RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 S100A14Q9HCY8 104 aa9.05□□□□□ -0.96
COL6A3-213ENST00000493475 PIPOXQ9P0Z9 390 aa9.05□□□□□ -0.96
COL6A3-213ENST00000493475 LSM4Q9Y4Z0 139 aaKnown RBP9.05□□□□□ -0.96
COL6A3-213ENST00000493475 EFCAB10A6NFE3 127 aa9.04□□□□□ -0.96
COL6A3-213ENST00000493475 OVOL1O14753 267 aa9.04□□□□□ -0.96
COL6A3-213ENST00000493475 YPEL1O60688 119 aa9.04□□□□□ -0.96
COL6A3-213ENST00000493475 SAP30O75446 220 aa9.04□□□□□ -0.96
COL6A3-213ENST00000493475 SC5DO75845 299 aa9.04□□□□□ -0.96
COL6A3-213ENST00000493475 MAS1P04201 325 aa9.04□□□□□ -0.96
COL6A3-213ENST00000493475 MC5RP33032 325 aa9.04□□□□□ -0.96
COL6A3-213ENST00000493475 F2RL1P55085 397 aa9.04□□□□□ -0.96
COL6A3-213ENST00000493475 CFHR3Q02985 330 aa9.04□□□□□ -0.96
COL6A3-213ENST00000493475 GABPB1Q06547 395 aaPredicted RBP9.04□□□□□ -0.96
COL6A3-213ENST00000493475 MORN2Q502X0 79 aa9.04□□□□□ -0.96
COL6A3-213ENST00000493475 LY6G6FQ5SQ64 297 aa9.04□□□□□ -0.96
COL6A3-213ENST00000493475 DMKNQ6E0U4 476 aaPredicted RBP9.04□□□□□ -0.96
COL6A3-213ENST00000493475 FAM71F2Q6NXP2 309 aa9.04□□□□□ -0.96
COL6A3-213ENST00000493475 GAPTQ8N292 157 aa9.04□□□□□ -0.96
COL6A3-213ENST00000493475 ZNF439Q8NDP4 499 aa9.04□□□□□ -0.96
COL6A3-213ENST00000493475 OR1L1Q8NH94 360 aa9.04□□□□□ -0.96
COL6A3-213ENST00000493475 APH1BQ8WW43 257 aa9.04□□□□□ -0.96
COL6A3-213ENST00000493475 CYGBQ8WWM9 190 aa9.04□□□□□ -0.96
COL6A3-213ENST00000493475 YPEL2Q96QA6 119 aa9.04□□□□□ -0.96
COL6A3-213ENST00000493475 CHMP1AQ9HD42 196 aaPredicted RBP9.04□□□□□ -0.96
COL6A3-213ENST00000493475 PALMDQ9NP74 551 aa9.04□□□□□ -0.96
COL6A3-213ENST00000493475 MGAT4AQ9UM21 535 aa9.04□□□□□ -0.96
COL6A3-213ENST00000493475 KMT2CQ8NEZ4 4911 aaKnown RBP9.03□□□□□ -0.96
COL6A3-213ENST00000493475 UBE2QL1A1L167 161 aa9.03□□□□□ -0.96
COL6A3-213ENST00000493475 ZNF736B4DX44 427 aaPredicted RBP9.03□□□□□ -0.96
COL6A3-213ENST00000493475 LINC01619G3V211 115 aa9.03□□□□□ -0.96
COL6A3-213ENST00000493475 RAB29O14966 203 aa9.03□□□□□ -0.96
COL6A3-213ENST00000493475 ATP6V0E1O15342 81 aa9.03□□□□□ -0.96
COL6A3-213ENST00000493475 SLC31A2O15432 143 aa9.03□□□□□ -0.96
COL6A3-213ENST00000493475 RBBP9O75884 186 aa9.03□□□□□ -0.96
COL6A3-213ENST00000493475 GSTP1P09211 210 aaKnown RBP9.03□□□□□ -0.96
COL6A3-213ENST00000493475 OR8U9P0C7N5 309 aa9.03□□□□□ -0.96
COL6A3-213ENST00000493475 RCC1P18754 421 aaPredicted RBP9.03□□□□□ -0.96
COL6A3-213ENST00000493475 RAB9AP51151 201 aa9.03□□□□□ -0.96
COL6A3-213ENST00000493475 SMN1Q16637 294 aaKnown RBP9.03□□□□□ -0.96
COL6A3-213ENST00000493475 C5orf64Q2M2E5 130 aa9.03□□□□□ -0.96
COL6A3-213ENST00000493475 NKAPLQ5M9Q1 402 aa9.03□□□□□ -0.96
COL6A3-213ENST00000493475 GLT8D1Q68CQ7 371 aa9.03□□□□□ -0.96
COL6A3-213ENST00000493475 ZNF660Q6AZW8 331 aaPredicted RBP9.03□□□□□ -0.96
COL6A3-213ENST00000493475 XAF1Q6GPH4 301 aa9.03□□□□□ -0.96
COL6A3-213ENST00000493475 MOB1BQ7L9L4 216 aa9.03□□□□□ -0.96
COL6A3-213ENST00000493475 ZNF491Q8N8L2 437 aa9.03□□□□□ -0.96
COL6A3-213ENST00000493475 IL1F10Q8WWZ1 152 aa9.03□□□□□ -0.96
COL6A3-213ENST00000493475 FLYWCH2Q96CP2 140 aaKnown RBP9.03□□□□□ -0.96
COL6A3-213ENST00000493475 OR14A2Q96R54 314 aa9.03□□□□□ -0.96
COL6A3-213ENST00000493475 OR4C12Q96R67 309 aa9.03□□□□□ -0.96
COL6A3-213ENST00000493475 ELOVL1Q9BW60 279 aa9.03□□□□□ -0.96
COL6A3-213ENST00000493475 RIMS4Q9H426 269 aaPredicted RBP9.03□□□□□ -0.96
COL6A3-213ENST00000493475 BANF2Q9H503 90 aa9.03□□□□□ -0.96
COL6A3-213ENST00000493475 ISYNA1Q9NPH2 558 aa9.03□□□□□ -0.96
COL6A3-213ENST00000493475 MBNL3Q9NUK0 354 aaKnown RBP9.03□□□□□ -0.96
COL6A3-213ENST00000493475 ZNF581Q9P0T4 197 aa9.03□□□□□ -0.96
COL6A3-213ENST00000493475 FOXA2Q9Y261 457 aaPredicted RBP9.03□□□□□ -0.96
COL6A3-213ENST00000493475 WSB1Q9Y6I7 421 aa9.03□□□□□ -0.96
COL6A3-213ENST00000493475 A0A1W2PP11 408 aa9.02□□□□□ -0.97
COL6A3-213ENST00000493475 OR5H14A6NHG9 310 aa9.02□□□□□ -0.97
COL6A3-213ENST00000493475 H7C2Y5 167 aa9.02□□□□□ -0.97
COL6A3-213ENST00000493475 WBP4O75554 376 aaKnown RBP9.02□□□□□ -0.97
COL6A3-213ENST00000493475 CD1AP06126 327 aa9.02□□□□□ -0.97
COL6A3-213ENST00000493475 PPIFP30405 207 aaKnown RBP9.02□□□□□ -0.97
COL6A3-213ENST00000493475 PPP1CCP36873 323 aaKnown RBP9.02□□□□□ -0.97
COL6A3-213ENST00000493475 ZNF134P52741 427 aa9.02□□□□□ -0.97
COL6A3-213ENST00000493475 PITPNAQ00169 270 aa9.02□□□□□ -0.97
COL6A3-213ENST00000493475 ECSCRQ19T08 205 aa9.02□□□□□ -0.97
COL6A3-213ENST00000493475 C6orf141Q5SZD1 244 aa9.02□□□□□ -0.97
COL6A3-213ENST00000493475 PACRGLQ8N7B6 248 aa9.02□□□□□ -0.97
COL6A3-213ENST00000493475 NPBQ8NG41 125 aa9.02□□□□□ -0.97
COL6A3-213ENST00000493475 OR13C5Q8NGS8 318 aa9.02□□□□□ -0.97
COL6A3-213ENST00000493475 MYOZ3Q8TDC0 251 aa9.02□□□□□ -0.97
COL6A3-213ENST00000493475 EDARADDQ8WWZ3 215 aa9.02□□□□□ -0.97
COL6A3-213ENST00000493475 Q96M66 194 aa9.02□□□□□ -0.97
COL6A3-213ENST00000493475 ASCL2Q99929 193 aa9.02□□□□□ -0.97
COL6A3-213ENST00000493475 MRPL20Q9BYC9 149 aaKnown RBP9.02□□□□□ -0.97
COL6A3-213ENST00000493475 ANKRD60Q9BZ19 345 aa9.02□□□□□ -0.97
COL6A3-213ENST00000493475 VCXQ9H320 206 aa9.02□□□□□ -0.97
COL6A3-213ENST00000493475 CNOT2Q9NZN8 540 aaKnown RBP9.02□□□□□ -0.97
COL6A3-213ENST00000493475 SCOCQ9UIL1 159 aa9.02□□□□□ -0.97
COL6A3-213ENST00000493475 STAB2Q8WWQ8 2551 aa9.01□□□□□ -0.97
COL6A3-213ENST00000493475 TRAV8-7A0A075B6U6 113 aa9.01□□□□□ -0.97
COL6A3-213ENST00000493475 TRBV5-7A0A0A0MS05 114 aa9.01□□□□□ -0.97
COL6A3-213ENST00000493475 A0A1W2PN81 502 aa9.01□□□□□ -0.97
COL6A3-213ENST00000493475 A0A1W2PPK0 400 aa9.01□□□□□ -0.97
COL6A3-213ENST00000493475 I3L521 148 aa9.01□□□□□ -0.97
COL6A3-213ENST00000493475 HSPA12AO43301 675 aa9.01□□□□□ -0.97
COL6A3-213ENST00000493475 IGLV1-40P01703 118 aa9.01□□□□□ -0.97
COL6A3-213ENST00000493475 CELP19835 753 aa9.01□□□□□ -0.97
COL6A3-213ENST00000493475 BLVRBP30043 206 aaPredicted RBP9.01□□□□□ -0.97
COL6A3-213ENST00000493475 CHRNA7P36544 502 aa9.01□□□□□ -0.97
COL6A3-213ENST00000493475 WNT4P56705 351 aa9.01□□□□□ -0.97
COL6A3-213ENST00000493475 ADARB1P78563 741 aaKnown RBP9.01□□□□□ -0.97
COL6A3-213ENST00000493475 ST3GAL4Q11206 333 aa9.01□□□□□ -0.97
COL6A3-213ENST00000493475 CBX3Q13185 183 aa9.01□□□□□ -0.97
COL6A3-213ENST00000493475 ZNF833PQ6ZTB9 187 aa9.01□□□□□ -0.97
COL6A3-213ENST00000493475 C8orf59Q8N0T1 100 aaPredicted RBP9.01□□□□□ -0.97
COL6A3-213ENST00000493475 DHRSXQ8N5I4 330 aa9.01□□□□□ -0.97
COL6A3-213ENST00000493475 MS4A15Q8N5U1 240 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms