RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 CDCA4Q9BXL8 241 aa2.75□□□□□ -1.97
UPF3B-203ENST00000478840 DERL2Q9GZP9 239 aa2.75□□□□□ -1.97
UPF3B-203ENST00000478840 EIF5A2Q9GZV4 153 aaKnown RBP2.75□□□□□ -1.97
UPF3B-203ENST00000478840 KCNIP2Q9NS61 270 aa2.75□□□□□ -1.97
UPF3B-203ENST00000478840 OR51B4Q9Y5P0 310 aa2.75□□□□□ -1.97
UPF3B-203ENST00000478840 U3KQK5 164 aa2.75□□□□□ -1.97
UPF3B-203ENST00000478840 PLB1Q6P1J6 1458 aa2.75□□□□□ -1.97
UPF3B-203ENST00000478840 ZBED9Q6R2W3 1325 aa2.74□□□□□ -1.97
UPF3B-203ENST00000478840 IGKV1D-37A0A075B6S9 117 aa2.74□□□□□ -1.97
UPF3B-203ENST00000478840 A6NED7 52 aa2.74□□□□□ -1.97
UPF3B-203ENST00000478840 LECT2O14960 151 aa2.74□□□□□ -1.97
UPF3B-203ENST00000478840 IGLV3-27P01718 113 aa2.74□□□□□ -1.97
UPF3B-203ENST00000478840 OPN1SWP03999 348 aa2.74□□□□□ -1.97
UPF3B-203ENST00000478840 OR13C7P0DN81 318 aa2.74□□□□□ -1.97
UPF3B-203ENST00000478840 CXCL2P19875 107 aa2.74□□□□□ -1.97
UPF3B-203ENST00000478840 CXCL3P19876 107 aa2.74□□□□□ -1.97
UPF3B-203ENST00000478840 CDK2P24941 298 aa2.74□□□□□ -1.97
UPF3B-203ENST00000478840 HSPA9P38646 679 aaKnown RBP2.74□□□□□ -1.97
UPF3B-203ENST00000478840 OR1E2P47887 323 aa2.74□□□□□ -1.97
UPF3B-203ENST00000478840 HPCAP84074 193 aa2.74□□□□□ -1.97
UPF3B-203ENST00000478840 PDGFRLQ15198 375 aa2.74□□□□□ -1.97
UPF3B-203ENST00000478840 OR8G1Q15617 311 aa2.74□□□□□ -1.97
UPF3B-203ENST00000478840 MAPK14Q16539 360 aa2.74□□□□□ -1.97
UPF3B-203ENST00000478840 SPIN4Q56A73 249 aa2.74□□□□□ -1.97
UPF3B-203ENST00000478840 AMMECR1LQ6DCA0 310 aa2.74□□□□□ -1.97
UPF3B-203ENST00000478840 LYPD1Q8N2G4 141 aa2.74□□□□□ -1.97
UPF3B-203ENST00000478840 ZNF565Q8N9K5 539 aa2.74□□□□□ -1.97
UPF3B-203ENST00000478840 CD200R1Q8TD46 325 aa2.74□□□□□ -1.97
UPF3B-203ENST00000478840 TMBIM1Q969X1 311 aa2.74□□□□□ -1.97
UPF3B-203ENST00000478840 MED28Q9H204 178 aa2.74□□□□□ -1.97
UPF3B-203ENST00000478840 MAP1LC3AQ9H492 121 aa2.74□□□□□ -1.97
UPF3B-203ENST00000478840 SLC23A2Q9UGH3 650 aa2.74□□□□□ -1.97
UPF3B-203ENST00000478840 MRPS16Q9Y3D3 137 aaKnown RBP2.74□□□□□ -1.97
UPF3B-203ENST00000478840 SPATA31E1Q6ZUB1 1445 aa2.74□□□□□ -1.97
UPF3B-203ENST00000478840 NID2Q14112 1375 aa2.74□□□□□ -1.97
UPF3B-203ENST00000478840 A0A1B0GU33 70 aa2.73□□□□□ -1.97
UPF3B-203ENST00000478840 D6RAR5 112 aa2.73□□□□□ -1.97
UPF3B-203ENST00000478840 RTL8CO15255 209 aa2.73□□□□□ -1.97
UPF3B-203ENST00000478840 ISG15P05161 165 aa2.73□□□□□ -1.97
UPF3B-203ENST00000478840 OR12D1P0DN82 309 aa2.73□□□□□ -1.97
UPF3B-203ENST00000478840 ORM2P19652 201 aa2.73□□□□□ -1.97
UPF3B-203ENST00000478840 PRPS1L1P21108 318 aa2.73□□□□□ -1.97
UPF3B-203ENST00000478840 CRABP2P29373 138 aa2.73□□□□□ -1.97
UPF3B-203ENST00000478840 OPRM1P35372 400 aa2.73□□□□□ -1.97
UPF3B-203ENST00000478840 NKX2-5P52952 324 aaPredicted RBP2.73□□□□□ -1.97
UPF3B-203ENST00000478840 LINC00313P59037 77 aa2.73□□□□□ -1.97
UPF3B-203ENST00000478840 RPS24P62847 133 aaKnown RBP2.73□□□□□ -1.97
UPF3B-203ENST00000478840 TMEM267Q0VDI3 215 aaPredicted RBP2.73□□□□□ -1.97
UPF3B-203ENST00000478840 APOFQ13790 326 aa2.73□□□□□ -1.97
UPF3B-203ENST00000478840 IMPG1Q17R60 797 aa2.73□□□□□ -1.97
UPF3B-203ENST00000478840 ACSBG2Q5FVE4 666 aa2.73□□□□□ -1.97
UPF3B-203ENST00000478840 CD200R1LQ6Q8B3 271 aa2.73□□□□□ -1.97
UPF3B-203ENST00000478840 DCXRQ7Z4W1 244 aa2.73□□□□□ -1.97
UPF3B-203ENST00000478840 ZFAND2AQ8N6M9 145 aa2.73□□□□□ -1.97
UPF3B-203ENST00000478840 Q8NAQ8 132 aa2.73□□□□□ -1.97
UPF3B-203ENST00000478840 ERMNQ8TAM6 284 aa2.73□□□□□ -1.97
UPF3B-203ENST00000478840 ZNF721Q8TF20 911 aa2.73□□□□□ -1.97
UPF3B-203ENST00000478840 MED18Q9BUE0 208 aa2.73□□□□□ -1.97
UPF3B-203ENST00000478840 DUSP21Q9H596 190 aa2.73□□□□□ -1.97
UPF3B-203ENST00000478840 ATAD5Q96QE3 1844 aa2.72□□□□□ -1.97
UPF3B-203ENST00000478840 GGTLC3B5MD39 225 aa2.72□□□□□ -1.97
UPF3B-203ENST00000478840 CPSF4O95639 269 aaKnown RBP2.72□□□□□ -1.97
UPF3B-203ENST00000478840 IGHMP01871 453 aa2.72□□□□□ -1.97
UPF3B-203ENST00000478840 IL6P05231 212 aa2.72□□□□□ -1.97
UPF3B-203ENST00000478840 SERPINA6P08185 405 aa2.72□□□□□ -1.97
UPF3B-203ENST00000478840 HRES1P13985 223 aa2.72□□□□□ -1.97
UPF3B-203ENST00000478840 NQO1P15559 274 aaKnown RBP2.72□□□□□ -1.97
UPF3B-203ENST00000478840 DDTP30046 118 aa2.72□□□□□ -1.97
UPF3B-203ENST00000478840 GABRA3P34903 492 aa2.72□□□□□ -1.97
UPF3B-203ENST00000478840 FGF12P61328 243 aa2.72□□□□□ -1.97
UPF3B-203ENST00000478840 FABP5Q01469 135 aa2.72□□□□□ -1.97
UPF3B-203ENST00000478840 PDK2Q15119 407 aa2.72□□□□□ -1.97
UPF3B-203ENST00000478840 SLC9A3R2Q15599 337 aa2.72□□□□□ -1.97
UPF3B-203ENST00000478840 KRTAP25-1Q3LHN0 102 aa2.72□□□□□ -1.97
UPF3B-203ENST00000478840 OR2V1Q8NHB1 315 aa2.72□□□□□ -1.97
UPF3B-203ENST00000478840 RAB8BQ92930 207 aa2.72□□□□□ -1.97
UPF3B-203ENST00000478840 HIST1H2BAQ96A08 127 aa2.72□□□□□ -1.97
UPF3B-203ENST00000478840 OTUB2Q96DC9 234 aa2.72□□□□□ -1.97
UPF3B-203ENST00000478840 ABHD14BQ96IU4 210 aa2.72□□□□□ -1.97
UPF3B-203ENST00000478840 HRASLSQ9HDD0 168 aa2.72□□□□□ -1.97
UPF3B-203ENST00000478840 POLR1DQ9Y2S0 133 aa2.72□□□□□ -1.97
UPF3B-203ENST00000478840 FIS1Q9Y3D6 152 aa2.72□□□□□ -1.97
UPF3B-203ENST00000478840 TRAV8-1A0A0A6YYK1 113 aa2.71□□□□□ -1.98
UPF3B-203ENST00000478840 K7EQS6 105 aa2.71□□□□□ -1.98
UPF3B-203ENST00000478840 ACOX3O15254 700 aa2.71□□□□□ -1.98
UPF3B-203ENST00000478840 TGOLN2O43493 480 aa2.71□□□□□ -1.98
UPF3B-203ENST00000478840 IFNA5P01569 189 aa2.71□□□□□ -1.98
UPF3B-203ENST00000478840 CD5P06127 495 aa2.71□□□□□ -1.98
UPF3B-203ENST00000478840 RPL12P30050 165 aaKnown RBP2.71□□□□□ -1.98
UPF3B-203ENST00000478840 AP2S1P53680 142 aaPredicted RBP2.71□□□□□ -1.98
UPF3B-203ENST00000478840 ACTBP60709 375 aa2.71□□□□□ -1.98
UPF3B-203ENST00000478840 SNAP25P60880 206 aa2.71□□□□□ -1.98
UPF3B-203ENST00000478840 ACTG1P63261 375 aa2.71□□□□□ -1.98
UPF3B-203ENST00000478840 BSPH1Q075Z2 132 aa2.71□□□□□ -1.98
UPF3B-203ENST00000478840 PPP1R1AQ13522 171 aa2.71□□□□□ -1.98
UPF3B-203ENST00000478840 LGALSLQ3ZCW2 172 aaPredicted RBP2.71□□□□□ -1.98
UPF3B-203ENST00000478840 WDR59Q6PJI9 974 aa2.71□□□□□ -1.98
UPF3B-203ENST00000478840 EIF4E3Q8N5X7 224 aaKnown RBP2.71□□□□□ -1.98
UPF3B-203ENST00000478840 GPR32P1Q8NGA4 272 aa2.71□□□□□ -1.98
UPF3B-203ENST00000478840 OR5P3Q8WZ94 311 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms