RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 SRSF3P84103 164 aaKnown RBP8.32□□□□□ -1.08
SS18-205ENST00000542420 GCNT2Q8N0V5 402 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 GALMQ96C23 342 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 GGACTQ9BVM4 153 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 HRH4Q9H3N8 390 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 RAB9BQ9NP90 201 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 RNF150Q9ULK6 438 aa8.32□□□□□ -1.08
SS18-205ENST00000542420 A0A1W2PR80 420 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 FAM157AC9JC47 383 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 SIRPB1O00241 398 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 TIMM8AO60220 97 aaPredicted RBP8.31□□□□□ -1.08
SS18-205ENST00000542420 TSPAN15O95858 294 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 IGLV2-14P01704 120 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 RPS23P62266 143 aaKnown RBP8.31□□□□□ -1.08
SS18-205ENST00000542420 HTD2P86397 168 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 CATR1Q13166 79 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 C1orf185Q5T7R7 199 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 CDPF1Q6NVV7 123 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 CXorf67Q86X51 503 aaPredicted RBP8.31□□□□□ -1.08
SS18-205ENST00000542420 BOLLQ8N9W6 283 aaKnown RBP8.31□□□□□ -1.08
SS18-205ENST00000542420 PPP1R35Q8TAP8 253 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 TAAR6Q96RI8 345 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 SFXN3Q9BWM7 321 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 OR51B6Q9H340 312 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 C19orf12Q9NSK7 152 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 PLA2G2EQ9NZK7 142 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 IGHV1-18A0A0C4DH31 117 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 IGSF23A1L1A6 192 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 KIAA1324LA8MWY0 1029 aaPredicted RBP8.31□□□□□ -1.08
SS18-205ENST00000542420 HSPB6O14558 160 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 CAMLGP49069 296 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 PPT1P50897 306 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 EIF4EBP1Q13541 118 aaPredicted RBP8.31□□□□□ -1.08
SS18-205ENST00000542420 CR1LQ2VPA4 569 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 WDR82Q6UXN9 313 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 ZNF66Q6ZN08 573 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 SSX9Q7RTT3 188 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 BATF2Q8N1L9 274 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 GPR146Q96CH1 333 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 ATP5SQ99766 215 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 TMUB1Q9BVT8 246 aa8.31□□□□□ -1.08
SS18-205ENST00000542420 WDR87Q6ZQQ6 2873 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 ITGB1BP1O14713 200 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 HBE1P02100 147 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 ADH4P08319 380 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 SULT1A1P50225 295 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 ERVS71-1P61550 626 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 NHLH2Q02577 135 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 TCF15Q12870 199 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 C21orf62-AS1Q17RA5 79 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 RHOVQ96L33 236 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 SMIM3Q9BZL3 60 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 PRDM13Q9H4Q3 707 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 BDP1A6H8Y1 2624 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 A0A0C4DFX4 3053 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 GTF3C1Q12789 2109 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 FAM24AA6NFZ4 105 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 FAM90A9PA6NNJ1 464 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 PROB1E7EW31 1015 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 SSSCA1O60232 199 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 IGHV3-13P01766 116 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 PSG2P11465 335 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 GLRXP35754 106 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 CASP6P55212 293 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 SRSF6Q13247 344 aaKnown RBP8.3□□□□□ -1.08
SS18-205ENST00000542420 ALKBH6Q3KRA9 238 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 TMEM30BQ3MIR4 351 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 PYY3Q5JQD4 70 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 INTS1Q8N201 2190 aaKnown RBP8.3□□□□□ -1.08
SS18-205ENST00000542420 ZNF610Q8N9Z0 462 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 HIST1H2BAQ96A08 127 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 PSMG3Q9BT73 122 aaPredicted RBP8.3□□□□□ -1.08
SS18-205ENST00000542420 SCRT1Q9BWW7 348 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 UNKLQ9H9P5 680 aaKnown RBP8.3□□□□□ -1.08
SS18-205ENST00000542420 OR1A1Q9P1Q5 309 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 WASF3Q9UPY6 502 aa8.3□□□□□ -1.08
SS18-205ENST00000542420 TRAV1-1A0A0B4J248 108 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 SRRM5B3KS81 715 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 GRPP07492 148 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 SFTA3P0C7M3 94 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 CEACAM8P31997 349 aaPredicted RBP8.29□□□□□ -1.08
SS18-205ENST00000542420 CEACAM6P40199 344 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 PAX9P55771 341 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 RAB2AP61019 212 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 CXorf66Q5JRM2 361 aaPredicted RBP8.29□□□□□ -1.08
SS18-205ENST00000542420 SP5Q6BEB4 398 aaPredicted RBP8.29□□□□□ -1.08
SS18-205ENST00000542420 SEM1Q6ZVN7 128 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 DRAM1Q8N682 238 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 BSCL2Q96G97 398 aaPredicted RBP8.29□□□□□ -1.08
SS18-205ENST00000542420 GAB2Q9UQC2 676 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 IGLV3-9A0A075B6K5 115 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 C1orf196B1AJZ1 125 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 H0YL77 283 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 SYNGR2O43760 224 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 CHST1O43916 411 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 P0C879 139 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 ATP6V0CP27449 155 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 IL2RGP31785 369 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 GATA4P43694 442 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 OR3A1P47881 315 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms