RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 RIPPLY2Q5TAB7 128 aa10.36□□□□□ -0.75
CCDC88C-211ENST00000556726 GALNT14Q96FL9 552 aa10.36□□□□□ -0.75
CCDC88C-211ENST00000556726 ATP5SQ99766 215 aa10.36□□□□□ -0.75
CCDC88C-211ENST00000556726 ZNF703Q9H7S9 590 aaPredicted RBP10.36□□□□□ -0.75
CCDC88C-211ENST00000556726 ENY2Q9NPA8 101 aa10.36□□□□□ -0.75
CCDC88C-211ENST00000556726 LIN7CQ9NUP9 197 aaKnown RBP10.36□□□□□ -0.75
CCDC88C-211ENST00000556726 TMEM100Q9NV29 134 aa10.36□□□□□ -0.75
CCDC88C-211ENST00000556726 TECTAO75443 2155 aa10.36□□□□□ -0.75
CCDC88C-211ENST00000556726 A0A0G2JRQ6 117 aa10.35□□□□□ -0.75
CCDC88C-211ENST00000556726 NEURL1O76050 574 aa10.35□□□□□ -0.75
CCDC88C-211ENST00000556726 CD55P08174 381 aa10.35□□□□□ -0.75
CCDC88C-211ENST00000556726 RAB4BP61018 213 aa10.35□□□□□ -0.75
CCDC88C-211ENST00000556726 VKORC1L1Q8N0U8 176 aa10.35□□□□□ -0.75
CCDC88C-211ENST00000556726 DEFB124Q8NES8 71 aa10.35□□□□□ -0.75
CCDC88C-211ENST00000556726 OR10P1Q8NGE3 313 aa10.35□□□□□ -0.75
CCDC88C-211ENST00000556726 TUBD1Q9UJT1 453 aa10.35□□□□□ -0.75
CCDC88C-211ENST00000556726 ZFP36L1Q07352 338 aaKnown RBP10.35□□□□□ -0.75
CCDC88C-211ENST00000556726 SCCPDHQ8NBX0 429 aa10.35□□□□□ -0.75
CCDC88C-211ENST00000556726 SSX3Q99909 188 aa10.35□□□□□ -0.75
CCDC88C-211ENST00000556726 VSIRQ9H7M9 311 aa10.35□□□□□ -0.75
CCDC88C-211ENST00000556726 H7BYZ3 331 aa10.35□□□□□ -0.75
CCDC88C-211ENST00000556726 M0R1B8 84 aa10.35□□□□□ -0.75
CCDC88C-211ENST00000556726 M0R1X1 148 aa10.35□□□□□ -0.75
CCDC88C-211ENST00000556726 RRP8O43159 456 aaKnown RBP10.35□□□□□ -0.75
CCDC88C-211ENST00000556726 SRSF4Q08170 494 aaKnown RBP10.35□□□□□ -0.75
CCDC88C-211ENST00000556726 SRSF6Q13247 344 aaKnown RBP10.35□□□□□ -0.75
CCDC88C-211ENST00000556726 HABP2Q14520 560 aaPredicted RBP10.35□□□□□ -0.75
CCDC88C-211ENST00000556726 FBXW9Q5XUX1 488 aa10.35□□□□□ -0.75
CCDC88C-211ENST00000556726 OR4A16Q8NH70 328 aa10.35□□□□□ -0.75
CCDC88C-211ENST00000556726 WFIKKN1Q96NZ8 548 aa10.35□□□□□ -0.75
CCDC88C-211ENST00000556726 OR4C12Q96R67 309 aa10.35□□□□□ -0.75
CCDC88C-211ENST00000556726 REPIN1Q9BWE0 567 aaKnown RBP10.35□□□□□ -0.75
CCDC88C-211ENST00000556726 ARV1Q9H2C2 271 aa10.35□□□□□ -0.75
CCDC88C-211ENST00000556726 MED12LQ86YW9 2145 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 COLCA2A8K830 154 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 SPINK4O60575 86 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 ACTL6BO94805 426 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 PSMB3P49720 205 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 ERVK-16P61578 105 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 FFAR4Q5NUL3 377 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 TOLLIPQ9H0E2 274 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 PATZ1Q9HBE1 687 aaKnown RBP10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 LYRM2Q9NU23 88 aaPredicted RBP10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 AQP7O14520 342 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 DNPH1O43598 174 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 ZNF737O75373 536 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 HAND1O96004 215 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 SSTR5P35346 364 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 GPR12P47775 334 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 GNG10P50151 68 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 OR8B8Q15620 311 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 C1orf87Q8N0U7 546 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 SNIP1Q8TAD8 396 aaKnown RBP10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 TIMM8BQ9Y5J9 83 aaPredicted RBP10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 J3QT63 122 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 AP4M1O00189 453 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 PHOX2AO14813 284 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 LHX2P50458 406 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 HERPUD1Q15011 391 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 RNPS1Q15287 305 aaKnown RBP10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 NCR3LG1Q68D85 454 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 ZNF610Q8N9Z0 462 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 PLPPR1Q8TBJ4 325 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 C18orf12Q96KH6 178 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 FAM210BQ96KR6 192 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 TECTBQ96PL2 329 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 TP53TG5Q9Y2B4 290 aa10.34□□□□□ -0.75
CCDC88C-211ENST00000556726 OR5B21A6NL26 309 aa10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 TMEM50AO95807 157 aa10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 ACAA1P09110 424 aaPredicted RBP10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 MMP7P09237 267 aaPredicted RBP10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 SLC25A6P12236 298 aa10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 FGFRL1Q8N441 504 aa10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 LRRC29Q8WV35 223 aa10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 ZDHHC16Q969W1 377 aa10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 C1QTNF5Q9BXJ0 243 aa10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 PRDM14Q9GZV8 571 aa10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 ZDHHC8Q9ULC8 765 aa10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 TRAV24A0A0B4J272 114 aa10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 SPINT2O43291 252 aa10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 CLDN18P56856 261 aa10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 FAM201AQ5SY85 155 aa10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 SSMEM1Q8WWF3 244 aa10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 RAB40CQ96S21 281 aa10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 GPR61Q9BZJ8 451 aa10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 RIMS4Q9H426 269 aaPredicted RBP10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 GAR1Q9NY12 217 aaKnown RBP10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 MPC1Q9Y5U8 109 aa10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 NTN3O00634 580 aaPredicted RBP10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 PITX3O75364 302 aa10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 CD5P06127 495 aa10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 EIF2S3P41091 472 aaKnown RBP10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 WNT5AP41221 380 aa10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 GLIPR1P48060 266 aa10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 IL24Q13007 206 aa10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 COMMD1Q8N668 190 aa10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 TMEM9BQ9NQ34 198 aa10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 INTS1Q8N201 2190 aaKnown RBP10.33□□□□□ -0.76
CCDC88C-211ENST00000556726 TMEM30CPA0ZSE6 113 aa10.32□□□□□ -0.76
CCDC88C-211ENST00000556726 B4E171 279 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms