RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 GAPTQ8N292 157 aa16.35■□□□□ 0.21
SQSTM1-210ENST00000506042 SETD9Q8NE22 299 aa16.35■□□□□ 0.21
SQSTM1-210ENST00000506042 DCUN1D4Q92564 292 aa16.35■□□□□ 0.21
SQSTM1-210ENST00000506042 ANKRD60Q9BZ19 345 aa16.35■□□□□ 0.21
SQSTM1-210ENST00000506042 GNB4Q9HAV0 340 aa16.35■□□□□ 0.21
SQSTM1-210ENST00000506042 MBNL3Q9NUK0 354 aaKnown RBP16.35■□□□□ 0.21
SQSTM1-210ENST00000506042 ZNF581Q9P0T4 197 aa16.35■□□□□ 0.21
SQSTM1-210ENST00000506042 DIMT1Q9UNQ2 313 aaKnown RBP16.35■□□□□ 0.21
SQSTM1-210ENST00000506042 PDCD6O75340 191 aa16.34■□□□□ 0.21
SQSTM1-210ENST00000506042 RBBP9O75884 186 aa16.34■□□□□ 0.21
SQSTM1-210ENST00000506042 UBBP0CG47 229 aa16.34■□□□□ 0.21
SQSTM1-210ENST00000506042 GP9P14770 177 aa16.34■□□□□ 0.21
SQSTM1-210ENST00000506042 RCC1P18754 421 aaPredicted RBP16.34■□□□□ 0.21
SQSTM1-210ENST00000506042 ETV1P50549 477 aa16.34■□□□□ 0.21
SQSTM1-210ENST00000506042 ZNF134P52741 427 aa16.34■□□□□ 0.21
SQSTM1-210ENST00000506042 ECSCRQ19T08 205 aa16.34■□□□□ 0.21
SQSTM1-210ENST00000506042 OR2G6Q5TZ20 316 aa16.34■□□□□ 0.21
SQSTM1-210ENST00000506042 NPBQ8NG41 125 aa16.34■□□□□ 0.21
SQSTM1-210ENST00000506042 UQCC2Q9BRT2 126 aa16.34■□□□□ 0.21
SQSTM1-210ENST00000506042 SLA2Q9H6Q3 261 aa16.34■□□□□ 0.21
SQSTM1-210ENST00000506042 TRBV5-5A0A0J9YX44 114 aa16.33■□□□□ 0.2
SQSTM1-210ENST00000506042 A0A1W2PP11 408 aa16.33■□□□□ 0.2
SQSTM1-210ENST00000506042 UBE2QL1A1L167 161 aa16.33■□□□□ 0.2
SQSTM1-210ENST00000506042 OR5H14A6NHG9 310 aa16.33■□□□□ 0.2
SQSTM1-210ENST00000506042 G3V318 75 aa16.33■□□□□ 0.2
SQSTM1-210ENST00000506042 RAB29O14966 203 aa16.33■□□□□ 0.2
SQSTM1-210ENST00000506042 GSTP1P09211 210 aaKnown RBP16.33■□□□□ 0.2
SQSTM1-210ENST00000506042 LGALS1P09382 135 aaKnown RBP16.33■□□□□ 0.2
SQSTM1-210ENST00000506042 BLVRBP30043 206 aaPredicted RBP16.33■□□□□ 0.2
SQSTM1-210ENST00000506042 VHLP40337 213 aa16.33■□□□□ 0.2
SQSTM1-210ENST00000506042 SGPP2Q8IWX5 399 aa16.33■□□□□ 0.2
SQSTM1-210ENST00000506042 MINDY2Q8NBR6 621 aa16.33■□□□□ 0.2
SQSTM1-210ENST00000506042 TMEM80Q96HE8 168 aa16.33■□□□□ 0.2
SQSTM1-210ENST00000506042 NABP2Q9BQ15 211 aa16.33■□□□□ 0.2
SQSTM1-210ENST00000506042 MRPL20Q9BYC9 149 aaKnown RBP16.33■□□□□ 0.2
SQSTM1-210ENST00000506042 KLK15Q9H2R5 256 aa16.33■□□□□ 0.2
SQSTM1-210ENST00000506042 SMPD3Q9NY59 655 aaPredicted RBP16.33■□□□□ 0.2
SQSTM1-210ENST00000506042 IGHV7-81A0A0B4J1V7 117 aa16.32■□□□□ 0.2
SQSTM1-210ENST00000506042 FRMD6-AS1P0C7T7 363 aa16.32■□□□□ 0.2
SQSTM1-210ENST00000506042 PPP1CCP36873 323 aaKnown RBP16.32■□□□□ 0.2
SQSTM1-210ENST00000506042 GNB1P62873 340 aa16.32■□□□□ 0.2
SQSTM1-210ENST00000506042 DMKNQ6E0U4 476 aaPredicted RBP16.32■□□□□ 0.2
SQSTM1-210ENST00000506042 XAF1Q6GPH4 301 aa16.32■□□□□ 0.2
SQSTM1-210ENST00000506042 ZNF833PQ6ZTB9 187 aa16.32■□□□□ 0.2
SQSTM1-210ENST00000506042 MOB1BQ7L9L4 216 aa16.32■□□□□ 0.2
SQSTM1-210ENST00000506042 ISOC1Q96CN7 298 aa16.32■□□□□ 0.2
SQSTM1-210ENST00000506042 SLC29A1Q99808 456 aa16.32■□□□□ 0.2
SQSTM1-210ENST00000506042 BANF2Q9H503 90 aa16.32■□□□□ 0.2
SQSTM1-210ENST00000506042 CHMP1AQ9HD42 196 aaPredicted RBP16.32■□□□□ 0.2
SQSTM1-210ENST00000506042 STUB1Q9UNE7 303 aa16.32■□□□□ 0.2
SQSTM1-210ENST00000506042 H3BNX3 289 aa16.31■□□□□ 0.2
SQSTM1-210ENST00000506042 H7C2Y5 167 aa16.31■□□□□ 0.2
SQSTM1-210ENST00000506042 NDUFA3O95167 84 aa16.31■□□□□ 0.2
SQSTM1-210ENST00000506042 HSPB1P04792 205 aaKnown RBP16.31■□□□□ 0.2
SQSTM1-210ENST00000506042 SPNP16150 400 aa16.31■□□□□ 0.2
SQSTM1-210ENST00000506042 C6orf141Q5SZD1 244 aa16.31■□□□□ 0.2
SQSTM1-210ENST00000506042 ACSM6Q6P461 480 aa16.31■□□□□ 0.2
SQSTM1-210ENST00000506042 LYPD6Q86Y78 171 aa16.31■□□□□ 0.2
SQSTM1-210ENST00000506042 ANKRD13BQ86YJ7 626 aa16.31■□□□□ 0.2
SQSTM1-210ENST00000506042 SBSPONQ8IVN8 264 aa16.31■□□□□ 0.2
SQSTM1-210ENST00000506042 OR52L2PQ8NGH6 319 aa16.31■□□□□ 0.2
SQSTM1-210ENST00000506042 EDARADDQ8WWZ3 215 aa16.31■□□□□ 0.2
SQSTM1-210ENST00000506042 Q96M66 194 aa16.31■□□□□ 0.2
SQSTM1-210ENST00000506042 OR14A2Q96R54 314 aa16.31■□□□□ 0.2
SQSTM1-210ENST00000506042 RNF5Q99942 180 aa16.31■□□□□ 0.2
SQSTM1-210ENST00000506042 TOLLIPQ9H0E2 274 aa16.31■□□□□ 0.2
SQSTM1-210ENST00000506042 MGAT4AQ9UM21 535 aa16.31■□□□□ 0.2
SQSTM1-210ENST00000506042 ERICH4A6NGS2 130 aa16.3■□□□□ 0.2
SQSTM1-210ENST00000506042 RRHO14718 337 aa16.3■□□□□ 0.2
SQSTM1-210ENST00000506042 LDLRAD4O15165 306 aa16.3■□□□□ 0.2
SQSTM1-210ENST00000506042 RANBP1P43487 201 aa16.3■□□□□ 0.2
SQSTM1-210ENST00000506042 CRIP2P52943 208 aaPredicted RBP16.3■□□□□ 0.2
SQSTM1-210ENST00000506042 ADARB1P78563 741 aaKnown RBP16.3■□□□□ 0.2
SQSTM1-210ENST00000506042 ACTBL2Q562R1 376 aa16.3■□□□□ 0.2
SQSTM1-210ENST00000506042 TTC23Q5W5X9 447 aa16.3■□□□□ 0.2
SQSTM1-210ENST00000506042 IL1F10Q8WWZ1 152 aa16.3■□□□□ 0.2
SQSTM1-210ENST00000506042 DLX4Q92988 240 aaPredicted RBP16.3■□□□□ 0.2
SQSTM1-210ENST00000506042 RIMS4Q9H426 269 aaPredicted RBP16.3■□□□□ 0.2
SQSTM1-210ENST00000506042 KMT2CQ8NEZ4 4911 aaKnown RBP16.3■□□□□ 0.2
SQSTM1-210ENST00000506042 TRAV8-7A0A075B6U6 113 aa16.29■□□□□ 0.2
SQSTM1-210ENST00000506042 SAA2-SAA4A0A096LPE2 208 aa16.29■□□□□ 0.2
SQSTM1-210ENST00000506042 MYL12BO14950 172 aa16.29■□□□□ 0.2
SQSTM1-210ENST00000506042 TFAP2AP05549 437 aa16.29■□□□□ 0.2
SQSTM1-210ENST00000506042 SAA2P0DJI9 122 aaPredicted RBP16.29■□□□□ 0.2
SQSTM1-210ENST00000506042 ZP3P21754 424 aa16.29■□□□□ 0.2
SQSTM1-210ENST00000506042 CD200R1LQ6Q8B3 271 aa16.29■□□□□ 0.2
SQSTM1-210ENST00000506042 OVCH2Q7RTZ1 564 aa16.29■□□□□ 0.2
SQSTM1-210ENST00000506042 PQLC1Q8N2U9 271 aa16.29■□□□□ 0.2
SQSTM1-210ENST00000506042 OR13C5Q8NGS8 318 aa16.29■□□□□ 0.2
SQSTM1-210ENST00000506042 APH1BQ8WW43 257 aa16.29■□□□□ 0.2
SQSTM1-210ENST00000506042 CITED4Q96RK1 184 aa16.29■□□□□ 0.2
SQSTM1-210ENST00000506042 C8orf4Q9NR00 106 aa16.29■□□□□ 0.2
SQSTM1-210ENST00000506042 WASHC3Q9Y3C0 194 aa16.29■□□□□ 0.2
SQSTM1-210ENST00000506042 A3GALT2U3KPV4 340 aa16.29■□□□□ 0.2
SQSTM1-210ENST00000506042 A0A0G2JLM5 398 aa16.28■□□□□ 0.2
SQSTM1-210ENST00000506042 SLC22A1O15245 554 aa16.28■□□□□ 0.2
SQSTM1-210ENST00000506042 HSPA12AO43301 675 aa16.28■□□□□ 0.2
SQSTM1-210ENST00000506042 SLURP1P55000 103 aa16.28■□□□□ 0.2
SQSTM1-210ENST00000506042 TPPP2P59282 170 aa16.28■□□□□ 0.2
SQSTM1-210ENST00000506042 GNMTQ14749 295 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms