RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 WNT5BQ9H1J7 359 aa10.1□□□□□ -0.79
SYNPO-204ENST00000519664 HEXA-AS1Q9H8Q6 139 aa10.1□□□□□ -0.79
SYNPO-204ENST00000519664 ZNF835Q9Y2P0 537 aa10.1□□□□□ -0.79
SYNPO-204ENST00000519664 DLK1P80370 383 aa10.1□□□□□ -0.79
SYNPO-204ENST00000519664 MOB3BQ86TA1 216 aa10.1□□□□□ -0.79
SYNPO-204ENST00000519664 HIST1H2BAQ96A08 127 aa10.1□□□□□ -0.79
SYNPO-204ENST00000519664 LYRM2Q9NU23 88 aaPredicted RBP10.1□□□□□ -0.79
SYNPO-204ENST00000519664 A0A1B0GTI1 187 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 H3BQ15 152 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 CLN5O75503 358 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 F2RP25116 425 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 SUB1P53999 127 aaKnown RBP eCLIP10.09□□□□□ -0.79
SYNPO-204ENST00000519664 VAMP8Q9BV40 100 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 SH3BGRL3Q9H299 93 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 HIF1ANQ9NWT6 349 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 C21orf140B9A014 251 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 CD74P04233 296 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 IL3RAP26951 378 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 CDC34P49427 236 aaPredicted RBP10.09□□□□□ -0.79
SYNPO-204ENST00000519664 HIST1H3AP68431 136 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 CEACAM21Q3KPI0 293 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 BTNL8Q6UX41 500 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 OR52L2PQ8NGH6 319 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 Q96M66 194 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 ATP5SQ99766 215 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 IL36GQ9NZH8 169 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 PITPNC1Q9UKF7 332 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 CACNA1AO00555 2505 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 PLXND1Q9Y4D7 1925 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 XKRY2A2RUG3 117 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 CXorf65A6NEN9 183 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 ZIC3O60481 467 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 MMP9P14780 707 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 NUFIP2Q7Z417 695 aaKnown RBP10.09□□□□□ -0.79
SYNPO-204ENST00000519664 CALHM1Q8IU99 346 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 R3HDM4Q96D70 268 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 CARHSP1Q9Y2V2 147 aaKnown RBP10.09□□□□□ -0.79
SYNPO-204ENST00000519664 ACTL6AO96019 429 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 HKR1P10072 659 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 CCL8P80075 99 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 PHYHD1Q5SRE7 291 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 PPP1R32Q7Z5V6 425 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 CYB561D1Q8N8Q1 229 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 BOD1Q96IK1 185 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 POM121L2Q96KW2 1035 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 SIGLEC12Q96PQ1 595 aa10.09□□□□□ -0.79
SYNPO-204ENST00000519664 THADAQ6YHU6 1953 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 B4E171 279 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 NDUFS6O75380 124 aaKnown RBP10.08□□□□□ -0.8
SYNPO-204ENST00000519664 DEDDO75618 318 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 SEC11BP0C7V7 166 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 TSPAN7P41732 249 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 SUMO1P63165 101 aaKnown RBP10.08□□□□□ -0.8
SYNPO-204ENST00000519664 KLHDC1Q8N7A1 406 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 OR5B3Q8NH48 314 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 RND1Q92730 232 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 CXXC4Q9H2H0 198 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 ZNF552Q9H707 407 aaPredicted RBP10.08□□□□□ -0.8
SYNPO-204ENST00000519664 CLCF1Q9UBD9 225 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 HSF4Q9ULV5 492 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 TRPM7Q96QT4 1865 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 PCNX2A6NKB5 2137 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 EFNA2O43921 213 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 CCKARP32238 428 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 FGF12P61328 243 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 PMS2P11Q13670 270 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 TOMM20LQ6UXN7 152 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 CPEB3Q8NE35 698 aaKnown RBP10.08□□□□□ -0.8
SYNPO-204ENST00000519664 RNF122Q9H9V4 155 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 PARP11Q9NR21 331 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 AUP1Q9Y679 476 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 DOCK11Q5JSL3 2073 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 NPIPB7O75200 414 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 TNFRSF1AP19438 455 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 COX7A1P24310 79 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 THBS3P49746 956 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 TAS2R45P59539 299 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 MRPS11P82912 194 aaKnown RBP10.08□□□□□ -0.8
SYNPO-204ENST00000519664 FNDC7Q5VTL7 733 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 SNX22Q96L94 193 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 ZNF586Q9NXT0 402 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 NOTCH2Q04721 2471 aa10.08□□□□□ -0.8
SYNPO-204ENST00000519664 HELZP42694 1942 aaKnown RBP10.07□□□□□ -0.8
SYNPO-204ENST00000519664 TCF21O43680 179 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 PAGE4O60829 102 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 OPRK1P41145 380 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 REG1BP48304 166 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 RPL11P62913 178 aaKnown RBP10.07□□□□□ -0.8
SYNPO-204ENST00000519664 OR5I1Q13606 314 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 NFAM1Q8NET5 270 aaPredicted RBP10.07□□□□□ -0.8
SYNPO-204ENST00000519664 VOPP1Q96AW1 172 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 NPTNQ9Y639 398 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 FAM208BQ5VWN6 2430 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 NDUFB3O43676 98 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 MDH2P40926 338 aaKnown RBP10.07□□□□□ -0.8
SYNPO-204ENST00000519664 GALR1P47211 349 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 TMEM183BQ1AE95 376 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 BSXQ3C1V8 233 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 RNF144BQ7Z419 303 aa10.07□□□□□ -0.8
SYNPO-204ENST00000519664 ZNF665Q9H7R5 613 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms