RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 COMMD4Q9H0A8 199 aa3.42□□□□□ -1.86
USP4-209ENST00000475873 CST11Q9H112 138 aa3.42□□□□□ -1.86
USP4-209ENST00000475873 MED20Q9H944 212 aa3.42□□□□□ -1.86
USP4-209ENST00000475873 NEK6Q9HC98 313 aa3.42□□□□□ -1.86
USP4-209ENST00000475873 HMG20AQ9NP66 347 aa3.42□□□□□ -1.86
USP4-209ENST00000475873 C12orf4Q9NQ89 552 aa3.42□□□□□ -1.86
USP4-209ENST00000475873 SLC35D1Q9NTN3 355 aa3.42□□□□□ -1.86
USP4-209ENST00000475873 TECRQ9NZ01 308 aaKnown RBP3.42□□□□□ -1.86
USP4-209ENST00000475873 GSTK1Q9Y2Q3 226 aa3.42□□□□□ -1.86
USP4-209ENST00000475873 V9GYS6 101 aa3.42□□□□□ -1.86
USP4-209ENST00000475873 MEIKINA0A087WXM9 373 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 TRAV24A0A0B4J272 114 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 LOC100506127A0A0U1RQW1 187 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 NBDYA0A0U1RRE5 68 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 FUOMA2VDF0 154 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 TRPC5OSA6NMA1 111 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 FXYD1O00168 92 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 RRHO14718 337 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 SELENOFO60613 162 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 PFDN1O60925 122 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 SRSF10O75494 262 aaKnown RBP3.41□□□□□ -1.86
USP4-209ENST00000475873 ZNF682O95780 498 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 IFNA14P01570 189 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 GIG44P09565 113 aaPredicted RBP3.41□□□□□ -1.86
USP4-209ENST00000475873 NCK1P16333 377 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 KDELR2P33947 212 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 GBX2P52951 348 aaPredicted RBP3.41□□□□□ -1.86
USP4-209ENST00000475873 ATP1B3P54709 279 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 TSPAN5P62079 268 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 SELENOWP63302 87 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 SCN1BQ07699 218 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 DGCR6Q14129 220 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 NDUFA5Q16718 116 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 TATDN3Q17R31 274 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 TMEM30BQ3MIR4 351 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 AGKQ53H12 422 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 CT45A1Q5HYN5 189 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 SPIN3Q5JUX0 258 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 LELP1Q5T871 98 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 ZNF57Q68EA5 555 aaPredicted RBP3.41□□□□□ -1.86
USP4-209ENST00000475873 SIGIRRQ6IA17 410 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 SLC16A12Q6ZSM3 486 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 ZNF554Q86TJ5 538 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 SLC51BQ86UW2 128 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 COMMD2Q86X83 199 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 APRG1Q8IVJ8 170 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 ODF3L1Q8IXM7 274 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 ENTHD1Q8IYW4 607 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 OR2C3Q8N628 320 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 FAM86B1Q8N7N1 296 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 C8orf31Q8N9H6 132 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 OR5B3Q8NH48 314 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 OR4A5Q8NH83 315 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 CT45A3Q8NHU0 189 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 OTOSQ8NHW6 89 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 ABHD5Q8WTS1 349 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 TMEM68Q96MH6 324 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 INTS14Q96SY0 518 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 ZNF251Q9BRH9 671 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 CSTL1Q9H114 145 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 ANKRD19PQ9H560 264 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 EXOSC4Q9NPD3 245 aaKnown RBP3.41□□□□□ -1.86
USP4-209ENST00000475873 NUDT15Q9NV35 164 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 GFOD1Q9NXC2 390 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 LGALS13Q9UHV8 139 aa3.41□□□□□ -1.86
USP4-209ENST00000475873 ZNF230Q9UIE0 474 aaPredicted RBP3.41□□□□□ -1.86
USP4-209ENST00000475873 IGKV1-9A0A0C4DH69 117 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 A0A0G2JLM5 398 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 SERTM2A0A1B0GWG4 89 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 XKRY2A2RUG3 117 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 B2RBV5 119 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 PPP5D1E7EU14 171 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 FAM229AH3BQW9 127 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 H3BUA1 57 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 SH2D1BO14796 132 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 GSC2O15499 205 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 LANCL1O43813 399 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 SSX5O60225 188 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 DIRAS1O95057 198 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 IFNA21P01568 189 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 IFNA17P01571 189 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 LYNP07948 512 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 HSMCR30P0CW71 290 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 ZNF44P15621 663 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 OR3A3P47888 321 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 GSSP48637 474 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 HCCSP53701 268 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 RPS27AP62979 156 aaKnown RBP3.4□□□□□ -1.87
USP4-209ENST00000475873 TMEM267Q0VDI3 215 aaPredicted RBP3.4□□□□□ -1.87
USP4-209ENST00000475873 SPCS2Q15005 226 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 RNF212Q495C1 297 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 RRM2BQ7LG56 351 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 TPRA1Q86W33 373 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 UXS1Q8NBZ7 420 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 OR10A7Q8NGE5 316 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 OR1L6Q8NGR2 347 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 ZNRF2Q8NHG8 242 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 GRPEL2Q8TAA5 225 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 CD300LFQ8TDQ1 290 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 UBLCP1Q8WVY7 318 aaPredicted RBP3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms