RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 CD1BP29016 333 aa16.78■□□□□ 0.28
LIME1-207ENST00000489212 CD83Q01151 205 aa16.78■□□□□ 0.28
LIME1-207ENST00000489212 PLAC9Q5JTB6 97 aa16.78■□□□□ 0.28
LIME1-207ENST00000489212 CENPVQ7Z7K6 275 aaPredicted RBP16.78■□□□□ 0.28
LIME1-207ENST00000489212 NR2C2APQ86WQ0 139 aa16.78■□□□□ 0.28
LIME1-207ENST00000489212 NDUFA11Q86Y39 141 aa16.78■□□□□ 0.28
LIME1-207ENST00000489212 SETD6Q8TBK2 473 aa16.78■□□□□ 0.28
LIME1-207ENST00000489212 YPEL2Q96QA6 119 aa16.78■□□□□ 0.28
LIME1-207ENST00000489212 PECRQ9BY49 303 aa16.78■□□□□ 0.28
LIME1-207ENST00000489212 A0A0B4J203 849 aa16.77■□□□□ 0.28
LIME1-207ENST00000489212 IFITM5A6NNB3 132 aa16.77■□□□□ 0.28
LIME1-207ENST00000489212 MYL9P24844 172 aa16.77■□□□□ 0.28
LIME1-207ENST00000489212 LY6G6FQ5SQ64 297 aa16.77■□□□□ 0.28
LIME1-207ENST00000489212 ZNF773Q6PK81 442 aa16.77■□□□□ 0.28
LIME1-207ENST00000489212 OR2T10Q8NGZ9 312 aa16.77■□□□□ 0.28
LIME1-207ENST00000489212 IL1F10Q8WWZ1 152 aa16.77■□□□□ 0.28
LIME1-207ENST00000489212 FCGR1BQ92637 280 aa16.77■□□□□ 0.28
LIME1-207ENST00000489212 TXNL1O43396 289 aa16.76■□□□□ 0.27
LIME1-207ENST00000489212 LANCL1O43813 399 aa16.76■□□□□ 0.27
LIME1-207ENST00000489212 RAB3BP20337 219 aa16.76■□□□□ 0.27
LIME1-207ENST00000489212 DEFA6Q01524 100 aa16.76■□□□□ 0.27
LIME1-207ENST00000489212 MOGAT2Q3SYC2 334 aa16.76■□□□□ 0.27
LIME1-207ENST00000489212 MOB1BQ7L9L4 216 aa16.76■□□□□ 0.27
LIME1-207ENST00000489212 OR56B1Q8NGI3 324 aa16.76■□□□□ 0.27
LIME1-207ENST00000489212 RIMS4Q9H426 269 aaPredicted RBP16.76■□□□□ 0.27
LIME1-207ENST00000489212 PLSCR3Q9NRY6 295 aa16.76■□□□□ 0.27
LIME1-207ENST00000489212 TXNL4BQ9NX01 149 aaKnown RBP16.76■□□□□ 0.27
LIME1-207ENST00000489212 ABRACLQ9P1F3 81 aa16.76■□□□□ 0.27
LIME1-207ENST00000489212 RAB22AQ9UL26 194 aa16.76■□□□□ 0.27
LIME1-207ENST00000489212 PLXNB1O43157 2135 aa16.76■□□□□ 0.27
LIME1-207ENST00000489212 PRKDCP78527 4128 aaKnown RBP16.76■□□□□ 0.27
LIME1-207ENST00000489212 SMIM30A4D0T7 59 aa16.75■□□□□ 0.27
LIME1-207ENST00000489212 RGS11O94810 467 aa16.75■□□□□ 0.27
LIME1-207ENST00000489212 MOSP00540 346 aa16.75■□□□□ 0.27
LIME1-207ENST00000489212 OPN1MWP04001 364 aa16.75■□□□□ 0.27
LIME1-207ENST00000489212 OPN1MW2P0DN77 364 aa16.75■□□□□ 0.27
LIME1-207ENST00000489212 OPN1MW3P0DN78 364 aa16.75■□□□□ 0.27
LIME1-207ENST00000489212 OR3A3P47888 321 aa16.75■□□□□ 0.27
LIME1-207ENST00000489212 Q8N9W7 124 aa16.75■□□□□ 0.27
LIME1-207ENST00000489212 NOL4LQ96MY1 436 aaPredicted RBP16.75■□□□□ 0.27
LIME1-207ENST00000489212 PARP12Q9H0J9 701 aaKnown RBP16.75■□□□□ 0.27
LIME1-207ENST00000489212 IFI27L2Q9H2X8 130 aa16.75■□□□□ 0.27
LIME1-207ENST00000489212 KCNK7Q9Y2U2 307 aa16.75■□□□□ 0.27
LIME1-207ENST00000489212 LINC01548A6NM66 108 aa16.74■□□□□ 0.27
LIME1-207ENST00000489212 NCBP2LA6PVI3 153 aaKnown RBP16.74■□□□□ 0.27
LIME1-207ENST00000489212 FGF9P31371 208 aaPredicted RBP16.74■□□□□ 0.27
LIME1-207ENST00000489212 HLA-DRB3P79483 266 aa16.74■□□□□ 0.27
LIME1-207ENST00000489212 LSAMPQ13449 338 aa16.74■□□□□ 0.27
LIME1-207ENST00000489212 OR2AK2Q8NG84 335 aa16.74■□□□□ 0.27
LIME1-207ENST00000489212 R3HDM4Q96D70 268 aa16.74■□□□□ 0.27
LIME1-207ENST00000489212 MRPL20Q9BYC9 149 aaKnown RBP16.74■□□□□ 0.27
LIME1-207ENST00000489212 Q9N2K0 584 aa16.74■□□□□ 0.27
LIME1-207ENST00000489212 C12orf4Q9NQ89 552 aa16.74■□□□□ 0.27
LIME1-207ENST00000489212 STUB1Q9UNE7 303 aa16.74■□□□□ 0.27
LIME1-207ENST00000489212 SAA2-SAA4A0A096LPE2 208 aa16.73■□□□□ 0.27
LIME1-207ENST00000489212 A0A1W2PRX2 142 aa16.73■□□□□ 0.27
LIME1-207ENST00000489212 ST8SIA5O15466 376 aa16.73■□□□□ 0.27
LIME1-207ENST00000489212 IGHG2P01859 326 aa16.73■□□□□ 0.27
LIME1-207ENST00000489212 SAA2P0DJI9 122 aaPredicted RBP16.73■□□□□ 0.27
LIME1-207ENST00000489212 SLC2A2P11168 524 aaPredicted RBP16.73■□□□□ 0.27
LIME1-207ENST00000489212 RANBP1P43487 201 aa16.73■□□□□ 0.27
LIME1-207ENST00000489212 F2RL1P55085 397 aa16.73■□□□□ 0.27
LIME1-207ENST00000489212 ZNF833PQ6ZTB9 187 aa16.73■□□□□ 0.27
LIME1-207ENST00000489212 C1QL4Q86Z23 238 aa16.73■□□□□ 0.27
LIME1-207ENST00000489212 CMSS1Q9BQ75 279 aaKnown RBP16.73■□□□□ 0.27
LIME1-207ENST00000489212 OR1A1Q9P1Q5 309 aa16.73■□□□□ 0.27
LIME1-207ENST00000489212 LINC00527Q9UJ94 153 aa16.73■□□□□ 0.27
LIME1-207ENST00000489212 TCRBV4S1A1TA0A5B7 111 aa16.72■□□□□ 0.27
LIME1-207ENST00000489212 SCTP09683 121 aa16.72■□□□□ 0.27
LIME1-207ENST00000489212 ZNF329Q86UD4 541 aa16.72■□□□□ 0.27
LIME1-207ENST00000489212 RAB3CQ96E17 227 aa16.72■□□□□ 0.27
LIME1-207ENST00000489212 S1PR3Q99500 378 aa16.72■□□□□ 0.27
LIME1-207ENST00000489212 NABP2Q9BQ15 211 aa16.72■□□□□ 0.27
LIME1-207ENST00000489212 OR51E2Q9H255 320 aa16.72■□□□□ 0.27
LIME1-207ENST00000489212 IGKV1-6A0A0C4DH72 117 aa16.71■□□□□ 0.27
LIME1-207ENST00000489212 PSMB11A5LHX3 300 aa16.71■□□□□ 0.27
LIME1-207ENST00000489212 SERPINE3A8MV23 424 aa16.71■□□□□ 0.27
LIME1-207ENST00000489212 RAB27BO00194 218 aa16.71■□□□□ 0.27
LIME1-207ENST00000489212 RAB6AP20340 208 aa16.71■□□□□ 0.27
LIME1-207ENST00000489212 KCTD21Q4G0X4 260 aa16.71■□□□□ 0.27
LIME1-207ENST00000489212 SLC35E3Q7Z769 313 aa16.71■□□□□ 0.27
LIME1-207ENST00000489212 OR4F17Q8NGA8 305 aa16.71■□□□□ 0.27
LIME1-207ENST00000489212 OR4X2Q8NGF9 303 aa16.71■□□□□ 0.27
LIME1-207ENST00000489212 OR10R2Q8NGX6 335 aa16.71■□□□□ 0.27
LIME1-207ENST00000489212 RITA1Q96K30 269 aa16.71■□□□□ 0.27
LIME1-207ENST00000489212 OR4F4Q96R69 305 aa16.71■□□□□ 0.27
LIME1-207ENST00000489212 ZNF251Q9BRH9 671 aa16.71■□□□□ 0.27
LIME1-207ENST00000489212 ABCG5Q9H222 651 aa16.71■□□□□ 0.27
LIME1-207ENST00000489212 LIN7CQ9NUP9 197 aaKnown RBP16.71■□□□□ 0.27
LIME1-207ENST00000489212 SLC23A1Q9UHI7 598 aa16.71■□□□□ 0.27
LIME1-207ENST00000489212 MGAT4AQ9UM21 535 aa16.71■□□□□ 0.27
LIME1-207ENST00000489212 G3V4G9 280 aa16.7■□□□□ 0.26
LIME1-207ENST00000489212 GNB3P16520 340 aa16.7■□□□□ 0.26
LIME1-207ENST00000489212 GPR12P47775 334 aa16.7■□□□□ 0.26
LIME1-207ENST00000489212 NEDD8Q15843 81 aa16.7■□□□□ 0.26
LIME1-207ENST00000489212 FAM71E2Q8N5Q1 922 aa16.7■□□□□ 0.26
LIME1-207ENST00000489212 AGMATQ9BSE5 352 aa16.7■□□□□ 0.26
LIME1-207ENST00000489212 RNF167Q9H6Y7 350 aa16.7■□□□□ 0.26
LIME1-207ENST00000489212 SSR3Q9UNL2 185 aa16.7■□□□□ 0.26
LIME1-207ENST00000489212 TSSC4Q9Y5U2 329 aaPredicted RBP16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms