RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 SPIN4Q56A73 249 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 Q5BKY6 102 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 PDZD11Q5EBL8 140 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 CPTPQ5TA50 214 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 PLET1Q6UQ28 207 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 SSX7Q7RTT5 188 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 OR2W3Q7Z3T1 314 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 FAM19A1Q7Z5A9 133 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 GALNT10Q86SR1 603 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 NIT1Q86X76 327 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 LRRC25Q8N386 305 aaPredicted RBP1.48□□□□□ -2.17
VRK1-202ENST00000553683 SMIM20Q8N5G0 67 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 ZNF283Q8N7M2 679 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 SPANXA2-OT1Q8N9U9 137 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 GPR32P1Q8NGA4 272 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 OR4P4Q8NGL7 312 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 LYPD6BQ8NI32 183 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 FAM45AQ8TCE6 357 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 PIFOQ8TCI5 191 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 GPR119Q8TDV5 335 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 Q8WTZ3 238 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 DNAJC9Q8WXX5 260 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 RAB8BQ92930 207 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 RERGQ96A58 199 aaPredicted RBP1.48□□□□□ -2.17
VRK1-202ENST00000553683 ISOC2Q96AB3 205 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 APH1AQ96BI3 265 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 SMIM19Q96E16 107 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 RBMXL1Q96E39 390 aaKnown RBP1.48□□□□□ -2.17
VRK1-202ENST00000553683 TBL1YQ9BQ87 522 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 VPS25Q9BRG1 176 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 MRPS26Q9BYN8 205 aaKnown RBP1.48□□□□□ -2.17
VRK1-202ENST00000553683 TBL1XR1Q9BZK7 514 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 NAA50Q9GZZ1 169 aaKnown RBP1.48□□□□□ -2.17
VRK1-202ENST00000553683 DEFB129Q9H1M3 183 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 DCSTAMPQ9H295 470 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 TXNIPQ9H3M7 391 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 DHX35Q9H5Z1 703 aaKnown RBP1.48□□□□□ -2.17
VRK1-202ENST00000553683 BEX1Q9HBH7 125 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 EXOSC4Q9NPD3 245 aaKnown RBP1.48□□□□□ -2.17
VRK1-202ENST00000553683 FGFR1OP2Q9NVK5 253 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 VPS29Q9UBQ0 182 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 ING4Q9UNL4 249 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 RPL26L1Q9UNX3 145 aaKnown RBP1.48□□□□□ -2.17
VRK1-202ENST00000553683 ZFP30Q9Y2G7 519 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 HSPB11Q9Y547 144 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 LMTK2Q8IWU2 1503 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 ARAP3Q8WWN8 1544 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 ABCA10Q8WWZ4 1543 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 LAMB4A4D0S4 1761 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 DOPEY1Q5JWR5 2465 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 A2MP01023 1474 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 RAPGEF2Q9Y4G8 1499 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 SHPRHQ149N8 1683 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 PRUNE2Q8WUY3 3088 aa1.48□□□□□ -2.17
VRK1-202ENST00000553683 CICQ96RK0 1608 aaPredicted RBP1.48□□□□□ -2.17
VRK1-202ENST00000553683 TMEM2Q9UHN6 1383 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 SCN4AP35499 1836 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 PTPRJQ12913 1337 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 MAGI3Q5TCQ9 1506 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 SDK2Q58EX2 2172 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 IGHV3OR16-8A0A075B7F1 116 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 A0A087WUJ7 227 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 A0A087WX48 190 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 A0A096LPI6 279 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 TGIF2-C20orf24A0A0A6YYL0 155 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 IGKV2-24A0A0C4DH68 120 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 TINCRA0A1B0GVN0 87 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 GMNCA6NCL1 334 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 TVP23AA6NH52 213 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 C5orf58C9J3I9 102 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 PPP5D1E7EU14 171 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 H3BSA7 217 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 MRASO14807 208 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 CCL25O15444 150 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 ERI3O43414 337 aaKnown RBP1.47□□□□□ -2.17
VRK1-202ENST00000553683 PDE6DO43924 150 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 S1PR2O95136 353 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 GADD45GO95257 159 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 PTTG1O95997 202 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 IFNA1P01562 189 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 RLN2P04090 185 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 TSPAN19P0C672 248 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 ZNF688P0C7X2 276 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 MPC1LP0DKB6 136 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 ESDP10768 282 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 MYL2P10916 166 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 UGT2B7P16662 529 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 RPS12P25398 132 aaKnown RBP1.47□□□□□ -2.17
VRK1-202ENST00000553683 STC1P52823 247 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 ZNF121P58317 390 aaPredicted RBP1.47□□□□□ -2.17
VRK1-202ENST00000553683 OR2B8PP59922 312 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 CKS1BP61024 79 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 UBE2MP61081 183 aaKnown RBP1.47□□□□□ -2.17
VRK1-202ENST00000553683 UBE2NP61088 152 aaKnown RBP1.47□□□□□ -2.17
VRK1-202ENST00000553683 RPL26P61254 145 aaKnown RBP1.47□□□□□ -2.17
VRK1-202ENST00000553683 STXBP1P61764 594 aaKnown RBP1.47□□□□□ -2.17
VRK1-202ENST00000553683 CDK5Q00535 292 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 RUNX1Q01196 453 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 MXD1Q05195 221 aa1.47□□□□□ -2.17
VRK1-202ENST00000553683 OR2F1Q13607 317 aa1.47□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms