RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 HSD17B6O14756 317 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 SPINT2O43291 252 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 YPEL1O60688 119 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 TSPAN9O75954 239 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 NDUFA7O95182 113 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 SNRNP70P08621 437 aaKnown RBP7.35□□□□□ -1.23
VPS35-206ENST00000565228 PRRX1P54821 245 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 RAG2P55895 527 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 PROK1P58294 105 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 ZNF816Q0VGE8 651 aaPredicted RBP7.35□□□□□ -1.23
VPS35-206ENST00000565228 TIMM50Q3ZCQ8 353 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 RPL39P5Q59GN2 51 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 HACD4Q5VWC8 232 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 GPR141Q7Z602 305 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 ZNF554Q86TJ5 538 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 CLVS1Q8IUQ0 354 aaPredicted RBP7.35□□□□□ -1.23
VPS35-206ENST00000565228 Q8N6K4 173 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 OR5R1Q8NH85 324 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 WIPF2Q8TF74 440 aaPredicted RBP7.35□□□□□ -1.23
VPS35-206ENST00000565228 RTN4IP1Q8WWV3 396 aaPredicted RBP7.35□□□□□ -1.23
VPS35-206ENST00000565228 IL1F10Q8WWZ1 152 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 CREB3L1Q96BA8 519 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 ABHD14BQ96IU4 210 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 YPEL2Q96QA6 119 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 CABLES2Q9BTV7 478 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 TOLLIPQ9H0E2 274 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 C11orf54Q9H0W9 315 aaPredicted RBP7.35□□□□□ -1.23
VPS35-206ENST00000565228 ABCG5Q9H222 651 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 DCSTAMPQ9H295 470 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 MIXL1Q9H2W2 232 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 DPAGT1Q9H3H5 408 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 C16orf95Q9H693 158 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 CHMP1AQ9HD42 196 aaPredicted RBP7.35□□□□□ -1.23
VPS35-206ENST00000565228 VCX3AQ9NNX9 186 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 PLSCR3Q9NRY6 295 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 SERTAD4Q9NUC0 356 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 GNG12Q9UBI6 72 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 JPT1Q9UK76 154 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 RNF150Q9ULK6 438 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 PRKDCP78527 4128 aaKnown RBP7.35□□□□□ -1.23
VPS35-206ENST00000565228 SAA2-SAA4A0A096LPE2 208 aa7.34□□□□□ -1.23
VPS35-206ENST00000565228 MEIS3P1A6NDR6 274 aa7.34□□□□□ -1.23
VPS35-206ENST00000565228 FABP7O15540 132 aa7.34□□□□□ -1.23
VPS35-206ENST00000565228 HPGDSO60760 199 aa7.34□□□□□ -1.23
VPS35-206ENST00000565228 HLA-DQB1P01920 261 aa7.34□□□□□ -1.23
VPS35-206ENST00000565228 SAA2P0DJI9 122 aaPredicted RBP7.34□□□□□ -1.23
VPS35-206ENST00000565228 ELK1P19419 428 aa7.34□□□□□ -1.23
VPS35-206ENST00000565228 CNTFRP26992 372 aa7.34□□□□□ -1.23
VPS35-206ENST00000565228 RPL5P46777 297 aaKnown RBP7.34□□□□□ -1.23
VPS35-206ENST00000565228 EBI3Q14213 229 aa7.34□□□□□ -1.23
VPS35-206ENST00000565228 LY6G6FQ5SQ64 297 aa7.34□□□□□ -1.23
VPS35-206ENST00000565228 C10orf99Q6UWK7 81 aa7.34□□□□□ -1.23
VPS35-206ENST00000565228 GLDNQ6ZMI3 551 aaPredicted RBP7.34□□□□□ -1.23
VPS35-206ENST00000565228 LYG1Q8N1E2 194 aa7.34□□□□□ -1.23
VPS35-206ENST00000565228 SAMD12Q8N8I0 201 aa7.34□□□□□ -1.23
VPS35-206ENST00000565228 DYNC2LI1Q8TCX1 351 aa7.34□□□□□ -1.23
VPS35-206ENST00000565228 SNAPC3Q92966 411 aa7.34□□□□□ -1.23
VPS35-206ENST00000565228 TOMM40LQ969M1 308 aa7.34□□□□□ -1.23
VPS35-206ENST00000565228 GALMQ96C23 342 aa7.34□□□□□ -1.23
VPS35-206ENST00000565228 ABHD14AQ9BUJ0 271 aa7.34□□□□□ -1.23
VPS35-206ENST00000565228 MRPL20Q9BYC9 149 aaKnown RBP7.34□□□□□ -1.23
VPS35-206ENST00000565228 AUNIPQ9H7T9 357 aa7.34□□□□□ -1.23
VPS35-206ENST00000565228 ABRACLQ9P1F3 81 aa7.34□□□□□ -1.23
VPS35-206ENST00000565228 SLC23A1Q9UHI7 598 aa7.34□□□□□ -1.23
VPS35-206ENST00000565228 MMP24Q9Y5R2 645 aa7.34□□□□□ -1.23
VPS35-206ENST00000565228 ETV7Q9Y603 341 aa7.34□□□□□ -1.23
VPS35-206ENST00000565228 TRBV6-7A0A0A0MS04 114 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 IGKV1D-13A0A0B4J2D9 117 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 METTL21EPA6NDL7 271 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 SERPINE3A8MV23 424 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 H3BMQ9 156 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 CTDSP2O14595 271 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 IGKV1D-33P01593 117 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 IGKV1-33P01594 117 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 IGLV2-14P01704 120 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 CT45A6P0DMU7 189 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 CT45A5P0DMU8 189 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 CT45A7P0DMV0 189 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 IGKV1-13P0DP09 117 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 CEACAM6P40199 344 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 F2RL1P55085 397 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 SCAND1P57086 179 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 TAS2R20P59543 309 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 HNF4GQ14541 408 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 Q3ZCU0 254 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 FOXB2Q5VYV0 432 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 DHRS7BQ6IAN0 325 aaPredicted RBP7.33□□□□□ -1.24
VPS35-206ENST00000565228 TRAT1Q6PIZ9 186 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 Q6ZS49 121 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 ZNF833PQ6ZTB9 187 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 Q8N2B8 174 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 OR10X1Q8NGY0 326 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 WFDC12Q8WWY7 111 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 RPEQ96AT9 228 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 EAF1Q96JC9 268 aaPredicted RBP7.33□□□□□ -1.24
VPS35-206ENST00000565228 RBM14Q96PK6 669 aaKnown RBP7.33□□□□□ -1.24
VPS35-206ENST00000565228 NABP2Q9BQ15 211 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 ST6GALNAC5Q9BVH7 336 aa7.33□□□□□ -1.24
VPS35-206ENST00000565228 RIMS4Q9H426 269 aaPredicted RBP7.33□□□□□ -1.24
VPS35-206ENST00000565228 RDH8Q9NYR8 311 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms