RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 SLC25A31Q9H0C2 315 aa16.07■□□□□ 0.16
VIM-203ENST00000469543 IGHV3-43A0A0B4J1X8 118 aa16.07■□□□□ 0.16
VIM-203ENST00000469543 DEFB108AA8MXU0 73 aa16.07■□□□□ 0.16
VIM-203ENST00000469543 IGHV3-43DP0DP04 118 aa16.07■□□□□ 0.16
VIM-203ENST00000469543 RPS16P62249 146 aaKnown RBP16.07■□□□□ 0.16
VIM-203ENST00000469543 BTNL3Q6UXE8 466 aa16.07■□□□□ 0.16
VIM-203ENST00000469543 VSIRQ9H7M9 311 aa16.07■□□□□ 0.16
VIM-203ENST00000469543 POLDIP2Q9Y2S7 368 aa16.07■□□□□ 0.16
VIM-203ENST00000469543 PUS1Q9Y606 427 aaKnown RBP eCLIP16.07■□□□□ 0.16
VIM-203ENST00000469543 PTBP3O95758 552 aaKnown RBP16.06■□□□□ 0.16
VIM-203ENST00000469543 CECR9P0C854 216 aa16.06■□□□□ 0.16
VIM-203ENST00000469543 FLI1Q01543 452 aaPredicted RBP16.06■□□□□ 0.16
VIM-203ENST00000469543 MRGPRDQ8TDS7 321 aa16.06■□□□□ 0.16
VIM-203ENST00000469543 C5orf30Q96GV9 206 aa16.06■□□□□ 0.16
VIM-203ENST00000469543 IFT22Q9H7X7 185 aa16.06■□□□□ 0.16
VIM-203ENST00000469543 IQCF6A8MYZ5 107 aa16.06■□□□□ 0.16
VIM-203ENST00000469543 IGHG3P01860 377 aa16.06■□□□□ 0.16
VIM-203ENST00000469543 LTC4SQ16873 150 aa16.06■□□□□ 0.16
VIM-203ENST00000469543 PIP4P1Q86T03 277 aa16.06■□□□□ 0.16
VIM-203ENST00000469543 RPRMLQ8N4K4 120 aa16.06■□□□□ 0.16
VIM-203ENST00000469543 KPTNQ9Y664 436 aa16.06■□□□□ 0.16
VIM-203ENST00000469543 C12orf77C9JDV5 145 aa16.05■□□□□ 0.16
VIM-203ENST00000469543 KRASP01116 189 aa16.05■□□□□ 0.16
VIM-203ENST00000469543 IGHV3-13P01766 116 aa16.05■□□□□ 0.16
VIM-203ENST00000469543 IGHV3-7P01780 117 aa16.05■□□□□ 0.16
VIM-203ENST00000469543 RPL30P62888 115 aaKnown RBP16.05■□□□□ 0.16
VIM-203ENST00000469543 DKK4Q9UBT3 224 aa16.05■□□□□ 0.16
VIM-203ENST00000469543 IGKV3-15P01624 115 aa16.05■□□□□ 0.16
VIM-203ENST00000469543 SSTR5P35346 364 aa16.05■□□□□ 0.16
VIM-203ENST00000469543 GLIPR1P48060 266 aa16.05■□□□□ 0.16
VIM-203ENST00000469543 RAB13P51153 203 aa16.05■□□□□ 0.16
VIM-203ENST00000469543 KCNJ16Q9NPI9 418 aa16.05■□□□□ 0.16
VIM-203ENST00000469543 MBNL3Q9NUK0 354 aaKnown RBP16.05■□□□□ 0.16
VIM-203ENST00000469543 PRELID3BQ9Y3B1 194 aa16.05■□□□□ 0.16
VIM-203ENST00000469543 STRAPQ9Y3F4 350 aaKnown RBP16.05■□□□□ 0.16
VIM-203ENST00000469543 ZNF318Q5VUA4 2279 aa16.05■□□□□ 0.16
VIM-203ENST00000469543 S100GP29377 79 aa16.04■□□□□ 0.16
VIM-203ENST00000469543 GABRA2P47869 451 aa16.04■□□□□ 0.16
VIM-203ENST00000469543 RAB5CP51148 216 aa16.04■□□□□ 0.16
VIM-203ENST00000469543 ZNF816Q0VGE8 651 aaPredicted RBP16.04■□□□□ 0.16
VIM-203ENST00000469543 GUSBP1Q15486 140 aa16.04■□□□□ 0.16
VIM-203ENST00000469543 SPRNQ5BIV9 151 aa16.04■□□□□ 0.16
VIM-203ENST00000469543 KRBOX4Q5JUW0 171 aa16.04■□□□□ 0.16
VIM-203ENST00000469543 FAM180AQ6UWF9 173 aa16.04■□□□□ 0.16
VIM-203ENST00000469543 HAPLN4Q86UW8 402 aa16.04■□□□□ 0.16
VIM-203ENST00000469543 FGFRL1Q8N441 504 aa16.04■□□□□ 0.16
VIM-203ENST00000469543 SLC35B3Q9H1N7 401 aa16.04■□□□□ 0.16
VIM-203ENST00000469543 OR2D2Q9H210 308 aa16.04■□□□□ 0.16
VIM-203ENST00000469543 A0A1W2PPE2 198 aa16.04■□□□□ 0.16
VIM-203ENST00000469543 TLE1Q04724 770 aa16.04■□□□□ 0.16
VIM-203ENST00000469543 INO80CQ6PI98 192 aaPredicted RBP16.04■□□□□ 0.16
VIM-203ENST00000469543 COQ2Q96H96 371 aa16.04■□□□□ 0.16
VIM-203ENST00000469543 A0A1W2PPH5 198 aa16.03■□□□□ 0.16
VIM-203ENST00000469543 TIMM8AO60220 97 aaPredicted RBP16.03■□□□□ 0.16
VIM-203ENST00000469543 G6PCP35575 357 aa16.03■□□□□ 0.16
VIM-203ENST00000469543 MSMPQ1L6U9 139 aa16.03■□□□□ 0.16
VIM-203ENST00000469543 SPANXN5Q5MJ07 72 aa16.03■□□□□ 0.16
VIM-203ENST00000469543 WDR82Q6UXN9 313 aa16.03■□□□□ 0.16
VIM-203ENST00000469543 LRP11Q86VZ4 500 aa16.03■□□□□ 0.16
VIM-203ENST00000469543 FAM24BQ8N5W8 94 aa16.03■□□□□ 0.16
VIM-203ENST00000469543 OR8G5Q8NG78 346 aa16.03■□□□□ 0.16
VIM-203ENST00000469543 A0A1B0GU03 582 aa16.03■□□□□ 0.16
VIM-203ENST00000469543 hCG_1809904A0A1W2PP81 198 aa16.03■□□□□ 0.16
VIM-203ENST00000469543 A0A1W2PR64 198 aa16.03■□□□□ 0.16
VIM-203ENST00000469543 A0A1W2PRV1 198 aa16.03■□□□□ 0.16
VIM-203ENST00000469543 RBFOX3A6NFN3 312 aa16.03■□□□□ 0.16
VIM-203ENST00000469543 SYNGR2O43760 224 aa16.03■□□□□ 0.16
VIM-203ENST00000469543 AVPI1Q5T686 147 aa16.03■□□□□ 0.16
VIM-203ENST00000469543 SLC25A24Q6NUK1 477 aa16.03■□□□□ 0.16
VIM-203ENST00000469543 ABHD14BQ96IU4 210 aa16.03■□□□□ 0.16
VIM-203ENST00000469543 SMCO4Q9NRQ5 59 aa16.03■□□□□ 0.16
VIM-203ENST00000469543 DUSP13Q9UII6 198 aa16.03■□□□□ 0.16
VIM-203ENST00000469543 DUXBA0A1W2PPF3 345 aa16.02■□□□□ 0.16
VIM-203ENST00000469543 CD55P08174 381 aa16.02■□□□□ 0.16
VIM-203ENST00000469543 HOXC12P31275 282 aa16.02■□□□□ 0.16
VIM-203ENST00000469543 BRWD1-AS2P59051 145 aa16.02■□□□□ 0.16
VIM-203ENST00000469543 SPINK9Q5DT21 86 aa16.02■□□□□ 0.16
VIM-203ENST00000469543 SHEQ5VZ18 495 aa16.02■□□□□ 0.16
VIM-203ENST00000469543 IL22RA2Q969J5 263 aa16.02■□□□□ 0.16
VIM-203ENST00000469543 ATP5SQ99766 215 aa16.02■□□□□ 0.16
VIM-203ENST00000469543 WIPI2Q9Y4P8 454 aa16.02■□□□□ 0.16
VIM-203ENST00000469543 TNFSF13O75888 250 aa16.02■□□□□ 0.16
VIM-203ENST00000469543 HBZP02008 142 aa16.02■□□□□ 0.16
VIM-203ENST00000469543 CBR1P16152 277 aa16.02■□□□□ 0.16
VIM-203ENST00000469543 STX12Q86Y82 276 aa16.02■□□□□ 0.16
VIM-203ENST00000469543 Q8IYB0 196 aa16.02■□□□□ 0.16
VIM-203ENST00000469543 HIST1H2BAQ96A08 127 aa16.02■□□□□ 0.16
VIM-203ENST00000469543 PSENENQ9NZ42 101 aa16.02■□□□□ 0.16
VIM-203ENST00000469543 NDUFA2O43678 99 aa16.02■□□□□ 0.15
VIM-203ENST00000469543 MDH2P40926 338 aaKnown RBP16.02■□□□□ 0.15
VIM-203ENST00000469543 SULT1A1P50225 295 aa16.02■□□□□ 0.15
VIM-203ENST00000469543 FGF8P55075 233 aaPredicted RBP16.02■□□□□ 0.15
VIM-203ENST00000469543 HMGN3Q15651 99 aa16.02■□□□□ 0.15
VIM-203ENST00000469543 SEM1Q6ZVN7 128 aa16.02■□□□□ 0.15
VIM-203ENST00000469543 SSX7Q7RTT5 188 aa16.02■□□□□ 0.15
VIM-203ENST00000469543 GALMQ96C23 342 aa16.02■□□□□ 0.15
VIM-203ENST00000469543 TREM2Q9NZC2 230 aa16.02■□□□□ 0.15
VIM-203ENST00000469543 TACC2O95359 2948 aa16.01■□□□□ 0.15
VIM-203ENST00000469543 ZNF727A8MUV8 499 aa16.01■□□□□ 0.15
VIM-203ENST00000469543 IL2RGP31785 369 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms