RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 PSPNO60542 156 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 ADAP1O75689 374 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 RBP4P02753 201 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 FGF2P09038 288 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 RRASP10301 218 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 DAOP14920 347 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 RPL12P30050 165 aaKnown RBP6.3□□□□□ -1.4
VPS39-204ENST00000561818 SSTR2P30874 369 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 ATP5IP56385 69 aaPredicted RBP6.3□□□□□ -1.4
VPS39-204ENST00000561818 ERVK-16P61578 105 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 BLOC1S1P78537 153 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 RAB32Q13637 225 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 C2orf68Q2NKX9 166 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 HFEQ30201 348 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 ALKBH6Q3KRA9 238 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 NMSQ5H8A3 153 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 DHRS7BQ6IAN0 325 aaPredicted RBP6.3□□□□□ -1.4
VPS39-204ENST00000561818 BRICD5Q6PL45 260 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 MEX3BQ6ZN04 569 aaKnown RBP6.3□□□□□ -1.4
VPS39-204ENST00000561818 COMMD1Q8N668 190 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 OR4D5Q8NGN0 318 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 PLPPR1Q8TBJ4 325 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 NEU4Q8WWR8 484 aaPredicted RBP6.3□□□□□ -1.4
VPS39-204ENST00000561818 TNFRSF14Q92956 283 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 ARL11Q969Q4 196 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 GNPNAT1Q96EK6 184 aaPredicted RBP6.3□□□□□ -1.4
VPS39-204ENST00000561818 TP53RKQ96S44 253 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 RAB1BQ9H0U4 201 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 OR2S2Q9NQN1 319 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 CRIM1Q9NZV1 1036 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 IL36RNQ9UBH0 155 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 RP1L1Q8IWN7 2480 aaPredicted RBP6.3□□□□□ -1.4
VPS39-204ENST00000561818 IGKV1D-17A0A075B6S4 117 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 PPIAL4EA0A075B759 164 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 IGKV1-6A0A0C4DH72 117 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 KBTBD11-OT1A0A1B0GTJ5 212 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 DPRXA6NFQ7 191 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 PPIAL4DF5H284 164 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 TRIM77I1YAP6 450 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 HSD17B6O14756 317 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 RAB29O14966 203 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 MBPP02686 304 aaPredicted RBP6.29□□□□□ -1.4
VPS39-204ENST00000561818 SEC11BP0C7V7 166 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 PPIAL4FP0DN26 164 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 IL3RAP26951 378 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 GPR12P47775 334 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 RAB2AP61019 212 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 AESQ08117 197 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 PDCD1Q15116 288 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 C4orf17Q53FE4 359 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 DPPA3Q6W0C5 159 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 ZNF788Q6ZQV5 615 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 HSD17B13Q7Z5P4 300 aaPredicted RBP6.29□□□□□ -1.4
VPS39-204ENST00000561818 RTN4RL2Q86UN3 420 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 MRPL41Q8IXM3 137 aaKnown RBP6.29□□□□□ -1.4
VPS39-204ENST00000561818 SELENOHQ8IZQ5 122 aaKnown RBP6.29□□□□□ -1.4
VPS39-204ENST00000561818 LFNGQ8NES3 379 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 OR51H1Q8NH63 302 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 OR1S1Q8NH92 325 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 FAM122AQ96E09 287 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 PLPPR2Q96GM1 343 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 TIMD4Q96H15 378 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 COQ2Q96H96 371 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 S1PR3Q99500 378 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 OR2D2Q9H210 308 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 LIME1Q9H400 295 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 LYRM2Q9NU23 88 aaPredicted RBP6.29□□□□□ -1.4
VPS39-204ENST00000561818 TMEM106BQ9NUM4 274 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 CALYQ9NYX4 217 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 CLN8Q9UBY8 286 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 SH3BGRL2Q9UJC5 107 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 FZR1Q9UM11 496 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 STRAPQ9Y3F4 350 aaKnown RBP6.29□□□□□ -1.4
VPS39-204ENST00000561818 PPIAL4AQ9Y536 164 aa6.29□□□□□ -1.4
VPS39-204ENST00000561818 POLEQ07864 2286 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.28□□□□□ -1.4
VPS39-204ENST00000561818 RAB19A4D1S5 217 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 BTBD17A6NE02 478 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 SHISA9B4DS77 424 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 TMEM178BH3BS89 294 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 TXNL1O43396 289 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 NDUFB3O43676 98 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 ZG16O60844 167 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 PITX3O75364 302 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 WISP2O76076 250 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 SPDEFO95238 335 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 CLDN14O95500 239 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 SCGB1D2O95969 90 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 HPRT1P00492 218 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 THBDP07204 575 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 OR8U9P0C7N5 309 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 THBS3P49746 956 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 EDDM3BP56851 147 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 ID3Q02535 119 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 ATP6V1FQ16864 119 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 ZNF672Q499Z4 452 aaPredicted RBP6.28□□□□□ -1.4
VPS39-204ENST00000561818 Q5BKY6 102 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 ALKBH2Q6NS38 261 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 IL34Q6ZMJ4 242 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 C20orf204Q6ZNR8 217 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms