RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 IL3RAP26951 378 aa11.08□□□□□ -0.64
UPF3A-204ENST00000475218 CFHR3Q02985 330 aa11.08□□□□□ -0.64
UPF3A-204ENST00000475218 HMGN3Q15651 99 aa11.08□□□□□ -0.64
UPF3A-204ENST00000475218 HSD17B12Q53GQ0 312 aa11.08□□□□□ -0.64
UPF3A-204ENST00000475218 STEAP3Q658P3 488 aa11.08□□□□□ -0.64
UPF3A-204ENST00000475218 ZNF880Q6PDB4 577 aa11.08□□□□□ -0.64
UPF3A-204ENST00000475218 ZNF554Q86TJ5 538 aa11.08□□□□□ -0.64
UPF3A-204ENST00000475218 CROCCP3Q8IVE0 287 aa11.08□□□□□ -0.64
UPF3A-204ENST00000475218 MRPL41Q8IXM3 137 aaKnown RBP11.08□□□□□ -0.64
UPF3A-204ENST00000475218 NCBP2LA6PVI3 153 aaKnown RBP11.08□□□□□ -0.64
UPF3A-204ENST00000475218 PF4P02776 101 aa11.08□□□□□ -0.64
UPF3A-204ENST00000475218 CRHBPP24387 322 aa11.08□□□□□ -0.64
UPF3A-204ENST00000475218 THBS3P49746 956 aa11.08□□□□□ -0.64
UPF3A-204ENST00000475218 HTD2P86397 168 aa11.08□□□□□ -0.64
UPF3A-204ENST00000475218 LCNL1Q6ZST4 164 aa11.08□□□□□ -0.64
UPF3A-204ENST00000475218 C8orf86Q6ZUL3 223 aa11.08□□□□□ -0.64
UPF3A-204ENST00000475218 TMEM59Q9BXS4 323 aa11.08□□□□□ -0.64
UPF3A-204ENST00000475218 PARP12Q9H0J9 701 aaKnown RBP11.08□□□□□ -0.64
UPF3A-204ENST00000475218 LPAR5Q9H1C0 372 aa11.08□□□□□ -0.64
UPF3A-204ENST00000475218 SCN3BQ9NY72 215 aa11.08□□□□□ -0.64
UPF3A-204ENST00000475218 JPT1Q9UK76 154 aa11.08□□□□□ -0.64
UPF3A-204ENST00000475218 MAP2K4P45985 399 aa11.07□□□□□ -0.64
UPF3A-204ENST00000475218 LY6G6FQ5SQ64 297 aa11.07□□□□□ -0.64
UPF3A-204ENST00000475218 GLT8D1Q68CQ7 371 aa11.07□□□□□ -0.64
UPF3A-204ENST00000475218 SVOPQ8N4V2 548 aa11.07□□□□□ -0.64
UPF3A-204ENST00000475218 UFD1Q92890 307 aa11.07□□□□□ -0.64
UPF3A-204ENST00000475218 P2RX4Q99571 388 aa11.07□□□□□ -0.64
UPF3A-204ENST00000475218 ABHD14AQ9BUJ0 271 aa11.07□□□□□ -0.64
UPF3A-204ENST00000475218 MRPL20Q9BYC9 149 aaKnown RBP11.07□□□□□ -0.64
UPF3A-204ENST00000475218 K7EIL1 84 aa11.06□□□□□ -0.64
UPF3A-204ENST00000475218 AP4M1O00189 453 aa11.06□□□□□ -0.64
UPF3A-204ENST00000475218 SOCS1O15524 211 aa11.06□□□□□ -0.64
UPF3A-204ENST00000475218 TXNL1O43396 289 aa11.06□□□□□ -0.64
UPF3A-204ENST00000475218 YPEL1O60688 119 aa11.06□□□□□ -0.64
UPF3A-204ENST00000475218 CPEP16870 476 aa11.06□□□□□ -0.64
UPF3A-204ENST00000475218 CNTFRP26992 372 aa11.06□□□□□ -0.64
UPF3A-204ENST00000475218 OR3A3P47888 321 aa11.06□□□□□ -0.64
UPF3A-204ENST00000475218 FABP5Q01469 135 aa11.06□□□□□ -0.64
UPF3A-204ENST00000475218 DCTN2Q13561 401 aaKnown RBP11.06□□□□□ -0.64
UPF3A-204ENST00000475218 P2RY14Q15391 338 aa11.06□□□□□ -0.64
UPF3A-204ENST00000475218 ZNF833PQ6ZTB9 187 aa11.06□□□□□ -0.64
UPF3A-204ENST00000475218 FOXRED2Q8IWF2 684 aa11.06□□□□□ -0.64
UPF3A-204ENST00000475218 FAM89BQ8N5H3 189 aa11.06□□□□□ -0.64
UPF3A-204ENST00000475218 OR6M1Q8NGM8 313 aa11.06□□□□□ -0.64
UPF3A-204ENST00000475218 KCNG3Q8TAE7 436 aa11.06□□□□□ -0.64
UPF3A-204ENST00000475218 MRAPQ8TCY5 172 aa11.06□□□□□ -0.64
UPF3A-204ENST00000475218 RCC1LQ96I51 464 aaKnown RBP11.06□□□□□ -0.64
UPF3A-204ENST00000475218 DUX3Q96PT4 197 aa11.06□□□□□ -0.64
UPF3A-204ENST00000475218 YPEL2Q96QA6 119 aa11.06□□□□□ -0.64
UPF3A-204ENST00000475218 NABP2Q9BQ15 211 aa11.06□□□□□ -0.64
UPF3A-204ENST00000475218 ZNF251Q9BRH9 671 aa11.06□□□□□ -0.64
UPF3A-204ENST00000475218 HDHD3Q9BSH5 251 aaPredicted RBP11.06□□□□□ -0.64
UPF3A-204ENST00000475218 IFI27L2Q9H2X8 130 aa11.06□□□□□ -0.64
UPF3A-204ENST00000475218 RAB9BQ9NP90 201 aa11.06□□□□□ -0.64
UPF3A-204ENST00000475218 ISYNA1Q9NPH2 558 aa11.06□□□□□ -0.64
UPF3A-204ENST00000475218 DNAH9Q9NYC9 4486 aa11.06□□□□□ -0.64
UPF3A-204ENST00000475218 RGS10O43665 173 aa11.05□□□□□ -0.64
UPF3A-204ENST00000475218 BPNT1O95861 308 aa11.05□□□□□ -0.64
UPF3A-204ENST00000475218 RPLP1P05386 114 aaKnown RBP11.05□□□□□ -0.64
UPF3A-204ENST00000475218 ALDH3B2P48448 385 aa11.05□□□□□ -0.64
UPF3A-204ENST00000475218 TMEM50BP56557 158 aa11.05□□□□□ -0.64
UPF3A-204ENST00000475218 EGFEM1PQ0D2K5 195 aa11.05□□□□□ -0.64
UPF3A-204ENST00000475218 PLA2G7Q13093 441 aa11.05□□□□□ -0.64
UPF3A-204ENST00000475218 KCTD21Q4G0X4 260 aa11.05□□□□□ -0.64
UPF3A-204ENST00000475218 RNF152Q8N8N0 203 aa11.05□□□□□ -0.64
UPF3A-204ENST00000475218 NEDD4LQ96PU5 975 aa11.05□□□□□ -0.64
UPF3A-204ENST00000475218 ZFP57Q9NU63 452 aa11.05□□□□□ -0.64
UPF3A-204ENST00000475218 KCNIP1Q9NZI2 227 aa11.05□□□□□ -0.64
UPF3A-204ENST00000475218 TPRKBQ9Y3C4 175 aa11.05□□□□□ -0.64
UPF3A-204ENST00000475218 AK6Q9Y3D8 172 aaKnown RBP11.05□□□□□ -0.64
UPF3A-204ENST00000475218 SAA2-SAA4A0A096LPE2 208 aa11.05□□□□□ -0.64
UPF3A-204ENST00000475218 SLC17A2O00624 439 aa11.05□□□□□ -0.64
UPF3A-204ENST00000475218 HSMCR30P0CW71 290 aa11.05□□□□□ -0.64
UPF3A-204ENST00000475218 SAA2P0DJI9 122 aaPredicted RBP11.05□□□□□ -0.64
UPF3A-204ENST00000475218 BLVRBP30043 206 aaPredicted RBP11.05□□□□□ -0.64
UPF3A-204ENST00000475218 HOXD3P31249 432 aaPredicted RBP11.05□□□□□ -0.64
UPF3A-204ENST00000475218 MLLT11Q13015 90 aaPredicted RBP11.05□□□□□ -0.64
UPF3A-204ENST00000475218 PRSS48Q7RTY5 328 aa11.05□□□□□ -0.64
UPF3A-204ENST00000475218 KLHL30-AS1Q8NEE0 82 aa11.05□□□□□ -0.64
UPF3A-204ENST00000475218 TSPAN14Q8NG11 270 aa11.05□□□□□ -0.64
UPF3A-204ENST00000475218 OR8H1Q8NGG4 311 aa11.05□□□□□ -0.64
UPF3A-204ENST00000475218 RAX2Q96IS3 184 aa11.05□□□□□ -0.64
UPF3A-204ENST00000475218 CNBD2Q96M20 576 aa11.05□□□□□ -0.64
UPF3A-204ENST00000475218 RSL24D1Q9UHA3 163 aaKnown RBP11.05□□□□□ -0.64
UPF3A-204ENST00000475218 AK3Q9UIJ7 227 aa11.05□□□□□ -0.64
UPF3A-204ENST00000475218 WI2-2373I1.2A0A1W2PRP0 233 aa11.04□□□□□ -0.64
UPF3A-204ENST00000475218 SHISA3A0PJX4 238 aa11.04□□□□□ -0.64
UPF3A-204ENST00000475218 TRIM64CA6NLI5 447 aa11.04□□□□□ -0.64
UPF3A-204ENST00000475218 LDLRAD4O15165 306 aa11.04□□□□□ -0.64
UPF3A-204ENST00000475218 IGF1P05019 195 aa11.04□□□□□ -0.64
UPF3A-204ENST00000475218 CLDN12P56749 244 aa11.04□□□□□ -0.64
UPF3A-204ENST00000475218 SSX1Q16384 188 aa11.04□□□□□ -0.64
UPF3A-204ENST00000475218 COMMD1Q8N668 190 aa11.04□□□□□ -0.64
UPF3A-204ENST00000475218 GALMQ96C23 342 aa11.04□□□□□ -0.64
UPF3A-204ENST00000475218 MGLLQ99685 303 aa11.04□□□□□ -0.64
UPF3A-204ENST00000475218 ZNF107Q9UII5 783 aaPredicted RBP11.04□□□□□ -0.64
UPF3A-204ENST00000475218 TRBV6-6A0A0A6YYG2 114 aa11.03□□□□□ -0.64
UPF3A-204ENST00000475218 CCDC160A6NGH7 325 aa11.03□□□□□ -0.64
UPF3A-204ENST00000475218 ST8SIA5O15466 376 aa11.03□□□□□ -0.64
UPF3A-204ENST00000475218 SLC2A2P11168 524 aaPredicted RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms