RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 ADAT1Q9BUB4 502 aaKnown RBP2.65□□□□□ -1.99
CD44-217ENST00000525348 FAM124BQ9H5Z6 455 aaPredicted RBP2.65□□□□□ -1.99
CD44-217ENST00000525348 ESM1Q9NQ30 184 aa2.65□□□□□ -1.99
CD44-217ENST00000525348 SLC17A5Q9NRA2 495 aa2.65□□□□□ -1.99
CD44-217ENST00000525348 SMCO4Q9NRQ5 59 aa2.65□□□□□ -1.99
CD44-217ENST00000525348 UBQLN4Q9NRR5 601 aa2.65□□□□□ -1.99
CD44-217ENST00000525348 INPP5EQ9NRR6 644 aa2.65□□□□□ -1.99
CD44-217ENST00000525348 RBFOX1Q9NWB1 397 aaKnown RBP2.65□□□□□ -1.99
CD44-217ENST00000525348 HSPB8Q9UJY1 196 aa2.65□□□□□ -1.99
CD44-217ENST00000525348 MMP17Q9ULZ9 603 aa2.65□□□□□ -1.99
CD44-217ENST00000525348 POMPQ9Y244 141 aa2.65□□□□□ -1.99
CD44-217ENST00000525348 KLHDC2Q9Y2U9 406 aa2.65□□□□□ -1.99
CD44-217ENST00000525348 TIMM10BQ9Y5J6 103 aa2.65□□□□□ -1.99
CD44-217ENST00000525348 V9GYY9 64 aa2.65□□□□□ -1.99
CD44-217ENST00000525348 RLFQ13129 1914 aa2.65□□□□□ -1.99
CD44-217ENST00000525348 MYO18AQ92614 2054 aaKnown RBP2.65□□□□□ -1.99
CD44-217ENST00000525348 C4AP0C0L4 1744 aa2.65□□□□□ -1.99
CD44-217ENST00000525348 ZNF106Q9H2Y7 1883 aaKnown RBP2.65□□□□□ -1.99
CD44-217ENST00000525348 SCN11AQ9UI33 1791 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 COL1A2P08123 1366 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 A0A087WUU8 490 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 CENPVL3A0A0U1RRI6 287 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 A0A1W2PRE2 83 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 CLDN24A6NM45 220 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 G3V3Q6 166 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 UPK1AO00322 258 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 SLC17A3O00476 420 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 HCRTR1O43613 425 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 GCGP01275 180 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 IFNW1P05000 195 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 SOD3P08294 240 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 ADRA2AP08913 450 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 UCHL1P09936 223 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 UBBP0CG47 229 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 CT45A10P0DMU9 189 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 HIST1H1CP16403 213 aaKnown RBP2.64□□□□□ -1.99
CD44-217ENST00000525348 SDC1P18827 310 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 CELP19835 753 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 RAB5AP20339 215 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 CSRP1P21291 193 aaKnown RBP2.64□□□□□ -1.99
CD44-217ENST00000525348 GLP1RP43220 463 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 CRYBB2P43320 205 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 KIR2DS4P43632 304 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 GYG1P46976 350 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 AKR1C2P52895 323 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 UBE2MP61081 183 aaKnown RBP2.64□□□□□ -1.99
CD44-217ENST00000525348 RHOAP61586 193 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 RPS15AP62244 130 aaKnown RBP2.64□□□□□ -1.99
CD44-217ENST00000525348 RHOBP62745 196 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 NTHL1P78549 312 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 SMAGPQ0VAQ4 97 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 OR2F1Q13607 317 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 EIF2B1Q14232 305 aaKnown RBP2.64□□□□□ -1.99
CD44-217ENST00000525348 LIPKQ5VXJ0 399 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 NEGR1Q7Z3B1 354 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 PARGQ86W56 976 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 CALHM3Q86XJ0 350 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 UMODL1-AS1Q8N2C9 162 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 MUC15Q8N387 334 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 BPIFB2Q8N4F0 458 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 SPICQ8N5J4 248 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 EID2Q8N6I1 236 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 INO80EQ8NBZ0 244 aaPredicted RBP2.64□□□□□ -1.99
CD44-217ENST00000525348 CHST4Q8NCG5 386 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 PLPP5Q8NEB5 264 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 DUSP18Q8NEJ0 188 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 NOXO1Q8NFA2 376 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 OR4F6Q8NGB9 312 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 OR51Q1Q8NH59 317 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 MCFD2Q8NI22 146 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 SYNPRQ8TBG9 265 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 SKA2Q8WVK7 121 aaPredicted RBP2.64□□□□□ -1.99
CD44-217ENST00000525348 CANT1Q8WVQ1 401 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 ART4Q93070 314 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 TMEM159Q96B96 161 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 C10orf35Q96D05 121 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 DNAJC30Q96LL9 226 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 RDH12Q96NR8 316 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 MBOAT4Q96T53 435 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 GPR22Q99680 433 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 MRPL57Q9BQC6 102 aaKnown RBP2.64□□□□□ -1.99
CD44-217ENST00000525348 MIEN1Q9BRT3 115 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 GINS3Q9BRX5 216 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 RSPO3Q9BXY4 272 aaPredicted RBP2.64□□□□□ -1.99
CD44-217ENST00000525348 LCE3DQ9BYE3 92 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 SELENOIQ9C0D9 397 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 ARL6Q9H0F7 186 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 CWH43Q9H720 699 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 BEX1Q9HBH7 125 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 DOK5Q9P104 306 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 IKZF2Q9UKS7 526 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 C10orf71Q711Q0 1435 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 NUP210LQ5VU65 1888 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 NCKAP5O14513 1909 aa2.64□□□□□ -1.99
CD44-217ENST00000525348 FRMPD3Q5JV73 1810 aa2.63□□□□□ -1.99
CD44-217ENST00000525348 PALLDQ8WX93 1383 aa2.63□□□□□ -1.99
CD44-217ENST00000525348 CITO14578 2027 aa2.63□□□□□ -1.99
CD44-217ENST00000525348 FER1L6Q2WGJ9 1857 aa2.63□□□□□ -1.99
CD44-217ENST00000525348 LOC102724200A0A096LPH7 203 aaPredicted RBP2.63□□□□□ -1.99
CD44-217ENST00000525348 A0A0B4J2E0 115 aa2.63□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms