RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 RAB6AP20340 208 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 VEGFCP49767 419 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 DYNLT3P51808 116 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 PRRX1P54821 245 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 RAG2P55895 527 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 TMEM50BP56557 158 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 LOXL3P58215 753 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 SSBP1Q04837 148 aaKnown RBP7.55□□□□□ -1.2
LDLR-211ENST00000560173 FOXL1Q12952 345 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 TMEM30BQ3MIR4 351 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 PLA1AQ53H76 456 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 AWAT1Q58HT5 328 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 TMEM69Q5SWH9 247 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 TPTE2P1Q5T6R2 138 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 C12orf54Q6X4T0 127 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 Q6ZPA2 131 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 ZNF554Q86TJ5 538 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 OR56B1Q8NGI3 324 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 OR52M1Q8NGK5 317 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 OR1L1Q8NH94 360 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 ENKURQ8TC29 256 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 CREB3L1Q96BA8 519 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 ARHGAP5-AS1Q96IT6 56 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 MMP28Q9H239 520 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 TAF9BQ9HBM6 251 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 RAB9BQ9NP90 201 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 PLEKHJ1Q9NW61 149 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 RHBDL2Q9NX52 303 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 GFOD1Q9NXC2 390 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 TAS2R8Q9NYW2 309 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 COPZ2Q9P299 210 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 AK3Q9UIJ7 227 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 PSG11Q9UQ72 335 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 HILPDAQ9Y5L2 63 aa7.55□□□□□ -1.2
LDLR-211ENST00000560173 TRBV6-6A0A0A6YYG2 114 aa7.54□□□□□ -1.2
LDLR-211ENST00000560173 GABARAPH6UMI1 98 aa7.54□□□□□ -1.2
LDLR-211ENST00000560173 SDCBPO00560 298 aaPredicted RBP7.54□□□□□ -1.2
LDLR-211ENST00000560173 XRCC3O43542 346 aa7.54□□□□□ -1.2
LDLR-211ENST00000560173 CRYBA1P05813 215 aa7.54□□□□□ -1.2
LDLR-211ENST00000560173 CEACAM3P40198 252 aa7.54□□□□□ -1.2
LDLR-211ENST00000560173 GNG10P50151 68 aa7.54□□□□□ -1.2
LDLR-211ENST00000560173 RAB13P51153 203 aa7.54□□□□□ -1.2
LDLR-211ENST00000560173 DYRK1AQ13627 763 aa7.54□□□□□ -1.2
LDLR-211ENST00000560173 HMGN3Q15651 99 aa7.54□□□□□ -1.2
LDLR-211ENST00000560173 LY6EQ16553 131 aa7.54□□□□□ -1.2
LDLR-211ENST00000560173 BAK1Q16611 211 aa7.54□□□□□ -1.2
LDLR-211ENST00000560173 MOGAT2Q3SYC2 334 aa7.54□□□□□ -1.2
LDLR-211ENST00000560173 PLAC9Q5JTB6 97 aa7.54□□□□□ -1.2
LDLR-211ENST00000560173 ZNF57Q68EA5 555 aaPredicted RBP7.54□□□□□ -1.2
LDLR-211ENST00000560173 DHRS7BQ6IAN0 325 aaPredicted RBP7.54□□□□□ -1.2
LDLR-211ENST00000560173 FAM53AQ6NSI3 398 aaPredicted RBP7.54□□□□□ -1.2
LDLR-211ENST00000560173 ZNF880Q6PDB4 577 aa7.54□□□□□ -1.2
LDLR-211ENST00000560173 LIAT1Q6ZQX7 453 aa7.54□□□□□ -1.2
LDLR-211ENST00000560173 MOB1BQ7L9L4 216 aa7.54□□□□□ -1.2
LDLR-211ENST00000560173 C8orf31Q8N9H6 132 aa7.54□□□□□ -1.2
LDLR-211ENST00000560173 OR5H6Q8NGV6 325 aa7.54□□□□□ -1.2
LDLR-211ENST00000560173 SMIM4Q8WVI0 70 aa7.54□□□□□ -1.2
LDLR-211ENST00000560173 FCAMRQ8WWV6 532 aa7.54□□□□□ -1.2
LDLR-211ENST00000560173 HDHD3Q9BSH5 251 aaPredicted RBP7.54□□□□□ -1.2
LDLR-211ENST00000560173 THAP7Q9BT49 309 aaPredicted RBP7.54□□□□□ -1.2
LDLR-211ENST00000560173 PECRQ9BY49 303 aa7.54□□□□□ -1.2
LDLR-211ENST00000560173 KCNIP1Q9NZI2 227 aa7.54□□□□□ -1.2
LDLR-211ENST00000560173 TCF19Q9Y242 345 aa7.54□□□□□ -1.2
LDLR-211ENST00000560173 AMMECR1Q9Y4X0 333 aaPredicted RBP7.54□□□□□ -1.2
LDLR-211ENST00000560173 MMP24Q9Y5R2 645 aa7.54□□□□□ -1.2
LDLR-211ENST00000560173 MGAM2Q2M2H8 2515 aa7.54□□□□□ -1.2
LDLR-211ENST00000560173 IGHV3-43A0A0B4J1X8 118 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 A0A1B0GVG6 124 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 FAM240BA0A1B0GVZ2 78 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 A6NDX4 124 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 NAP1L6A6NFF2 107 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 OOSP1A8MZH6 123 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 RAB27BO00194 218 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 SULT1C2O00338 296 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 LYRM1O43325 122 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 CHST1O43916 411 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 IGHV3-43DP0DP04 118 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 MDKP21741 143 aaPredicted RBP7.53□□□□□ -1.2
LDLR-211ENST00000560173 FAUP35544 74 aaKnown RBP7.53□□□□□ -1.2
LDLR-211ENST00000560173 BCAP31P51572 246 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 MADCAM1Q13477 382 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 ARL6IP1Q15041 203 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 Q3ZCU0 254 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 OLFML2AQ68BL7 652 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 PLET1Q6UQ28 207 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 CCBE1Q6UXH8 406 aaPredicted RBP7.53□□□□□ -1.2
LDLR-211ENST00000560173 Q6ZTK2 550 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 C5orf24Q7Z6I8 188 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 PRR18Q8N4B5 295 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 TOMM5Q8N4H5 51 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 LINC00311Q8N616 119 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 ZNF439Q8NDP4 499 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 OR10R2Q8NGX6 335 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 OR4F5Q8NH21 305 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 RAB3CQ96E17 227 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 RIMS4Q9H426 269 aaPredicted RBP7.53□□□□□ -1.2
LDLR-211ENST00000560173 CHMP1AQ9HD42 196 aaPredicted RBP7.53□□□□□ -1.2
LDLR-211ENST00000560173 C12orf4Q9NQ89 552 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 GNG12Q9UBI6 72 aa7.53□□□□□ -1.2
LDLR-211ENST00000560173 TBC1D24Q9ULP9 559 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms