RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 OR11A1Q9GZK7 315 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 SLC25A31Q9H0C2 315 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 OR51B6Q9H340 312 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 AUNIPQ9H7T9 357 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 KLRF1Q9NZS2 232 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 OR5V1Q9UGF6 321 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 FZR1Q9UM11 496 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 C14orf166Q9Y224 244 aaKnown RBP4.13□□□□□ -1.75
USP40-213ENST00000483216 MRPS33Q9Y291 106 aaKnown RBP4.13□□□□□ -1.75
USP40-213ENST00000483216 ASF1AQ9Y294 204 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 WDR45Q9Y484 360 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 DNAH12Q6ZR08 3092 aa4.13□□□□□ -1.75
USP40-213ENST00000483216 TRAV14DV4A0A0A6YYC5 116 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 TSPAN11A1L157 253 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 TLCD2A6NGC4 264 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 ZFP92A6NM28 416 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 CPSF4LA6NMK7 179 aaKnown RBP4.12□□□□□ -1.75
USP40-213ENST00000483216 CEACAM18A8MTB9 384 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 A8MWP6 167 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 HSBP1L1C9JCN9 74 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 SOX15O60248 233 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 ICOSLGO75144 302 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 SERF1AO75920 110 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 AKR7A3O95154 331 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 NSA2O95478 260 aaKnown RBP4.12□□□□□ -1.75
USP40-213ENST00000483216 ACTL6AO96019 429 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 CXCL10P02778 98 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 CD3DP04234 171 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 MUC1P15941 1255 aaPredicted RBP4.12□□□□□ -1.75
USP40-213ENST00000483216 OR10J1P30954 320 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 ARR3P36575 388 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 AQP2P41181 271 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 SSR2P43308 183 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 SLC11A1P49279 550 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 NDUFA6P56556 154 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 CLDN12P56749 244 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 OR12D2P58182 307 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 RPS20P60866 119 aaKnown RBP4.12□□□□□ -1.75
USP40-213ENST00000483216 UBE2KP61086 200 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 TBPL1P62380 186 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 SLC35A1P78382 337 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 TNFRSF9Q07011 255 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 GNMTQ14749 295 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 CHRFAM7AQ494W8 412 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 SCGB2B2Q4G0G5 96 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 KHDC3LQ587J8 217 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 VAX1Q5SQQ9 334 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 COL5A1-AS1Q5SY13 56 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 CYB5R2Q6BCY4 276 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 KCNIP4Q6PIL6 250 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 DNM1P34Q6PK57 102 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 DEGS2Q6QHC5 323 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 Q7L0L9 218 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 TMEM183AQ8IXX5 376 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 CDRT4Q8N9R6 151 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 OR4K14Q8NGD5 310 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 OR10D4PQ8NGN7 298 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 TSEN15Q8WW01 171 aaKnown RBP4.12□□□□□ -1.75
USP40-213ENST00000483216 EMG1Q92979 244 aaKnown RBP4.12□□□□□ -1.75
USP40-213ENST00000483216 NEIL2Q969S2 332 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 FAM3DQ96BQ1 224 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 TM4SF18Q96CE8 201 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 MS4A6EQ96DS6 147 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 PELI1Q96FA3 418 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 AKR1E2Q96JD6 320 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 PACRGQ96M98 296 aaPredicted RBP4.12□□□□□ -1.75
USP40-213ENST00000483216 AMDHD1Q96NU7 426 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 OR5B12Q96R08 314 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 CLCC1Q96S66 551 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 GPX7Q96SL4 187 aaPredicted RBP4.12□□□□□ -1.75
USP40-213ENST00000483216 IMMP2LQ96T52 175 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 SPIN2AQ99865 258 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 SPIN2BQ9BPZ2 258 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 ZNF2Q9BSG1 426 aaPredicted RBP4.12□□□□□ -1.75
USP40-213ENST00000483216 C1QTNF6Q9BXI9 259 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 PLA2G12AQ9BZM1 189 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 SIRPDQ9H106 197 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 ZNF702PQ9H963 129 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 ISG20L2Q9H9L3 353 aaKnown RBP4.12□□□□□ -1.75
USP40-213ENST00000483216 FN3KRPQ9HA64 309 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 ASCL3Q9NQ33 180 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 DOK5Q9P104 306 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 CHRNA9Q9UGM1 479 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 LAMP5Q9UJQ1 280 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 ZNF443Q9Y2A4 671 aaPredicted RBP4.12□□□□□ -1.75
USP40-213ENST00000483216 ZNF337Q9Y3M9 751 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 CHD5Q8TDI0 1954 aa4.12□□□□□ -1.75
USP40-213ENST00000483216 PDE4DIPQ5VU43 2346 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 TRBV24-1A0A075B6N3 115 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 A0A0D9SEW6 157 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 A0A1B0GV90 55 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 SLC5A10A0PJK1 596 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 C20orf202A1L168 122 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 A6NIZ1 184 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 FAM166BA8MTA8 275 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 FTCDNL1E5RQL4 147 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 PPIHO43447 177 aaKnown RBP4.11□□□□□ -1.75
USP40-213ENST00000483216 OR1F1O43749 312 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 CA11O75493 328 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 AHSA1O95433 338 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms