RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 HSPB9Q9BQS6 159 aa13.74□□□□□ -0.21
DDX41-217ENST00000515562 TM2D1Q9BX74 207 aa13.74□□□□□ -0.21
DDX41-217ENST00000515562 TPRKBQ9Y3C4 175 aa13.74□□□□□ -0.21
DDX41-217ENST00000515562 ANKRD65E5RJM6 399 aa13.73□□□□□ -0.21
DDX41-217ENST00000515562 K7EIL1 84 aa13.73□□□□□ -0.21
DDX41-217ENST00000515562 IGF1P05019 195 aa13.73□□□□□ -0.21
DDX41-217ENST00000515562 RPLP1P05386 114 aaKnown RBP13.73□□□□□ -0.21
DDX41-217ENST00000515562 F2RL1P55085 397 aa13.73□□□□□ -0.21
DDX41-217ENST00000515562 AQP4P55087 323 aa13.73□□□□□ -0.21
DDX41-217ENST00000515562 KRTAP10-11P60412 298 aa13.73□□□□□ -0.21
DDX41-217ENST00000515562 UNC119Q13432 240 aa13.73□□□□□ -0.21
DDX41-217ENST00000515562 IRF3Q14653 427 aa13.73□□□□□ -0.21
DDX41-217ENST00000515562 LIPKQ5VXJ0 399 aa13.73□□□□□ -0.21
DDX41-217ENST00000515562 FAM71F2Q6NXP2 309 aa13.73□□□□□ -0.21
DDX41-217ENST00000515562 ODF3L1Q8IXM7 274 aa13.73□□□□□ -0.21
DDX41-217ENST00000515562 OR8U1Q8NH10 309 aa13.73□□□□□ -0.21
DDX41-217ENST00000515562 CYYR1Q96J86 154 aa13.73□□□□□ -0.21
DDX41-217ENST00000515562 FAAP24Q9BTP7 215 aa13.73□□□□□ -0.21
DDX41-217ENST00000515562 MRPL20Q9BYC9 149 aaKnown RBP13.73□□□□□ -0.21
DDX41-217ENST00000515562 CHMP1AQ9HD42 196 aaPredicted RBP13.73□□□□□ -0.21
DDX41-217ENST00000515562 NKX1-2Q9UD57 310 aaPredicted RBP13.73□□□□□ -0.21
DDX41-217ENST00000515562 STEAP1Q9UHE8 339 aa13.73□□□□□ -0.21
DDX41-217ENST00000515562 ZNF107Q9UII5 783 aaPredicted RBP13.73□□□□□ -0.21
DDX41-217ENST00000515562 SAA2-SAA4A0A096LPE2 208 aa13.72□□□□□ -0.21
DDX41-217ENST00000515562 TMEM14DPA8MWL7 114 aa13.72□□□□□ -0.21
DDX41-217ENST00000515562 NAPSAO96009 420 aa13.72□□□□□ -0.21
DDX41-217ENST00000515562 IGHG4P01861 327 aa13.72□□□□□ -0.21
DDX41-217ENST00000515562 SAA2P0DJI9 122 aaPredicted RBP13.72□□□□□ -0.21
DDX41-217ENST00000515562 CD37P11049 281 aa13.72□□□□□ -0.21
DDX41-217ENST00000515562 PSMA1P25786 263 aaKnown RBP13.72□□□□□ -0.21
DDX41-217ENST00000515562 HOXD3P31249 432 aaPredicted RBP13.72□□□□□ -0.21
DDX41-217ENST00000515562 CDX1P47902 265 aaPredicted RBP13.72□□□□□ -0.21
DDX41-217ENST00000515562 QRFPP83859 136 aa13.72□□□□□ -0.21
DDX41-217ENST00000515562 CFHR3Q02985 330 aa13.72□□□□□ -0.21
DDX41-217ENST00000515562 TRAM1Q15629 374 aa13.72□□□□□ -0.21
DDX41-217ENST00000515562 ZNF833PQ6ZTB9 187 aa13.72□□□□□ -0.21
DDX41-217ENST00000515562 SVOPQ8N4V2 548 aa13.72□□□□□ -0.21
DDX41-217ENST00000515562 IL1F10Q8WWZ1 152 aa13.72□□□□□ -0.21
DDX41-217ENST00000515562 RAX2Q96IS3 184 aa13.72□□□□□ -0.21
DDX41-217ENST00000515562 CHCHD6Q9BRQ6 235 aa13.72□□□□□ -0.21
DDX41-217ENST00000515562 NICN1Q9BSH3 213 aa13.72□□□□□ -0.21
DDX41-217ENST00000515562 RIMS4Q9H426 269 aaPredicted RBP13.72□□□□□ -0.21
DDX41-217ENST00000515562 ZMAT5Q9UDW3 170 aaKnown RBP13.72□□□□□ -0.21
DDX41-217ENST00000515562 CCL24O00175 119 aa13.71□□□□□ -0.21
DDX41-217ENST00000515562 RGS10O43665 173 aa13.71□□□□□ -0.21
DDX41-217ENST00000515562 ARL6IP5O75915 188 aa13.71□□□□□ -0.21
DDX41-217ENST00000515562 SLC2A2P11168 524 aaPredicted RBP13.71□□□□□ -0.21
DDX41-217ENST00000515562 MYF6P23409 242 aa13.71□□□□□ -0.21
DDX41-217ENST00000515562 BLVRBP30043 206 aaPredicted RBP13.71□□□□□ -0.21
DDX41-217ENST00000515562 ACTBP60709 375 aa13.71□□□□□ -0.21
DDX41-217ENST00000515562 TMEM203Q969S6 136 aa13.71□□□□□ -0.21
DDX41-217ENST00000515562 NABP2Q9BQ15 211 aa13.71□□□□□ -0.21
DDX41-217ENST00000515562 ZNF251Q9BRH9 671 aa13.71□□□□□ -0.21
DDX41-217ENST00000515562 URM1Q9BTM9 101 aaKnown RBP13.71□□□□□ -0.21
DDX41-217ENST00000515562 IFI27L2Q9H2X8 130 aa13.71□□□□□ -0.21
DDX41-217ENST00000515562 KCNK15Q9H427 330 aa13.71□□□□□ -0.21
DDX41-217ENST00000515562 PLGRKTQ9HBL7 147 aa13.71□□□□□ -0.21
DDX41-217ENST00000515562 ISYNA1Q9NPH2 558 aa13.71□□□□□ -0.21
DDX41-217ENST00000515562 PLEKHJ1Q9NW61 149 aa13.71□□□□□ -0.21
DDX41-217ENST00000515562 WI2-2373I1.2A0A1W2PRP0 233 aa13.7□□□□□ -0.22
DDX41-217ENST00000515562 SLC17A2O00624 439 aa13.7□□□□□ -0.22
DDX41-217ENST00000515562 NBR2O15453 112 aa13.7□□□□□ -0.22
DDX41-217ENST00000515562 HSMCR30P0CW71 290 aa13.7□□□□□ -0.22
DDX41-217ENST00000515562 ARSBP15848 533 aa13.7□□□□□ -0.22
DDX41-217ENST00000515562 RAB25P57735 213 aa13.7□□□□□ -0.22
DDX41-217ENST00000515562 DCTN2Q13561 401 aaKnown RBP13.7□□□□□ -0.22
DDX41-217ENST00000515562 TPBGQ13641 420 aa13.7□□□□□ -0.22
DDX41-217ENST00000515562 KIR2DS1Q14954 304 aa13.7□□□□□ -0.22
DDX41-217ENST00000515562 ZNF880Q6PDB4 577 aa13.7□□□□□ -0.22
DDX41-217ENST00000515562 NRG4Q8WWG1 115 aa13.7□□□□□ -0.22
DDX41-217ENST00000515562 KCTD7Q96MP8 289 aa13.7□□□□□ -0.22
DDX41-217ENST00000515562 ANKRD60Q9BZ19 345 aa13.7□□□□□ -0.22
DDX41-217ENST00000515562 DUSP21Q9H596 190 aa13.7□□□□□ -0.22
DDX41-217ENST00000515562 PIPOXQ9P0Z9 390 aa13.7□□□□□ -0.22
DDX41-217ENST00000515562 MGAT4AQ9UM21 535 aa13.7□□□□□ -0.22
DDX41-217ENST00000515562 TRBV6-6A0A0A6YYG2 114 aa13.69□□□□□ -0.22
DDX41-217ENST00000515562 RAB29O14966 203 aa13.69□□□□□ -0.22
DDX41-217ENST00000515562 HLA-DRB1P01911 266 aa13.69□□□□□ -0.22
DDX41-217ENST00000515562 PSMB8P28062 276 aa13.69□□□□□ -0.22
DDX41-217ENST00000515562 RANBP1P43487 201 aa13.69□□□□□ -0.22
DDX41-217ENST00000515562 OR3A3P47888 321 aa13.69□□□□□ -0.22
DDX41-217ENST00000515562 MLLT11Q13015 90 aaPredicted RBP13.69□□□□□ -0.22
DDX41-217ENST00000515562 LCNL1Q6ZST4 164 aa13.69□□□□□ -0.22
DDX41-217ENST00000515562 C5orf24Q7Z6I8 188 aa13.69□□□□□ -0.22
DDX41-217ENST00000515562 OR5M8Q8NGP6 311 aa13.69□□□□□ -0.22
DDX41-217ENST00000515562 SETD6Q8TBK2 473 aa13.69□□□□□ -0.22
DDX41-217ENST00000515562 C4orf3Q8WVX3 66 aa13.69□□□□□ -0.22
DDX41-217ENST00000515562 DUX3Q96PT4 197 aa13.69□□□□□ -0.22
DDX41-217ENST00000515562 LPAR5Q9H1C0 372 aa13.69□□□□□ -0.22
DDX41-217ENST00000515562 VCX3BQ9H321 246 aa13.69□□□□□ -0.22
DDX41-217ENST00000515562 GHITMQ9H3K2 345 aa13.69□□□□□ -0.22
DDX41-217ENST00000515562 KIAA1456Q9P272 454 aa13.69□□□□□ -0.22
DDX41-217ENST00000515562 SLC23A1Q9UHI7 598 aa13.69□□□□□ -0.22
DDX41-217ENST00000515562 A0A0A6YYD4 124 aa13.68□□□□□ -0.22
DDX41-217ENST00000515562 ST8SIA5O15466 376 aa13.68□□□□□ -0.22
DDX41-217ENST00000515562 CPEP16870 476 aa13.68□□□□□ -0.22
DDX41-217ENST00000515562 RPS25P62851 125 aaKnown RBP13.68□□□□□ -0.22
DDX41-217ENST00000515562 P2RY14Q15391 338 aa13.68□□□□□ -0.22
DDX41-217ENST00000515562 RAB11BQ15907 218 aa13.68□□□□□ -0.22
DDX41-217ENST00000515562 C5orf64Q2M2E5 130 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms