RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 RAB39BQ96DA2 213 aa11.42□□□□□ -0.58
CLK3-215ENST00000564353 MISP3Q96FF7 219 aa11.42□□□□□ -0.58
CLK3-215ENST00000564353 WDYHV1Q96HA8 205 aa11.42□□□□□ -0.58
CLK3-215ENST00000564353 LINC00470Q9BZP3 86 aa11.42□□□□□ -0.58
CLK3-215ENST00000564353 SPRY4Q9C004 299 aa11.42□□□□□ -0.58
CLK3-215ENST00000564353 SLC25A31Q9H0C2 315 aa11.42□□□□□ -0.58
CLK3-215ENST00000564353 RNF122Q9H9V4 155 aa11.42□□□□□ -0.58
CLK3-215ENST00000564353 STRAPQ9Y3F4 350 aaKnown RBP11.42□□□□□ -0.58
CLK3-215ENST00000564353 RNF115Q9Y4L5 304 aa11.42□□□□□ -0.58
CLK3-215ENST00000564353 CACNA1HO95180 2353 aa11.42□□□□□ -0.58
CLK3-215ENST00000564353 IGLV2-14P01704 120 aa11.42□□□□□ -0.58
CLK3-215ENST00000564353 ARR3P36575 388 aa11.42□□□□□ -0.58
CLK3-215ENST00000564353 TAGLN2P37802 199 aaKnown RBP11.42□□□□□ -0.58
CLK3-215ENST00000564353 RPL23AP62750 156 aaKnown RBP11.42□□□□□ -0.58
CLK3-215ENST00000564353 SRPXP78539 464 aa11.42□□□□□ -0.58
CLK3-215ENST00000564353 HLA-DRB3P79483 266 aa11.42□□□□□ -0.58
CLK3-215ENST00000564353 PDZD11Q5EBL8 140 aa11.42□□□□□ -0.58
CLK3-215ENST00000564353 ZNF573Q86YE8 665 aa11.42□□□□□ -0.58
CLK3-215ENST00000564353 OR10V1Q8NGI7 309 aa11.42□□□□□ -0.58
CLK3-215ENST00000564353 IGHV3-43A0A0B4J1X8 118 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 DEFB108AA8MXU0 73 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 RAMP3O60896 148 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 MT-ND4LP03901 98 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 IGHV3-43DP0DP04 118 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 MDKP21741 143 aaPredicted RBP11.41□□□□□ -0.58
CLK3-215ENST00000564353 ZNF816Q0VGE8 651 aaPredicted RBP11.41□□□□□ -0.58
CLK3-215ENST00000564353 USF2Q15853 346 aaPredicted RBP11.41□□□□□ -0.58
CLK3-215ENST00000564353 FAM185AQ8N0U4 392 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 RFESDQ8TAC1 157 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 OR51I2Q9H344 312 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 ZNF665Q9H7R5 613 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 ICE1Q9Y2F5 2266 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 C5orf52A6NGY3 159 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 H0Y980 276 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 M0R296 226 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 YIF1AO95070 293 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 KRASP01116 189 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 IGKV1-5P01602 117 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 CD55P08174 381 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 SP9P0CG40 484 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 PMELP40967 661 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 UBE2KP61086 200 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 TESK1Q15569 626 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 HES3Q5TGS1 186 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 S100PBPQ96BU1 408 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 OPN3Q9H1Y3 402 aaPredicted RBP11.41□□□□□ -0.58
CLK3-215ENST00000564353 PSPNO60542 156 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 RAB11AP62491 216 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 DLK1P80370 383 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 ICAM4Q14773 271 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 ZNF383Q8NA42 475 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 Q8NFD4 153 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 OR5D13Q8NGL4 314 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 OR1J1Q8NGS3 322 aa11.41□□□□□ -0.58
CLK3-215ENST00000564353 MRPS18CQ9Y3D5 142 aaKnown RBP11.41□□□□□ -0.58
CLK3-215ENST00000564353 DOCK11Q5JSL3 2073 aa11.4□□□□□ -0.58
CLK3-215ENST00000564353 BTBD17A6NE02 478 aa11.4□□□□□ -0.58
CLK3-215ENST00000564353 UBE2CO00762 179 aa11.4□□□□□ -0.58
CLK3-215ENST00000564353 CD59P13987 128 aa11.4□□□□□ -0.58
CLK3-215ENST00000564353 BMP5P22003 454 aa11.4□□□□□ -0.58
CLK3-215ENST00000564353 MPV17P39210 176 aa11.4□□□□□ -0.58
CLK3-215ENST00000564353 RAB5CP51148 216 aa11.4□□□□□ -0.58
CLK3-215ENST00000564353 AESQ08117 197 aa11.4□□□□□ -0.58
CLK3-215ENST00000564353 FBXW9Q5XUX1 488 aa11.4□□□□□ -0.58
CLK3-215ENST00000564353 ZNF429Q86V71 674 aa11.4□□□□□ -0.58
CLK3-215ENST00000564353 H1FOOQ8IZA3 346 aaPredicted RBP11.4□□□□□ -0.58
CLK3-215ENST00000564353 OR1L1Q8NH94 360 aa11.4□□□□□ -0.58
CLK3-215ENST00000564353 SLC25A40Q8TBP6 338 aa11.4□□□□□ -0.58
CLK3-215ENST00000564353 ATP5SQ99766 215 aa11.4□□□□□ -0.58
CLK3-215ENST00000564353 PLK3Q9H4B4 646 aa11.4□□□□□ -0.58
CLK3-215ENST00000564353 OBP2BQ9NPH6 170 aa11.4□□□□□ -0.58
CLK3-215ENST00000564353 RPRMQ9NS64 109 aa11.4□□□□□ -0.58
CLK3-215ENST00000564353 WSB1Q9Y6I7 421 aa11.4□□□□□ -0.58
CLK3-215ENST00000564353 ATMQ13315 3056 aa11.4□□□□□ -0.59
CLK3-215ENST00000564353 TGIF2-C20orf24A0A0A6YYL0 155 aa11.4□□□□□ -0.59
CLK3-215ENST00000564353 CDX4O14627 284 aaPredicted RBP11.4□□□□□ -0.59
CLK3-215ENST00000564353 CXCL1P09341 107 aa11.4□□□□□ -0.59
CLK3-215ENST00000564353 UCP2P55851 309 aa11.4□□□□□ -0.59
CLK3-215ENST00000564353 Q6P435 159 aa11.4□□□□□ -0.59
CLK3-215ENST00000564353 OR52L2PQ8NGH6 319 aa11.4□□□□□ -0.59
CLK3-215ENST00000564353 TCEAL7Q9BRU2 100 aa11.4□□□□□ -0.59
CLK3-215ENST00000564353 GGACTQ9BVM4 153 aa11.4□□□□□ -0.59
CLK3-215ENST00000564353 MSL2Q9HCI7 577 aa11.4□□□□□ -0.59
CLK3-215ENST00000564353 PSENENQ9NZ42 101 aa11.4□□□□□ -0.59
CLK3-215ENST00000564353 CEP250Q9BV73 2442 aa11.39□□□□□ -0.59
CLK3-215ENST00000564353 TRGV5A0A0B4J1U4 118 aa11.39□□□□□ -0.59
CLK3-215ENST00000564353 SRP19P09132 144 aaKnown RBP11.39□□□□□ -0.59
CLK3-215ENST00000564353 G6PCP35575 357 aa11.39□□□□□ -0.59
CLK3-215ENST00000564353 PRAMEF6Q5VXH4 476 aa11.39□□□□□ -0.59
CLK3-215ENST00000564353 BCL2L2Q92843 193 aaPredicted RBP11.39□□□□□ -0.59
CLK3-215ENST00000564353 DCTN5Q9BTE1 182 aa11.39□□□□□ -0.59
CLK3-215ENST00000564353 UBE2L5PA0A1B0GUS4 154 aa11.39□□□□□ -0.59
CLK3-215ENST00000564353 SS18L1O75177 396 aaPredicted RBP11.39□□□□□ -0.59
CLK3-215ENST00000564353 SCAF4O95104 1147 aaKnown RBP11.39□□□□□ -0.59
CLK3-215ENST00000564353 LMO1P25800 156 aa11.39□□□□□ -0.59
CLK3-215ENST00000564353 OR3A1P47881 315 aa11.39□□□□□ -0.59
CLK3-215ENST00000564353 FABP6P51161 128 aa11.39□□□□□ -0.59
CLK3-215ENST00000564353 CCL11P51671 97 aa11.39□□□□□ -0.59
CLK3-215ENST00000564353 PPP1CBP62140 327 aa11.39□□□□□ -0.59
CLK3-215ENST00000564353 HMGN3Q15651 99 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms