RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 ZNF554Q86TJ5 538 aa14.38□□□□□ -0.11
COL9A3-214ENST00000490398 IL1F10Q8WWZ1 152 aa14.38□□□□□ -0.11
COL9A3-214ENST00000490398 ABHD14AQ9BUJ0 271 aa14.38□□□□□ -0.11
COL9A3-214ENST00000490398 RAB9BQ9NP90 201 aa14.38□□□□□ -0.11
COL9A3-214ENST00000490398 HSF4Q9ULV5 492 aa14.38□□□□□ -0.11
COL9A3-214ENST00000490398 TRBV6-6A0A0A6YYG2 114 aa14.37□□□□□ -0.11
COL9A3-214ENST00000490398 CLEC2LP0C7M8 214 aa14.37□□□□□ -0.11
COL9A3-214ENST00000490398 GALP22466 123 aa14.37□□□□□ -0.11
COL9A3-214ENST00000490398 IL3RAP26951 378 aa14.37□□□□□ -0.11
COL9A3-214ENST00000490398 PSMD7P51665 324 aa14.37□□□□□ -0.11
COL9A3-214ENST00000490398 TGIF2LXQ8IUE1 241 aa14.37□□□□□ -0.11
COL9A3-214ENST00000490398 IZUMO1Q8IYV9 350 aa14.37□□□□□ -0.11
COL9A3-214ENST00000490398 DTX3Q8N9I9 347 aa14.37□□□□□ -0.11
COL9A3-214ENST00000490398 OR5AU1Q8NGC0 362 aa14.37□□□□□ -0.11
COL9A3-214ENST00000490398 FCGR1BQ92637 280 aa14.37□□□□□ -0.11
COL9A3-214ENST00000490398 GALMQ96C23 342 aa14.37□□□□□ -0.11
COL9A3-214ENST00000490398 PLSCR3Q9NRY6 295 aa14.37□□□□□ -0.11
COL9A3-214ENST00000490398 OR1A1Q9P1Q5 309 aa14.37□□□□□ -0.11
COL9A3-214ENST00000490398 RAB22AQ9UL26 194 aa14.37□□□□□ -0.11
COL9A3-214ENST00000490398 STUB1Q9UNE7 303 aa14.37□□□□□ -0.11
COL9A3-214ENST00000490398 TET2Q6N021 2002 aaPredicted RBP14.37□□□□□ -0.11
COL9A3-214ENST00000490398 IGKV1-6A0A0C4DH72 117 aa14.36□□□□□ -0.11
COL9A3-214ENST00000490398 ST8SIA5O15466 376 aa14.36□□□□□ -0.11
COL9A3-214ENST00000490398 KCNAB3O43448 404 aa14.36□□□□□ -0.11
COL9A3-214ENST00000490398 YPEL1O60688 119 aa14.36□□□□□ -0.11
COL9A3-214ENST00000490398 PEX14O75381 377 aa14.36□□□□□ -0.11
COL9A3-214ENST00000490398 SCTP09683 121 aa14.36□□□□□ -0.11
COL9A3-214ENST00000490398 FGF9P31371 208 aaPredicted RBP14.36□□□□□ -0.11
COL9A3-214ENST00000490398 HLA-DRB3P79483 266 aa14.36□□□□□ -0.11
COL9A3-214ENST00000490398 OR56B1Q8NGI3 324 aa14.36□□□□□ -0.11
COL9A3-214ENST00000490398 RITA1Q96K30 269 aa14.36□□□□□ -0.11
COL9A3-214ENST00000490398 NOL4LQ96MY1 436 aaPredicted RBP14.36□□□□□ -0.11
COL9A3-214ENST00000490398 YPEL2Q96QA6 119 aa14.36□□□□□ -0.11
COL9A3-214ENST00000490398 MRPL20Q9BYC9 149 aaKnown RBP14.36□□□□□ -0.11
COL9A3-214ENST00000490398 IFI27L2Q9H2X8 130 aa14.36□□□□□ -0.11
COL9A3-214ENST00000490398 Q9N2K0 584 aa14.36□□□□□ -0.11
COL9A3-214ENST00000490398 LINC00527Q9UJ94 153 aa14.36□□□□□ -0.11
COL9A3-214ENST00000490398 ELF5Q9UKW6 265 aaPredicted RBP14.36□□□□□ -0.11
COL9A3-214ENST00000490398 RAB27BO00194 218 aa14.35□□□□□ -0.11
COL9A3-214ENST00000490398 GADD45AP24522 165 aa14.35□□□□□ -0.11
COL9A3-214ENST00000490398 CD1BP29016 333 aa14.35□□□□□ -0.11
COL9A3-214ENST00000490398 KCTD21Q4G0X4 260 aa14.35□□□□□ -0.11
COL9A3-214ENST00000490398 STEAP3Q658P3 488 aa14.35□□□□□ -0.11
COL9A3-214ENST00000490398 CENPVQ7Z7K6 275 aaPredicted RBP14.35□□□□□ -0.11
COL9A3-214ENST00000490398 Q8N9W7 124 aa14.35□□□□□ -0.11
COL9A3-214ENST00000490398 CMSS1Q9BQ75 279 aaKnown RBP14.35□□□□□ -0.11
COL9A3-214ENST00000490398 CHCHD6Q9BRQ6 235 aa14.35□□□□□ -0.11
COL9A3-214ENST00000490398 ABRACLQ9P1F3 81 aa14.35□□□□□ -0.11
COL9A3-214ENST00000490398 SAA2-SAA4A0A096LPE2 208 aa14.34□□□□□ -0.11
COL9A3-214ENST00000490398 A0A1W2PRX2 142 aa14.34□□□□□ -0.11
COL9A3-214ENST00000490398 M0QZK8 103 aa14.34□□□□□ -0.11
COL9A3-214ENST00000490398 FGF16O43320 207 aa14.34□□□□□ -0.11
COL9A3-214ENST00000490398 WIPF1O43516 503 aa14.34□□□□□ -0.11
COL9A3-214ENST00000490398 LANCL1O43813 399 aa14.34□□□□□ -0.11
COL9A3-214ENST00000490398 SAA2P0DJI9 122 aaPredicted RBP14.34□□□□□ -0.11
COL9A3-214ENST00000490398 GNB3P16520 340 aa14.34□□□□□ -0.11
COL9A3-214ENST00000490398 F2RL1P55085 397 aa14.34□□□□□ -0.11
COL9A3-214ENST00000490398 CD83Q01151 205 aa14.34□□□□□ -0.11
COL9A3-214ENST00000490398 LSAMPQ13449 338 aa14.34□□□□□ -0.11
COL9A3-214ENST00000490398 LY6G6FQ5SQ64 297 aa14.34□□□□□ -0.11
COL9A3-214ENST00000490398 ZNF833PQ6ZTB9 187 aa14.34□□□□□ -0.11
COL9A3-214ENST00000490398 OR10R2Q8NGX6 335 aa14.34□□□□□ -0.11
COL9A3-214ENST00000490398 OR2T10Q8NGZ9 312 aa14.34□□□□□ -0.11
COL9A3-214ENST00000490398 MAFIPQ8WZ33 124 aa14.34□□□□□ -0.11
COL9A3-214ENST00000490398 NABP2Q9BQ15 211 aa14.34□□□□□ -0.11
COL9A3-214ENST00000490398 ZNF251Q9BRH9 671 aa14.34□□□□□ -0.11
COL9A3-214ENST00000490398 C12orf4Q9NQ89 552 aa14.34□□□□□ -0.11
COL9A3-214ENST00000490398 SSR3Q9UNL2 185 aa14.34□□□□□ -0.11
COL9A3-214ENST00000490398 A0A075B6Q4 140 aa14.33□□□□□ -0.12
COL9A3-214ENST00000490398 NCBP2LA6PVI3 153 aaKnown RBP14.33□□□□□ -0.12
COL9A3-214ENST00000490398 MFNGO00587 321 aa14.33□□□□□ -0.12
COL9A3-214ENST00000490398 MOSP00540 346 aa14.33□□□□□ -0.12
COL9A3-214ENST00000490398 CD3GP09693 182 aa14.33□□□□□ -0.12
COL9A3-214ENST00000490398 CD36P16671 472 aa14.33□□□□□ -0.12
COL9A3-214ENST00000490398 SDC2P34741 201 aa14.33□□□□□ -0.12
COL9A3-214ENST00000490398 TGFBR1P36897 503 aa14.33□□□□□ -0.12
COL9A3-214ENST00000490398 MXD1Q05195 221 aa14.33□□□□□ -0.12
COL9A3-214ENST00000490398 RPL39P5Q59GN2 51 aa14.33□□□□□ -0.12
COL9A3-214ENST00000490398 MOB1BQ7L9L4 216 aa14.33□□□□□ -0.12
COL9A3-214ENST00000490398 ZNF329Q86UD4 541 aa14.33□□□□□ -0.12
COL9A3-214ENST00000490398 C1QL4Q86Z23 238 aa14.33□□□□□ -0.12
COL9A3-214ENST00000490398 OR2AK2Q8NG84 335 aa14.33□□□□□ -0.12
COL9A3-214ENST00000490398 RAB3CQ96E17 227 aa14.33□□□□□ -0.12
COL9A3-214ENST00000490398 ABHD14BQ96IU4 210 aa14.33□□□□□ -0.12
COL9A3-214ENST00000490398 CENPOQ9BU64 300 aa14.33□□□□□ -0.12
COL9A3-214ENST00000490398 RIMS4Q9H426 269 aaPredicted RBP14.33□□□□□ -0.12
COL9A3-214ENST00000490398 SLC23A1Q9UHI7 598 aa14.33□□□□□ -0.12
COL9A3-214ENST00000490398 LOC100506127A0A0U1RQW1 187 aa14.32□□□□□ -0.12
COL9A3-214ENST00000490398 NOTOA8MTQ0 251 aa14.32□□□□□ -0.12
COL9A3-214ENST00000490398 SNRPBP14678 240 aaKnown RBP14.32□□□□□ -0.12
COL9A3-214ENST00000490398 RAB6AP20340 208 aa14.32□□□□□ -0.12
COL9A3-214ENST00000490398 CNTFRP26992 372 aa14.32□□□□□ -0.12
COL9A3-214ENST00000490398 NDUFA11Q86Y39 141 aa14.32□□□□□ -0.12
COL9A3-214ENST00000490398 S1PR3Q99500 378 aa14.32□□□□□ -0.12
COL9A3-214ENST00000490398 AGMATQ9BSE5 352 aa14.32□□□□□ -0.12
COL9A3-214ENST00000490398 C11orf54Q9H0W9 315 aaPredicted RBP14.32□□□□□ -0.12
COL9A3-214ENST00000490398 ZNF230Q9UIE0 474 aaPredicted RBP14.32□□□□□ -0.12
COL9A3-214ENST00000490398 DAPK2Q9UIK4 370 aa14.32□□□□□ -0.12
COL9A3-214ENST00000490398 IGKV1D-8A0A087WSZ0 117 aa14.31□□□□□ -0.12
COL9A3-214ENST00000490398 TXNL1O43396 289 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms