RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 LGALS14Q8TCE9 139 aa10.36□□□□□ -0.75
VPS28-216ENST00000533806 CMSS1Q9BQ75 279 aaKnown RBP10.36□□□□□ -0.75
VPS28-216ENST00000533806 AGMATQ9BSE5 352 aa10.36□□□□□ -0.75
VPS28-216ENST00000533806 FUNDC2Q9BWH2 189 aa10.36□□□□□ -0.75
VPS28-216ENST00000533806 CHMP1AQ9HD42 196 aaPredicted RBP10.36□□□□□ -0.75
VPS28-216ENST00000533806 ELF5Q9UKW6 265 aaPredicted RBP10.36□□□□□ -0.75
VPS28-216ENST00000533806 MGAT4AQ9UM21 535 aa10.36□□□□□ -0.75
VPS28-216ENST00000533806 SERPINE3A8MV23 424 aa10.35□□□□□ -0.75
VPS28-216ENST00000533806 TRDCB7Z8K6 153 aa10.35□□□□□ -0.75
VPS28-216ENST00000533806 ITGB1BP1O14713 200 aa10.35□□□□□ -0.75
VPS28-216ENST00000533806 LANCL1O43813 399 aa10.35□□□□□ -0.75
VPS28-216ENST00000533806 SNRNP70P08621 437 aaKnown RBP10.35□□□□□ -0.75
VPS28-216ENST00000533806 SCTP09683 121 aa10.35□□□□□ -0.75
VPS28-216ENST00000533806 REG1BP48304 166 aa10.35□□□□□ -0.75
VPS28-216ENST00000533806 HLA-DRB3P79483 266 aa10.35□□□□□ -0.75
VPS28-216ENST00000533806 HERPUD1Q15011 391 aa10.35□□□□□ -0.75
VPS28-216ENST00000533806 SRSF7Q16629 238 aaKnown RBP eCLIP10.35□□□□□ -0.75
VPS28-216ENST00000533806 C11orf88Q6PI97 169 aa10.35□□□□□ -0.75
VPS28-216ENST00000533806 Q6ZS49 121 aa10.35□□□□□ -0.75
VPS28-216ENST00000533806 Q8N6K4 173 aa10.35□□□□□ -0.75
VPS28-216ENST00000533806 DTX3Q8N9I9 347 aa10.35□□□□□ -0.75
VPS28-216ENST00000533806 OR5H6Q8NGV6 325 aa10.35□□□□□ -0.75
VPS28-216ENST00000533806 SGMS2Q8NHU3 365 aa10.35□□□□□ -0.75
VPS28-216ENST00000533806 SLC25A38Q96DW6 304 aa10.35□□□□□ -0.75
VPS28-216ENST00000533806 WNT10AQ9GZT5 417 aa10.35□□□□□ -0.75
VPS28-216ENST00000533806 TOLLIPQ9H0E2 274 aa10.35□□□□□ -0.75
VPS28-216ENST00000533806 PARP12Q9H0J9 701 aaKnown RBP10.35□□□□□ -0.75
VPS28-216ENST00000533806 ATG5Q9H1Y0 275 aa10.35□□□□□ -0.75
VPS28-216ENST00000533806 IFI27L2Q9H2X8 130 aa10.35□□□□□ -0.75
VPS28-216ENST00000533806 ABRACLQ9P1F3 81 aa10.35□□□□□ -0.75
VPS28-216ENST00000533806 HAX1O00165 279 aa10.34□□□□□ -0.75
VPS28-216ENST00000533806 RGS11O94810 467 aa10.34□□□□□ -0.75
VPS28-216ENST00000533806 FCGR3AP08637 254 aa10.34□□□□□ -0.75
VPS28-216ENST00000533806 IL3RAP26951 378 aa10.34□□□□□ -0.75
VPS28-216ENST00000533806 CD1BP29016 333 aa10.34□□□□□ -0.75
VPS28-216ENST00000533806 ARL6IP1Q15041 203 aa10.34□□□□□ -0.75
VPS28-216ENST00000533806 ZNF260Q3ZCT1 412 aa10.34□□□□□ -0.75
VPS28-216ENST00000533806 CDNFQ49AH0 187 aa10.34□□□□□ -0.75
VPS28-216ENST00000533806 IZUMO1Q8IYV9 350 aa10.34□□□□□ -0.75
VPS28-216ENST00000533806 OR2T6Q8NHC8 308 aa10.34□□□□□ -0.75
VPS28-216ENST00000533806 CAPSLQ8WWF8 208 aa10.34□□□□□ -0.75
VPS28-216ENST00000533806 IL1F10Q8WWZ1 152 aa10.34□□□□□ -0.75
VPS28-216ENST00000533806 ZNF251Q9BRH9 671 aa10.34□□□□□ -0.75
VPS28-216ENST00000533806 SLC25A33Q9BSK2 321 aa10.34□□□□□ -0.75
VPS28-216ENST00000533806 ABHD14AQ9BUJ0 271 aa10.34□□□□□ -0.75
VPS28-216ENST00000533806 PRSS22Q9GZN4 317 aa10.34□□□□□ -0.75
VPS28-216ENST00000533806 RHBDL2Q9NX52 303 aa10.34□□□□□ -0.75
VPS28-216ENST00000533806 OR1A1Q9P1Q5 309 aa10.34□□□□□ -0.75
VPS28-216ENST00000533806 ETV7Q9Y603 341 aa10.34□□□□□ -0.75
VPS28-216ENST00000533806 ZNF736B4DX44 427 aaPredicted RBP10.33□□□□□ -0.76
VPS28-216ENST00000533806 TXNL1O43396 289 aa10.33□□□□□ -0.76
VPS28-216ENST00000533806 PROP1O75360 226 aa10.33□□□□□ -0.76
VPS28-216ENST00000533806 DIRAS3O95661 229 aa10.33□□□□□ -0.76
VPS28-216ENST00000533806 TFAP2AP05549 437 aa10.33□□□□□ -0.76
VPS28-216ENST00000533806 CD3GP09693 182 aa10.33□□□□□ -0.76
VPS28-216ENST00000533806 ALDH3B2P48448 385 aa10.33□□□□□ -0.76
VPS28-216ENST00000533806 LSM3P62310 102 aaKnown RBP10.33□□□□□ -0.76
VPS28-216ENST00000533806 PRR31Q5SQ13 230 aa10.33□□□□□ -0.76
VPS28-216ENST00000533806 IDNKQ5T6J7 187 aa10.33□□□□□ -0.76
VPS28-216ENST00000533806 HACD4Q5VWC8 232 aa10.33□□□□□ -0.76
VPS28-216ENST00000533806 ZNF833PQ6ZTB9 187 aa10.33□□□□□ -0.76
VPS28-216ENST00000533806 MOB3BQ86TA1 216 aa10.33□□□□□ -0.76
VPS28-216ENST00000533806 TGIF2LXQ8IUE1 241 aa10.33□□□□□ -0.76
VPS28-216ENST00000533806 LYG1Q8N1E2 194 aa10.33□□□□□ -0.76
VPS28-216ENST00000533806 SETD6Q8TBK2 473 aa10.33□□□□□ -0.76
VPS28-216ENST00000533806 EAF1Q96JC9 268 aaPredicted RBP10.33□□□□□ -0.76
VPS28-216ENST00000533806 AKR1E2Q96JD6 320 aa10.33□□□□□ -0.76
VPS28-216ENST00000533806 CABLES2Q9BTV7 478 aa10.33□□□□□ -0.76
VPS28-216ENST00000533806 PLSCR3Q9NRY6 295 aa10.33□□□□□ -0.76
VPS28-216ENST00000533806 SLC23A1Q9UHI7 598 aa10.33□□□□□ -0.76
VPS28-216ENST00000533806 SPATA2Q9UM82 520 aa10.33□□□□□ -0.76
VPS28-216ENST00000533806 CMYA5Q8N3K9 4069 aa10.33□□□□□ -0.76
VPS28-216ENST00000533806 IGKV1D-8A0A087WSZ0 117 aa10.32□□□□□ -0.76
VPS28-216ENST00000533806 SAA2-SAA4A0A096LPE2 208 aa10.32□□□□□ -0.76
VPS28-216ENST00000533806 IGHV3-72A0A0B4J1Y9 119 aa10.32□□□□□ -0.76
VPS28-216ENST00000533806 M0QZK8 103 aa10.32□□□□□ -0.76
VPS28-216ENST00000533806 SCGNO76038 276 aa10.32□□□□□ -0.76
VPS28-216ENST00000533806 IGKV1D-33P01593 117 aa10.32□□□□□ -0.76
VPS28-216ENST00000533806 IGKV1-33P01594 117 aa10.32□□□□□ -0.76
VPS28-216ENST00000533806 GSTP1P09211 210 aaKnown RBP10.32□□□□□ -0.76
VPS28-216ENST00000533806 SAA2P0DJI9 122 aaPredicted RBP10.32□□□□□ -0.76
VPS28-216ENST00000533806 DTYMKP23919 212 aa10.32□□□□□ -0.76
VPS28-216ENST00000533806 ZBTB25P24278 435 aa10.32□□□□□ -0.76
VPS28-216ENST00000533806 CEACAM6P40199 344 aa10.32□□□□□ -0.76
VPS28-216ENST00000533806 OR3A3P47888 321 aa10.32□□□□□ -0.76
VPS28-216ENST00000533806 NCS1P62166 190 aa10.32□□□□□ -0.76
VPS28-216ENST00000533806 CTF1Q16619 201 aa10.32□□□□□ -0.76
VPS28-216ENST00000533806 ANKRD13BQ86YJ7 626 aa10.32□□□□□ -0.76
VPS28-216ENST00000533806 CROCCP3Q8IVE0 287 aa10.32□□□□□ -0.76
VPS28-216ENST00000533806 C5orf56Q8N8D9 126 aa10.32□□□□□ -0.76
VPS28-216ENST00000533806 OR2AK2Q8NG84 335 aa10.32□□□□□ -0.76
VPS28-216ENST00000533806 OR4A4PQ8NGN8 299 aa10.32□□□□□ -0.76
VPS28-216ENST00000533806 SLC25A46Q96AG3 418 aa10.32□□□□□ -0.76
VPS28-216ENST00000533806 RBMXL1Q96E39 390 aaKnown RBP10.32□□□□□ -0.76
VPS28-216ENST00000533806 MRPS26Q9BYN8 205 aaKnown RBP10.32□□□□□ -0.76
VPS28-216ENST00000533806 C11orf54Q9H0W9 315 aaPredicted RBP10.32□□□□□ -0.76
VPS28-216ENST00000533806 ABCG5Q9H222 651 aa10.32□□□□□ -0.76
VPS28-216ENST00000533806 GHITMQ9H3K2 345 aa10.32□□□□□ -0.76
VPS28-216ENST00000533806 ZNF230Q9UIE0 474 aaPredicted RBP10.32□□□□□ -0.76
VPS28-216ENST00000533806 A0A075B6Q4 140 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms