RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	TRAM1	Q15629	374 aa		6.11	□□□□□ -1.43
SNHG1-223	ENST00000545440	LTC4S	Q16873	150 aa		6.11	□□□□□ -1.43
SNHG1-223	ENST00000545440	TMEM95	Q3KNT9	176 aa		6.11	□□□□□ -1.43
SNHG1-223	ENST00000545440	ACSM3	Q53FZ2	586 aa		6.11	□□□□□ -1.43
SNHG1-223	ENST00000545440	HSD17B12	Q53GQ0	312 aa		6.11	□□□□□ -1.43
SNHG1-223	ENST00000545440	RBM48	Q5RL73	367 aa	Known RBP	6.11	□□□□□ -1.43
SNHG1-223	ENST00000545440	C6orf183	Q5T699	404 aa		6.11	□□□□□ -1.43
SNHG1-223	ENST00000545440	GLT8D1	Q68CQ7	371 aa		6.11	□□□□□ -1.43
SNHG1-223	ENST00000545440	UNQ9370/PRO34162	Q6UXP9	181 aa		6.11	□□□□□ -1.43
SNHG1-223	ENST00000545440	ZNF554	Q86TJ5	538 aa		6.11	□□□□□ -1.43
SNHG1-223	ENST00000545440	NDUFA11	Q86Y39	141 aa		6.11	□□□□□ -1.43
SNHG1-223	ENST00000545440	LINC00311	Q8N616	119 aa		6.11	□□□□□ -1.43
SNHG1-223	ENST00000545440	C11orf44	Q8N8P7	122 aa		6.11	□□□□□ -1.43
SNHG1-223	ENST00000545440	TMEM104	Q8NE00	496 aa		6.11	□□□□□ -1.43
SNHG1-223	ENST00000545440	OR56B4	Q8NH76	319 aa		6.11	□□□□□ -1.43
SNHG1-223	ENST00000545440	RFESD	Q8TAC1	157 aa		6.11	□□□□□ -1.43
SNHG1-223	ENST00000545440	SGCD	Q92629	289 aa		6.11	□□□□□ -1.43
SNHG1-223	ENST00000545440	LEAP2	Q969E1	77 aa		6.11	□□□□□ -1.43
SNHG1-223	ENST00000545440	ARL11	Q969Q4	196 aa		6.11	□□□□□ -1.43
SNHG1-223	ENST00000545440	C20orf173	Q96LM9	149 aa		6.11	□□□□□ -1.43
SNHG1-223	ENST00000545440	NEU1	Q99519	415 aa		6.11	□□□□□ -1.43
SNHG1-223	ENST00000545440	ARPC5L	Q9BPX5	153 aa		6.11	□□□□□ -1.43
SNHG1-223	ENST00000545440	TMED9	Q9BVK6	235 aa		6.11	□□□□□ -1.43
SNHG1-223	ENST00000545440	SELENOI	Q9C0D9	397 aa		6.11	□□□□□ -1.43
SNHG1-223	ENST00000545440	BANF2	Q9H503	90 aa		6.11	□□□□□ -1.43
SNHG1-223	ENST00000545440	TRAV39	A0A0B4J263	110 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	C12orf77	C9JDV5	145 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	SPINT2	O43291	252 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	FGF16	O43320	207 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	TXNL1	O43396	289 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	KCNAB3	O43448	404 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	PDCD6	O75340	191 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	IGHV3-7	P01780	117 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	SNRNP70	P08621	437 aa	Known RBP	6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	UCHL1	P09936	223 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	CD28	P10747	220 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	CD37	P11049	281 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	SRM	P19623	302 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	FUT3	P21217	361 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	CRHBP	P24387	322 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	IL3RA	P26951	378 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	PPIF	P30405	207 aa	Known RBP	6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	ZNF137P	P52743	207 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	BLOC1S1	P78537	153 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	DEFA6	Q01524	100 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	MLLT11	Q13015	90 aa	Predicted RBP	6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	TPBG	Q13641	420 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	PMS2P11	Q13670	270 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	TBCE	Q15813	527 aa	Predicted RBP	6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	CD300E	Q496F6	205 aa	Predicted RBP	6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	ABCA11P	Q4W5N1	156 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	C1orf100	Q5SVJ3	147 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	FAM27D1	Q5T7N8	215 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	SYT6	Q5T7P8	510 aa	Predicted RBP	6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	LIPK	Q5VXJ0	399 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	SIGIRR	Q6IA17	410 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	IZUMO2	Q6UXV1	221 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	PRSS48	Q7RTY5	328 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	LRRTM1	Q86UE6	522 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	IZUMO1	Q8IYV9	350 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	DRAM1	Q8N682	238 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	OR4F17	Q8NGA8	305 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	OR6M1	Q8NGM8	313 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	FAM110D	Q8TAY7	271 aa	Predicted RBP	6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	CCDC107	Q8WV48	283 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	FAM46B	Q96A09	425 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	OR4F4	Q96R69	305 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	TMEM59	Q9BXS4	323 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	ISYNA1	Q9NPH2	558 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	TRAPPC2L	Q9UL33	140 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	BLOC1S6	Q9UL45	172 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	PEX16	Q9Y5Y5	336 aa		6.1	□□□□□ -1.43
SNHG1-223	ENST00000545440	IGHV1-3	A0A0C4DH29	117 aa		6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	ERICH4	A6NGS2	130 aa		6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	CCRL2	O00421	344 aa		6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	SLC22A1	O15245	554 aa		6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	ARL6IP5	O75915	188 aa		6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	IGKV1D-33	P01593	117 aa		6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	IGKV1-33	P01594	117 aa		6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	HSMCR30	P0CW71	290 aa		6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	TMEM11	P17152	192 aa		6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	CHAT	P28329	748 aa		6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	HTR2C	P28335	458 aa		6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	RPS27A	P62979	156 aa	Known RBP	6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	EMX1	Q04741	257 aa	Predicted RBP	6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	UNC119	Q13432	240 aa		6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	EBI3	Q14213	229 aa		6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	DIAPH2-AS1	Q14236	149 aa		6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	HES1	Q14469	280 aa		6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	BEAN1	Q3B7T3	259 aa		6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	PDLIM3	Q53GG5	364 aa	Predicted RBP	6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	SLC25A48	Q6ZT89	311 aa	Known RBP	6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	CEACAM19	Q7Z692	300 aa		6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	C5orf56	Q8N8D9	126 aa		6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	ZNF439	Q8NDP4	499 aa		6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	OR5AU1	Q8NGC0	362 aa		6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	OR4X2	Q8NGF9	303 aa		6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	OR4K15	Q8NH41	348 aa		6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	KCNG3	Q8TAE7	436 aa		6.09	□□□□□ -1.43
SNHG1-223	ENST00000545440	MRPL30	Q8TCC3	161 aa	Known RBP	6.09	□□□□□ -1.43

Retrieved 100 of 20,778 RNA–protein pairs in 40 ms