.28
CLN3-216ENST00000565316 OR8U8P0C7N1 319 aa13.3□□□□□ -0.28
CLN3-216ENST00000565316 SAA2P0DJI9 122 aaPredicted RBP13.3□□□□□ -0.28
CLN3-216ENST00000565316 CD37P11049 281 aa13.3□□□□□ -0.28
CLN3-216ENST00000565316 RAB9AP51151 201 aa13.3□□□□□ -0.28
CLN3-216ENST00000565316 RPS27AP62979 156 aaKnown RBP13.3□□□□□ -0.28
CLN3-216ENST00000565316 ZNF616Q08AN1 781 aa13.3□□□□□ -0.28
CLN3-216ENST00000565316 C19orf54Q5BKX5 351 aa13.3□□□□□ -0.28
CLN3-216ENST00000565316 C1orf100Q5SVJ3 147 aa13.3□□□□□ -0.28
CLN3-216ENST00000565316 FAM71F2Q6NXP2 309 aa13.3□□□□□ -0.28
CLN3-216ENST00000565316 AHSA2Q719I0 299 aa13.3□□□□□ -0.28
CLN3-216ENST00000565316 LRRTM1Q86UE6 522 aa13.3□□□□□ -0.28
CLN3-216ENST00000565316 C8orf59Q8N0T1 100 aaPredicted RBP13.3□□□□□ -0.28
CLN3-216ENST00000565316 OR2AK2Q8NG84 335 aa13.3□□□□□ -0.28
CLN3-216ENST00000565316 NEDD4LQ96PU5 975 aa13.3□□□□□ -0.28
CLN3-216ENST00000565316 IFI27L2Q9H2X8 130 aa13.3□□□□□ -0.28
CLN3-216ENST00000565316 PARP11Q9NR21 331 aa13.3□□□□□ -0.28
CLN3-216ENST00000565316 ZNF256Q9Y2P7 627 aaPredicted RBP13.3□□□□□ -0.28
CLN3-216ENST00000565316 BLVRBP30043 206 aaPredicted RBP13.29□□□□□ -0.28
CLN3-216ENST00000565316 CRIP2P52943 208 aaPredicted RBP13.29□□□□□ -0.28
CLN3-216ENST00000565316 GNB1P62873 340 aa13.29□□□□□ -0.28
CLN3-216ENST00000565316 INSL4Q14641 139 aa13.29□□□□□ -0.28
CLN3-216ENST00000565316 RNLSQ5VYX0 342 aa13.29□□□□□ -0.28
CLN3-216ENST00000565316 OR10K2Q6IF99 312 aa13.29□□□□□ -0.28
CLN3-216ENST00000565316 LIN54Q6MZP7 749 aa13.29□□□□□ -0.28
CLN3-216ENST00000565316 ZNF880Q6PDB4 577 aa13.29□□□□□ -0.28
CLN3-216ENST00000565316 MS4A15Q8N5U1 240 aa13.29□□□□□ -0.28
CLN3-216ENST00000565316 PHYHIPQ92561 330 aa13.29□□□□□ -0.28
CLN3-216ENST00000565316 FAAP24Q9BTP7 215 aa13.29□□□□□ -0.28
CLN3-216ENST00000565316 HUWE1Q7Z6Z7 4374 aaKnown RBP13.29□□□□□ -0.28
CLN3-216ENST00000565316 NAPSAO96009 420 aa13.28□□□□□ -0.28
CLN3-216ENST00000565316 QRFPP83859 136 aa13.28□□□□□ -0.28
CLN3-216ENST00000565316 ACSM3Q53FZ2 586 aa13.28□□□□□ -0.28
CLN3-216ENST00000565316 C6orf201Q7Z4U5 140 aa13.28□□□□□ -0.28
CLN3-216ENST00000565316 SVOPQ8N4V2 548 aa13.28□□□□□ -0.28
CLN3-216ENST00000565316 TM2D1Q9BX74 207 aa13.28□□□□□ -0.28
CLN3-216ENST00000565316 ABRACLQ9P1F3 81 aa13.28□□□□□ -0.28
CLN3-216ENST00000565316 ERGIC3Q9Y282 383 aa13.28□□□□□ -0.28
CLN3-216ENST00000565316 HTR2CP28335 458 aa13.27□□□□□ -0.29
CLN3-216ENST00000565316 NDPQ00604 133 aa13.27□□□□□ -0.29
CLN3-216ENST00000565316 UNC119Q13432 240 aa13.27□□□□□ -0.29
CLN3-216ENST00000565316 FAM27D1Q5T7N8 215 aa13.27□□□□□ -0.29
CLN3-216ENST00000565316 GLT8D1Q68CQ7 371 aa13.27□□□□□ -0.29
CLN3-216ENST00000565316 ZNF660Q6AZW8 331 aaPredicted RBP13.27□□□□□ -0.29
CLN3-216ENST00000565316 BPIFB6Q8NFQ5 453 aa13.27□□□□□ -0.29
CLN3-216ENST00000565316 KCNG3Q8TAE7 436 aa13.27□□□□□ -0.29
CLN3-216ENST00000565316 TMEM59Q9BXS4 323 aa13.27□□□□□ -0.29
CLN3-216ENST00000565316 PIPOXQ9P0Z9 390 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms