RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 RGS10O43665 173 aa17.67■□□□□ 0.42
CLN3-215ENST00000565236 BPNT1O95861 308 aa17.67■□□□□ 0.42
CLN3-215ENST00000565236 BLVRBP30043 206 aaPredicted RBP17.67■□□□□ 0.42
CLN3-215ENST00000565236 UNC119Q13432 240 aa17.67■□□□□ 0.42
CLN3-215ENST00000565236 CXorf66Q5JRM2 361 aaPredicted RBP17.67■□□□□ 0.42
CLN3-215ENST00000565236 NICN1Q9BSH3 213 aa17.67■□□□□ 0.42
CLN3-215ENST00000565236 KCNK15Q9H427 330 aa17.67■□□□□ 0.42
CLN3-215ENST00000565236 CHMP1AQ9HD42 196 aaPredicted RBP17.67■□□□□ 0.42
CLN3-215ENST00000565236 PLEKHJ1Q9NW61 149 aa17.67■□□□□ 0.42
CLN3-215ENST00000565236 TMEM14DPA8MWL7 114 aa17.66■□□□□ 0.42
CLN3-215ENST00000565236 MYF6P23409 242 aa17.66■□□□□ 0.42
CLN3-215ENST00000565236 QRFPP83859 136 aa17.66■□□□□ 0.42
CLN3-215ENST00000565236 TPBGQ13641 420 aa17.66■□□□□ 0.42
CLN3-215ENST00000565236 MMDQ15546 238 aa17.66■□□□□ 0.42
CLN3-215ENST00000565236 TRAM1Q15629 374 aa17.66■□□□□ 0.42
CLN3-215ENST00000565236 HMGN3Q15651 99 aa17.66■□□□□ 0.42
CLN3-215ENST00000565236 LY6G6FQ5SQ64 297 aa17.66■□□□□ 0.42
CLN3-215ENST00000565236 ODF3L1Q8IXM7 274 aa17.66■□□□□ 0.42
CLN3-215ENST00000565236 OR2AK2Q8NG84 335 aa17.66■□□□□ 0.42
CLN3-215ENST00000565236 IL1F10Q8WWZ1 152 aa17.66■□□□□ 0.42
CLN3-215ENST00000565236 DPF1Q92782 380 aa17.66■□□□□ 0.42
CLN3-215ENST00000565236 HSPB9Q9BQS6 159 aa17.66■□□□□ 0.42
CLN3-215ENST00000565236 MCRIP2Q9BUT9 160 aaKnown RBP17.66■□□□□ 0.42
CLN3-215ENST00000565236 CCDC90BQ9GZT6 254 aa17.66■□□□□ 0.42
CLN3-215ENST00000565236 PLGRKTQ9HBL7 147 aa17.66■□□□□ 0.42
CLN3-215ENST00000565236 STEAP1Q9UHE8 339 aa17.66■□□□□ 0.42
CLN3-215ENST00000565236 RPLP1P05386 114 aaKnown RBP17.65■□□□□ 0.42
CLN3-215ENST00000565236 FOXE3Q13461 319 aa17.65■□□□□ 0.42
CLN3-215ENST00000565236 TMEM91Q6ZNR0 172 aa17.65■□□□□ 0.42
CLN3-215ENST00000565236 SETD6Q8TBK2 473 aa17.65■□□□□ 0.42
CLN3-215ENST00000565236 URM1Q9BTM9 101 aaKnown RBP17.65■□□□□ 0.42
CLN3-215ENST00000565236 MRPL20Q9BYC9 149 aaKnown RBP17.65■□□□□ 0.42
CLN3-215ENST00000565236 ISYNA1Q9NPH2 558 aa17.65■□□□□ 0.42
CLN3-215ENST00000565236 ARL6IP5O75915 188 aa17.64■□□□□ 0.41
CLN3-215ENST00000565236 NAPSAO96009 420 aa17.64■□□□□ 0.41
CLN3-215ENST00000565236 ELANEP08246 267 aa17.64■□□□□ 0.41
CLN3-215ENST00000565236 SLC2A2P11168 524 aaPredicted RBP17.64■□□□□ 0.41
CLN3-215ENST00000565236 ARSBP15848 533 aa17.64■□□□□ 0.41
CLN3-215ENST00000565236 VDAC1P21796 283 aa17.64■□□□□ 0.41
CLN3-215ENST00000565236 PSMA1P25786 263 aaKnown RBP17.64■□□□□ 0.41
CLN3-215ENST00000565236 HOXD3P31249 432 aaPredicted RBP17.64■□□□□ 0.41
CLN3-215ENST00000565236 OR3A3P47888 321 aa17.64■□□□□ 0.41
CLN3-215ENST00000565236 KRTAP10-11P60412 298 aa17.64■□□□□ 0.41
CLN3-215ENST00000565236 RPS25P62851 125 aaKnown RBP17.64■□□□□ 0.41
CLN3-215ENST00000565236 P2RY14Q15391 338 aa17.64■□□□□ 0.41
CLN3-215ENST00000565236 LCNL1Q6ZST4 164 aa17.64■□□□□ 0.41
CLN3-215ENST00000565236 SVOPQ8N4V2 548 aa17.64■□□□□ 0.41
CLN3-215ENST00000565236 P2RX4Q99571 388 aa17.64■□□□□ 0.41
CLN3-215ENST00000565236 NABP2Q9BQ15 211 aa17.64■□□□□ 0.41
CLN3-215ENST00000565236 ZNF251Q9BRH9 671 aa17.64■□□□□ 0.41
CLN3-215ENST00000565236 ANKRD60Q9BZ19 345 aa17.64■□□□□ 0.41
CLN3-215ENST00000565236 RIMS4Q9H426 269 aaPredicted RBP17.64■□□□□ 0.41
CLN3-215ENST00000565236 ZNF107Q9UII5 783 aaPredicted RBP17.64■□□□□ 0.41
CLN3-215ENST00000565236 AK6Q9Y3D8 172 aaKnown RBP17.64■□□□□ 0.41
CLN3-215ENST00000565236 K7EIL1 84 aa17.63■□□□□ 0.41
CLN3-215ENST00000565236 CCL24O00175 119 aa17.63■□□□□ 0.41
CLN3-215ENST00000565236 ACTBP60709 375 aa17.63■□□□□ 0.41
CLN3-215ENST00000565236 MLLT11Q13015 90 aaPredicted RBP17.63■□□□□ 0.41
CLN3-215ENST00000565236 DEFB121Q5J5C9 76 aa17.63■□□□□ 0.41
CLN3-215ENST00000565236 ZNF833PQ6ZTB9 187 aa17.63■□□□□ 0.41
CLN3-215ENST00000565236 RAX2Q96IS3 184 aa17.63■□□□□ 0.41
CLN3-215ENST00000565236 DUX3Q96PT4 197 aa17.63■□□□□ 0.41
CLN3-215ENST00000565236 LPAR5Q9H1C0 372 aa17.63■□□□□ 0.41
CLN3-215ENST00000565236 VCX3BQ9H321 246 aa17.63■□□□□ 0.41
CLN3-215ENST00000565236 SAA2-SAA4A0A096LPE2 208 aa17.62■□□□□ 0.41
CLN3-215ENST00000565236 A0A0A6YYD4 124 aa17.62■□□□□ 0.41
CLN3-215ENST00000565236 SLC17A2O00624 439 aa17.62■□□□□ 0.41
CLN3-215ENST00000565236 SOCS1O15524 211 aa17.62■□□□□ 0.41
CLN3-215ENST00000565236 IGHG4P01861 327 aa17.62■□□□□ 0.41
CLN3-215ENST00000565236 IGF1P05019 195 aa17.62■□□□□ 0.41
CLN3-215ENST00000565236 SAA2P0DJI9 122 aaPredicted RBP17.62■□□□□ 0.41
CLN3-215ENST00000565236 OR5H8P0DN80 308 aa17.62■□□□□ 0.41
CLN3-215ENST00000565236 CPEP16870 476 aa17.62■□□□□ 0.41
CLN3-215ENST00000565236 CRHBPP24387 322 aa17.62■□□□□ 0.41
CLN3-215ENST00000565236 CDX1P47902 265 aaPredicted RBP17.62■□□□□ 0.41
CLN3-215ENST00000565236 EGFEM1PQ0D2K5 195 aa17.62■□□□□ 0.41
CLN3-215ENST00000565236 ZNF880Q6PDB4 577 aa17.62■□□□□ 0.41
CLN3-215ENST00000565236 MOB1BQ7L9L4 216 aa17.62■□□□□ 0.41
CLN3-215ENST00000565236 PRSS48Q7RTY5 328 aa17.62■□□□□ 0.41
CLN3-215ENST00000565236 RNF152Q8N8N0 203 aa17.62■□□□□ 0.41
CLN3-215ENST00000565236 RITA1Q96K30 269 aa17.62■□□□□ 0.41
CLN3-215ENST00000565236 GFI1Q99684 422 aa17.62■□□□□ 0.41
CLN3-215ENST00000565236 RAB25P57735 213 aa17.61■□□□□ 0.41
CLN3-215ENST00000565236 CFHR3Q02985 330 aa17.61■□□□□ 0.41
CLN3-215ENST00000565236 KIR2DS1Q14954 304 aa17.61■□□□□ 0.41
CLN3-215ENST00000565236 RAB11BQ15907 218 aa17.61■□□□□ 0.41
CLN3-215ENST00000565236 FAM89BQ8N5H3 189 aa17.61■□□□□ 0.41
CLN3-215ENST00000565236 KCTD7Q96MP8 289 aa17.61■□□□□ 0.41
CLN3-215ENST00000565236 MGLLQ99685 303 aa17.61■□□□□ 0.41
CLN3-215ENST00000565236 CHCHD6Q9BRQ6 235 aa17.61■□□□□ 0.41
CLN3-215ENST00000565236 IFI27L2Q9H2X8 130 aa17.61■□□□□ 0.41
CLN3-215ENST00000565236 PIPOXQ9P0Z9 390 aa17.61■□□□□ 0.41
CLN3-215ENST00000565236 ZNF580Q9UK33 172 aa17.61■□□□□ 0.41
CLN3-215ENST00000565236 WI2-2373I1.2A0A1W2PRP0 233 aa17.6■□□□□ 0.41
CLN3-215ENST00000565236 RAB29O14966 203 aa17.6■□□□□ 0.41
CLN3-215ENST00000565236 NBR2O15453 112 aa17.6■□□□□ 0.41
CLN3-215ENST00000565236 ST8SIA5O15466 376 aa17.6■□□□□ 0.41
CLN3-215ENST00000565236 CNTFRP26992 372 aa17.6■□□□□ 0.41
CLN3-215ENST00000565236 CALRP27797 417 aaKnown RBP17.6■□□□□ 0.41
CLN3-215ENST00000565236 RANBP1P43487 201 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms