RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 SULT1A1P50225 295 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 LIM2P55344 173 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 NDUFA6P56556 154 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 HIST1H2BDP58876 126 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 HIST1H2BCP62807 126 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 RANP62826 216 aaKnown RBP2.08□□□□□ -2.08
VPS13C-208ENST00000559119 FKBP1AP62942 108 aaKnown RBP2.08□□□□□ -2.08
VPS13C-208ENST00000559119 SLC35A1P78382 337 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 ZP4Q12836 540 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 PRDX4Q13162 271 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 GPM6BQ13491 265 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 GINS1Q14691 196 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 HIST2H2BEQ16778 126 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 ATP6V1FQ16864 119 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 DEFB116Q30KQ4 102 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 AKIRIN2Q53H80 203 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 KHDC3LQ587J8 217 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.08□□□□□ -2.08
VPS13C-208ENST00000559119 COL5A1-AS1Q5SY13 56 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 OR2G6Q5TZ20 316 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 NCR3LG1Q68D85 454 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 OR8G2PQ6IF36 304 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 TNFAIP8L2Q6P589 184 aaPredicted RBP2.08□□□□□ -2.08
VPS13C-208ENST00000559119 LEG1Q6P5S2 330 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 CBLN3Q6UW01 205 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 FBXW12Q6X9E4 464 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 STAC2Q6ZMT1 411 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 ZNF621Q6ZSS3 439 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 SLC25A26Q70HW3 274 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 BHLHA15Q7RTS1 189 aaPredicted RBP2.08□□□□□ -2.08
VPS13C-208ENST00000559119 TCF24Q7RTU0 167 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 ERASQ7Z444 233 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 SCD5Q86SK9 330 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 TMEM183AQ8IXX5 376 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 PRSS58Q8IYP2 241 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 C6orf223Q8N319 242 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 FAM24BQ8N5W8 94 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 NPWQ8N729 165 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 ACOT4Q8N9L9 421 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 INO80EQ8NBZ0 244 aaPredicted RBP2.08□□□□□ -2.08
VPS13C-208ENST00000559119 OR2M7Q8NG81 312 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 OR5AU1Q8NGC0 362 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 OR4E2Q8NGC2 313 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 OR51S1Q8NGJ8 323 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 OR10R2Q8NGX6 335 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 OR4C6Q8NH72 309 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 OR2V1Q8NHB1 315 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 NUBPLQ8TB37 319 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 CD200R1Q8TD46 325 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 ORAOV1Q8WV07 137 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 EEF1AKMT1Q8WVE0 214 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 SPRYD4Q8WW59 207 aaPredicted RBP2.08□□□□□ -2.08
VPS13C-208ENST00000559119 TMEM158Q8WZ71 300 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 HIST1H2BHQ93079 126 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 MUCL1Q96DR8 90 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 S100A16Q96FQ6 103 aaKnown RBP2.08□□□□□ -2.08
VPS13C-208ENST00000559119 IMP4Q96G21 291 aaKnown RBP2.08□□□□□ -2.08
VPS13C-208ENST00000559119 LINC00477Q96M19 166 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 PACRGQ96M98 296 aaPredicted RBP2.08□□□□□ -2.08
VPS13C-208ENST00000559119 ZNF75AQ96N20 296 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 ZFP3Q96NJ6 502 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 TGM7Q96PF1 710 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 OR2M4Q96R27 311 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 ZNF607Q96SK3 696 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 HIST1H2BNQ99877 126 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 HIST1H2BMQ99879 126 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 MICU1Q9BPX6 476 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 SLC25A21Q9BQT8 299 aaPredicted RBP2.08□□□□□ -2.08
VPS13C-208ENST00000559119 ALG12Q9BV10 488 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 ANGPTL4Q9BY76 406 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 NMES1Q9C002 83 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 OR8D2Q9GZM6 311 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 SLC25A31Q9H0C2 315 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 PRO1933Q9H354 126 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 SRMSQ9H3Y6 488 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 FBXO44Q9H4M3 255 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 RGCCQ9H4X1 137 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 BEX1Q9HBH7 125 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 TMEM242Q9NWH2 141 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 COMMD9Q9P000 198 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 MTFP1Q9UDX5 166 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 GNG8Q9UK08 70 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 IKZF2Q9UKS7 526 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 ANGPT4Q9Y264 503 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 HDGFL3Q9Y3E1 203 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 OARD1Q9Y530 152 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 SNX10Q9Y5X0 201 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 COL4A1P02462 1669 aa2.08□□□□□ -2.08
VPS13C-208ENST00000559119 TNKS1BP1Q9C0C2 1729 aaKnown RBP2.08□□□□□ -2.08
VPS13C-208ENST00000559119 ANKRD31Q8N7Z5 1873 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 LTBP4Q8N2S1 1624 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 TRBV24-1A0A075B6N3 115 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 PPIAL4EA0A075B759 164 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 KCNE1BA0A087WTH5 132 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 TRAV39A0A0B4J263 110 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 A0A0B4J2A0 478 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 TRBV11-1A0A0K0K1C0 115 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 C20orf202A1L168 122 aa2.07□□□□□ -2.08
VPS13C-208ENST00000559119 MBLAC1A4D2B0 266 aaPredicted RBP2.07□□□□□ -2.08
VPS13C-208ENST00000559119 FBLL1A6NHQ2 334 aaKnown RBP2.07□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms