RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 ZSCAN16Q9H4T2 348 aaPredicted RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM96AQ9H5X1 160 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 CLMPQ9H6B4 373 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 METTL17Q9H7H0 456 aaPredicted RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 PTGES2Q9H7Z7 377 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 HEXA-AS1Q9H8Q6 139 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 NANOGQ9H9S0 305 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 TPT1P8Q9HAU6 139 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 EDA2RQ9HAV5 297 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 LRTM1Q9HBL6 345 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 NOX3Q9HBY0 568 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 SDF2L1Q9HCN8 221 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM138Q9NPI0 162 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 PRTFDC1Q9NRG1 225 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 CCL28Q9NRJ3 127 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 CISHQ9NSE2 258 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ACER3Q9NUN7 267 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM100Q9NV29 134 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 C14orf105Q9NVL8 296 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 RBFOX1Q9NWB1 397 aaKnown RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 MED29Q9NX70 200 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 RASL12Q9NYN1 266 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 TAS2R1Q9NYW7 299 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 MRPL27Q9P0M9 148 aaKnown RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 GSKIPQ9P0R6 139 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF581Q9P0T4 197 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 DHRS4-AS1Q9P1J3 65 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 LAMTOR3Q9UHA4 124 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 NUFIP1Q9UHK0 495 aaKnown RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ENOPH1Q9UHY7 261 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 LINC00527Q9UJ94 153 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 CELA1Q9UNI1 258 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 NEU3Q9UQ49 428 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 PSG8Q9UQ74 426 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 C14orf166Q9Y224 244 aaKnown RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 POMPQ9Y244 141 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 UTP11Q9Y3A2 253 aaKnown RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 WASHC3Q9Y3C0 194 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 HDGFL3Q9Y3E1 203 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 PYGO1Q9Y3Y4 419 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM32AQ9Y421 112 aaKnown RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 NEUROG3Q9Y4Z2 214 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 YTHDF2Q9Y5A9 579 aaKnown RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 CSAG2Q9Y5P2 127 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 F11RQ9Y624 299 aaKnown RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF780BQ9Y6R6 833 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM56-RWDD3S4R434 201 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ATRNO75882 1429 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 WRNQ14191 1432 aaPredicted RBP eCLIP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 UHRF1BP1Q6BDS2 1440 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 MIA2Q96PC5 1412 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 SETD5Q9C0A6 1442 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 CEP170Q5SW79 1584 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 RB1CC1Q8TDY2 1594 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 BICRAQ9NZM4 1560 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 DENND4AQ7Z401 1863 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 RFX7Q2KHR2 1363 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 DHX57Q6P158 1386 aaKnown RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 RTL9Q8NET4 1388 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 CCNB3Q8WWL7 1395 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ABCC12Q96J65 1359 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 KIF15Q9NS87 1388 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 MED23Q9ULK4 1368 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 ADGBQ8N7X0 1667 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 VIRMAQ69YN4 1812 aaKnown RBP0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 MYO5BQ9ULV0 1848 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 CACNA1FO60840 1977 aa0.43□□□□□ -2.34
RNU4-54P-201ENST00000516428 VWA8A3KMH1 1905 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 TDRD15B5MCY1 1934 aaKnown RBP0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 WDR97A6NE52 1622 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 CAMSAP2Q08AD1 1489 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 BCL9LQ86UU0 1499 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 NEO1Q92859 1461 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGSF9BQ9UPX0 1349 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 NOTCH3Q9UM47 2321 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 NOTCH4Q99466 2003 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 HECW2Q9P2P5 1572 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 REREQ9P2R6 1566 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 OVOS2A0A0J9YW53 1432 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 BCL9O00512 1426 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 PLCH2O75038 1416 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 TNS3Q68CZ2 1445 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 FMN1Q68DA7 1419 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 OVOS2Q6IE36 1432 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 SPATA31E1Q6ZUB1 1445 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 ADAMTS13Q76LX8 1427 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 CNTLNQ9NXG0 1405 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGLV11-55A0A075B6I3 123 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 TRBV19A0A075B6N1 114 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGKV1-27A0A075B6S5 117 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 A0A087X002 238 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 TRAV26-2A0A0B4J265 109 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 TRAV4A0A0B4J268 109 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGHV1OR15-9A0A0B4J2B8 117 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 CCL15-CCL14A0A0B4J2E2 113 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGKV1-8A0A0C4DH67 115 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGHV1-69-2A0A0G2JMI3 117 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 A0A0J9YXY3 114 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM236DA0A1B0GTK5 79 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 A0A1B0GVY2 172 aa0.42□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 141.4 ms