RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 HTR3BO95264 441 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 IGLV1-40P01703 118 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 MT-ND4P03905 459 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 CD36P16671 472 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 IGFBP3P17936 291 aaPredicted RBP11.05□□□□□ -0.64
CPSF1-201ENST00000526271 SOX2P48431 317 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 KCNJ3P48549 501 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 RBM11P57052 281 aaKnown RBP11.05□□□□□ -0.64
CPSF1-201ENST00000526271 NDPQ00604 133 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 FABP5Q01469 135 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 INSL4Q14641 139 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 C19orf54Q5BKX5 351 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 NHLRC3Q5JS37 347 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 ODF3L1Q8IXM7 274 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 C8orf31Q8N9H6 132 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 OR52M1Q8NGK5 317 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 OR5D14Q8NGL3 314 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 OR13F1Q8NGS4 319 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 TSEN15Q8WW01 171 aaKnown RBP11.05□□□□□ -0.64
CPSF1-201ENST00000526271 PHYHIPQ92561 330 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 DCUN1D4Q92564 292 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 THRSPQ92748 146 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 ARL11Q969Q4 196 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 TMEM106AQ96A25 262 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 YIPF6Q96EC8 236 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 DERL3Q96Q80 235 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 OR5B12Q96R08 314 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 OR14A2Q96R54 314 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 ZNF107Q9UII5 783 aaPredicted RBP11.05□□□□□ -0.64
CPSF1-201ENST00000526271 ST3GAL6Q9Y274 331 aa11.05□□□□□ -0.64
CPSF1-201ENST00000526271 FAM90A10PA6NDY2 464 aa11.04□□□□□ -0.64
CPSF1-201ENST00000526271 C12orf77C9JDV5 145 aa11.04□□□□□ -0.64
CPSF1-201ENST00000526271 SDCBPO00560 298 aaPredicted RBP11.04□□□□□ -0.64
CPSF1-201ENST00000526271 MOSP00540 346 aa11.04□□□□□ -0.64
CPSF1-201ENST00000526271 CD2P06729 351 aa11.04□□□□□ -0.64
CPSF1-201ENST00000526271 UCHL1P09936 223 aa11.04□□□□□ -0.64
CPSF1-201ENST00000526271 FRMD6-AS1P0C7T7 363 aa11.04□□□□□ -0.64
CPSF1-201ENST00000526271 SLC2A2P11168 524 aaPredicted RBP11.04□□□□□ -0.64
CPSF1-201ENST00000526271 SPNP16150 400 aa11.04□□□□□ -0.64
CPSF1-201ENST00000526271 RUNX1Q01196 453 aa11.04□□□□□ -0.64
CPSF1-201ENST00000526271 ZNF497Q6ZNH5 498 aa11.04□□□□□ -0.64
CPSF1-201ENST00000526271 SLC25A48Q6ZT89 311 aaKnown RBP11.04□□□□□ -0.64
CPSF1-201ENST00000526271 CEACAM19Q7Z692 300 aa11.04□□□□□ -0.64
CPSF1-201ENST00000526271 SATL1Q86VE3 508 aa11.04□□□□□ -0.64
CPSF1-201ENST00000526271 CPNE2Q96FN4 548 aaPredicted RBP11.04□□□□□ -0.64
CPSF1-201ENST00000526271 ZMAT5Q9UDW3 170 aaKnown RBP11.04□□□□□ -0.64
CPSF1-201ENST00000526271 WSB1Q9Y6I7 421 aa11.04□□□□□ -0.64
CPSF1-201ENST00000526271 SMAD5-AS1Q9Y6J3 95 aa11.04□□□□□ -0.64
CPSF1-201ENST00000526271 IGHV7-81A0A0B4J1V7 117 aa11.03□□□□□ -0.64
CPSF1-201ENST00000526271 A0A1W2PPK0 400 aa11.03□□□□□ -0.64
CPSF1-201ENST00000526271 ATP6V0E1O15342 81 aa11.03□□□□□ -0.64
CPSF1-201ENST00000526271 FSTP19883 344 aa11.03□□□□□ -0.64
CPSF1-201ENST00000526271 MAPK3P27361 379 aaPredicted RBP11.03□□□□□ -0.64
CPSF1-201ENST00000526271 FGF9P31371 208 aaPredicted RBP11.03□□□□□ -0.64
CPSF1-201ENST00000526271 RPL5P46777 297 aaKnown RBP11.03□□□□□ -0.64
CPSF1-201ENST00000526271 GAPTQ8N292 157 aa11.03□□□□□ -0.64
CPSF1-201ENST00000526271 OR10V1Q8NGI7 309 aa11.03□□□□□ -0.64
CPSF1-201ENST00000526271 OR1N2Q8NGR9 330 aa11.03□□□□□ -0.64
CPSF1-201ENST00000526271 OR1L1Q8NH94 360 aa11.03□□□□□ -0.64
CPSF1-201ENST00000526271 CASTOR1Q8WTX7 329 aa11.03□□□□□ -0.64
CPSF1-201ENST00000526271 DLX4Q92988 240 aaPredicted RBP11.03□□□□□ -0.64
CPSF1-201ENST00000526271 IL36GQ9NZH8 169 aa11.03□□□□□ -0.64
CPSF1-201ENST00000526271 STUB1Q9UNE7 303 aa11.03□□□□□ -0.64
CPSF1-201ENST00000526271 ALMS1Q8TCU4 4167 aa11.03□□□□□ -0.64
CPSF1-201ENST00000526271 TMEM30CPA0ZSE6 113 aa11.02□□□□□ -0.65
CPSF1-201ENST00000526271 ORC5O43913 435 aa11.02□□□□□ -0.65
CPSF1-201ENST00000526271 OR7C1O76099 320 aaPredicted RBP11.02□□□□□ -0.65
CPSF1-201ENST00000526271 SRMP19623 302 aa11.02□□□□□ -0.65
CPSF1-201ENST00000526271 RAB3AP20336 220 aa11.02□□□□□ -0.65
CPSF1-201ENST00000526271 GZMHP20718 246 aa11.02□□□□□ -0.65
CPSF1-201ENST00000526271 SOX6P35712 828 aa11.02□□□□□ -0.65
CPSF1-201ENST00000526271 SLURP1P55000 103 aa11.02□□□□□ -0.65
CPSF1-201ENST00000526271 LSAMPQ13449 338 aa11.02□□□□□ -0.65
CPSF1-201ENST00000526271 GNMTQ14749 295 aa11.02□□□□□ -0.65
CPSF1-201ENST00000526271 FAM27D1Q5T7N8 215 aa11.02□□□□□ -0.65
CPSF1-201ENST00000526271 UBE2E2Q96LR5 201 aa11.02□□□□□ -0.65
CPSF1-201ENST00000526271 FAM192AQ9GZU8 254 aa11.02□□□□□ -0.65
CPSF1-201ENST00000526271 OR51E2Q9H255 320 aa11.02□□□□□ -0.65
CPSF1-201ENST00000526271 EDA2RQ9HAV5 297 aa11.02□□□□□ -0.65
CPSF1-201ENST00000526271 RCC2Q9P258 522 aaKnown RBP11.02□□□□□ -0.65
CPSF1-201ENST00000526271 TRAV8-7A0A075B6U6 113 aa11.01□□□□□ -0.65
CPSF1-201ENST00000526271 MAGEB3O15480 346 aa11.01□□□□□ -0.65
CPSF1-201ENST00000526271 CD37P11049 281 aa11.01□□□□□ -0.65
CPSF1-201ENST00000526271 EGR2P11161 476 aaPredicted RBP11.01□□□□□ -0.65
CPSF1-201ENST00000526271 RCC1P18754 421 aaPredicted RBP11.01□□□□□ -0.65
CPSF1-201ENST00000526271 GADD45AP24522 165 aa11.01□□□□□ -0.65
CPSF1-201ENST00000526271 ZNF616Q08AN1 781 aa11.01□□□□□ -0.65
CPSF1-201ENST00000526271 RSU1Q15404 277 aa11.01□□□□□ -0.65
CPSF1-201ENST00000526271 HSD17B12Q53GQ0 312 aa11.01□□□□□ -0.65
CPSF1-201ENST00000526271 ZFAND6Q6FIF0 208 aa11.01□□□□□ -0.65
CPSF1-201ENST00000526271 SIGIRRQ6IA17 410 aa11.01□□□□□ -0.65
CPSF1-201ENST00000526271 HAPLN4Q86UW8 402 aa11.01□□□□□ -0.65
CPSF1-201ENST00000526271 Q8N1Y9 231 aa11.01□□□□□ -0.65
CPSF1-201ENST00000526271 RASL11BQ9BPW5 248 aa11.01□□□□□ -0.65
CPSF1-201ENST00000526271 FUNDC2Q9BWH2 189 aa11.01□□□□□ -0.65
CPSF1-201ENST00000526271 TXNL4BQ9NX01 149 aaKnown RBP11.01□□□□□ -0.65
CPSF1-201ENST00000526271 SSR3Q9UNL2 185 aa11.01□□□□□ -0.65
CPSF1-201ENST00000526271 ING4Q9UNL4 249 aa11.01□□□□□ -0.65
CPSF1-201ENST00000526271 TRAV1-2A0A0B4J238 106 aa11□□□□□ -0.65
CPSF1-201ENST00000526271 ARL6IP5O75915 188 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms